Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 5.8e-164 580.9 300 100.0
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 7.1e-122 441.0 240 92.9
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 8.2e-102 374.4 302 65.6
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 1.7e-99 366.7 275 67.6
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 3.9e-96 355.5 275 68.0
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 5.1e-96 355.1 244 70.9
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 8.8e-96 354.4 260 65.8
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.1e-95 354.0 255 69.4
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 5.7e-95 351.7 259 69.1
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 7.4e-95 351.3 284 64.8
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 9.7e-95 350.9 261 66.3
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 9.7e-95 350.9 260 68.5
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 9.7e-95 350.9 273 67.8
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 1.3e-94 350.5 260 66.5
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 1.3e-94 350.5 294 61.2
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 1.7e-94 350.1 259 68.7
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 1.7e-94 350.1 270 65.6
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 1.7e-94 350.1 276 63.8
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 2.2e-94 349.7 253 69.6
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 2.2e-94 349.7 284 63.0
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 2.8e-94 349.4 281 63.0
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.8e-94 349.4 284 64.4
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 2.8e-94 349.4 284 64.4
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 8.2e-94 347.8 259 68.3
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 1.1e-93 347.4 259 68.3
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.1e-93 347.4 281 62.6
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 1.1e-93 347.4 260 65.8
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 1.1e-93 347.4 273 67.0
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 1.4e-93 347.1 278 64.0
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.8e-93 346.7 262 66.4
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 4.1e-93 345.5 253 67.6
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 4.1e-93 345.5 247 68.8
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 4.1e-93 345.5 267 64.8
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 5.3e-93 345.1 262 64.5
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 5.3e-93 345.1 297 59.3
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 5.3e-93 345.1 297 62.3
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 5.3e-93 345.1 285 62.5
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 6.9e-93 344.7 269 64.3
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 9.1e-93 344.4 259 66.8
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 1.2e-92 344.0 260 67.3
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 1.2e-92 344.0 262 64.9
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.5e-92 343.6 259 66.0
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 1.5e-92 343.6 262 64.9
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 1.5e-92 343.6 261 65.9
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 3.4e-92 342.4 273 63.7
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 3.4e-92 342.4 273 63.7
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 7.7e-92 341.3 279 64.2
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 1.0e-91 340.9 260 65.4
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 1.7e-91 340.1 265 65.3
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 2.9e-91 339.3 277 62.5
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 5.0e-91 338.6 294 60.5
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 1.4e-90 337.0 260 63.8
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 1.9e-90 336.7 260 64.2
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.9e-90 336.7 234 69.7
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 1.9e-90 336.7 258 66.3
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.5e-90 336.3 288 59.7
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 5.5e-90 335.1 286 59.8
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 9.4e-90 334.3 251 67.7
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 1.2e-89 334.0 241 67.6
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 1.6e-89 333.6 255 66.7
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 2.7e-89 332.8 245 66.5
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 1.0e-88 330.9 291 59.1
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 1.4e-88 330.5 277 60.6
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 3.9e-88 328.9 244 65.2
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 3.9e-88 328.9 261 61.7
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.1e-88 328.6 287 61.0
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 8.8e-88 327.8 253 63.6
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 1.1e-87 327.4 285 61.8
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 1.5e-87 327.0 262 63.4
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 2.6e-87 326.2 252 62.3
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 3.3e-87 325.9 249 64.7
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 3.3e-87 325.9 279 60.9
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 5.7e-87 325.1 260 62.3
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.7e-86 323.6 249 63.5
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 2.8e-86 322.8 234 65.0
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 3.7e-86 322.4 249 63.1
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 4.8e-86 322.0 249 63.1
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 4.8e-86 322.0 249 61.8
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 6.3e-86 321.6 234 64.5
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 6.3e-86 321.6 245 62.9
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 6.3e-86 321.6 234 64.5
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.8e-85 320.1 248 60.9
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 4.1e-85 318.9 241 66.0
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 5.3e-85 318.5 234 64.1
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 5.3e-85 318.5 302 57.3
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 5.3e-85 318.5 241 64.3
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 7.0e-85 318.2 277 56.7
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 7.0e-85 318.2 261 60.5
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 9.1e-85 317.8 250 62.0
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 1.2e-84 317.4 263 61.6
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 1.2e-84 317.4 249 61.0
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.6e-84 317.0 278 56.1
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 1.6e-84 317.0 321 53.9
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 2.0e-84 316.6 294 57.8
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 2.6e-84 316.2 294 57.5
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 4.5e-84 315.5 272 56.2
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 7.7e-84 314.7 273 56.4
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 5.0e-83 312.0 248 60.1
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 5.0e-83 312.0 248 60.1
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 5.0e-83 312.0 250 58.0
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 6.5e-83 311.6 283 54.8
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 8.5e-83 311.2 225 65.8
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 8.5e-83 311.2 255 60.8
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 1.1e-82 310.8 265 60.4
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 1.5e-82 310.5 246 62.2
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.9e-82 310.1 265 59.2
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 3.2e-82 309.3 248 59.7
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 1.2e-81 307.4 263 59.7
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 6.1e-81 305.1 238 60.5
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 2.3e-80 303.1 273 57.9
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 4.0e-80 302.4 231 62.8
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.1e-79 300.8 273 57.1
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 2.0e-79 300.1 248 58.1
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.8e-78 296.2 254 58.7
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 1.1e-77 294.3 251 60.6
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.4e-77 293.9 315 53.0
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 1.4e-77 293.9 217 67.7
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 2.4e-77 293.1 271 55.4
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.6e-76 290.4 271 55.4
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 2.0e-76 290.0 311 50.5
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 8.5e-75 284.6 269 55.8
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 4.2e-74 282.3 239 61.5
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.6e-73 280.4 290 53.4
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 3.6e-73 279.3 239 60.3
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 4.0e-72 275.8 245 57.1
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 7.0e-69 265.0 250 52.4
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.5e-68 262.3 350 46.0
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.9e-68 261.9 232 57.3
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 5.9e-68 261.9 241 53.1
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.7e-67 260.4 238 57.1
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.5e-66 257.3 352 45.2
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 3.4e-63 246.1 293 45.4
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 5.7e-63 245.4 165 68.5
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 3.7e-62 242.7 219 54.8
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 7.7e-60 235.0 231 49.4
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 5.7e-55 218.8 228 47.4
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.3e-54 217.6 426 36.2
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 6.4e-54 215.3 227 52.4
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 5.4e-53 212.2 227 47.1
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 2.8e-49 199.9 133 72.2
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 4.7e-49 199.1 224 44.2
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 7.5e-47 191.8 280 41.8
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 7.5e-47 191.8 133 70.7
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 1.1e-42 177.9 141 60.3
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 3.6e-41 172.9 194 45.9
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 1.3e-35 154.5 116 75.9
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 7.3e-34 148.7 131 56.5
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 7.3e-26 122.1 145 44.8
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 4.4e-23 112.8 107 47.7
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 4.8e-17 92.8 79 54.4
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 1.7e-14 84.3 75 62.7
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 6.0e-12 75.9 227 30.8
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 5.1e-11 72.8 54 70.4
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 6.7e-11 72.4 72 48.6
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 1.5e-10 71.2 114 28.9
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 7.4e-10 68.9 52 65.4
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 3.4e-07 60.1 204 28.9
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 5.8e-07 59.3 206 26.2
TAR375G0159 Trochodendron aralioides HOM05D002234 ORTHO05D002254 7.6e-07 58.9 201 28.4


User provided reference genes

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