Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 7.9e-194 680.2 340 100.0
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 1.5e-131 473.4 342 73.4
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 1.3e-124 450.3 349 71.9
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 4.6e-109 398.7 297 66.3
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 7.8e-109 397.9 310 65.2
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 1.0e-108 397.5 262 71.0
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 1.0e-108 397.5 262 71.0
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 1.1e-107 394.0 259 71.4
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 1.5e-107 393.7 298 66.1
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 1.5e-107 393.7 298 64.1
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 1.9e-107 393.3 342 59.4
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 2.5e-107 392.9 262 71.4
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 2.5e-107 392.9 338 60.1
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 3.3e-107 392.5 301 64.8
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 3.3e-107 392.5 262 70.6
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 4.3e-107 392.1 306 64.1
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 5.6e-107 391.7 302 64.6
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 1.3e-106 390.6 297 63.3
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 1.6e-106 390.2 298 64.1
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 2.1e-106 389.8 299 63.2
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 2.8e-106 389.4 300 65.0
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 3.6e-106 389.0 290 67.2
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 3.6e-106 389.0 303 64.4
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 4.8e-106 388.7 303 64.4
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 8.1e-106 387.9 303 63.0
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 8.1e-106 387.9 306 61.8
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 1.1e-105 387.5 314 63.4
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 1.1e-105 387.5 298 64.8
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 1.8e-105 386.7 298 65.1
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 4.0e-105 385.6 306 62.7
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 4.0e-105 385.6 265 69.8
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 4.0e-105 385.6 253 73.5
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 5.3e-105 385.2 298 63.4
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 5.3e-105 385.2 334 60.2
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 5.3e-105 385.2 346 59.5
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 6.9e-105 384.8 298 63.8
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 9.0e-105 384.4 351 58.4
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 1.2e-104 384.0 250 70.0
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 1.5e-104 383.6 252 71.4
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 2.0e-104 383.3 300 61.7
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 2.6e-104 382.9 307 62.2
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 2.6e-104 382.9 254 70.9
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 3.4e-104 382.5 298 63.1
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 4.4e-104 382.1 291 65.3
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 9.9e-104 380.9 297 63.3
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 1.3e-103 380.6 289 66.1
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 1.3e-103 380.6 296 63.2
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 1.3e-103 380.6 315 61.6
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 2.2e-103 379.8 305 63.3
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 2.9e-103 379.4 298 64.4
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 3.8e-103 379.0 297 63.0
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 3.8e-103 379.0 298 61.4
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 4.9e-103 378.6 304 62.2
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 4.9e-103 378.6 300 61.3
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 6.4e-103 378.3 292 65.1
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 6.4e-103 378.3 261 68.2
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 6.4e-103 378.3 299 62.2
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 8.4e-103 377.9 305 62.6
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 1.1e-102 377.5 306 60.8
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.4e-102 377.1 340 58.5
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 1.4e-102 377.1 299 63.5
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 1.9e-102 376.7 338 59.5
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 1.9e-102 376.7 355 57.7
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 1.9e-102 376.7 300 62.0
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 2.4e-102 376.3 341 58.1
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 3.2e-102 375.9 340 58.2
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 4.2e-102 375.6 299 61.5
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 4.2e-102 375.6 291 63.6
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 7.1e-102 374.8 302 63.6
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 9.3e-102 374.4 298 61.4
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 1.6e-101 373.6 301 62.1
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 2.7e-101 372.9 312 62.5
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 7.9e-101 371.3 346 58.4
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 1.3e-100 370.5 303 62.4
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 2.3e-100 369.8 295 63.4
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 2.3e-100 369.8 305 60.7
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 3.9e-100 369.0 303 62.0
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 3.9e-100 369.0 303 62.4
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 5.1e-100 368.6 298 60.1
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.1e-99 367.5 301 60.5
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 1.5e-99 367.1 332 57.5
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 9.6e-99 364.4 302 61.6
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 8.1e-98 361.3 240 71.2
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 3.1e-97 359.4 348 56.3
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 2.0e-96 356.7 298 60.4
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 5.8e-96 355.1 302 60.3
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 1.3e-95 354.0 277 63.5
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.3e-95 354.0 226 71.7
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 2.2e-95 353.2 281 61.9
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 6.4e-95 351.7 306 59.8
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 6.4e-95 351.7 257 64.6
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 2.4e-94 349.7 301 59.5
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 4.2e-94 349.0 285 62.8
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.2e-93 347.4 309 59.2
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 2.1e-93 346.7 311 58.8
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 3.5e-93 345.9 276 62.0
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 5.6e-91 338.6 297 58.2
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 5.6e-91 338.6 249 63.1
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 2.8e-90 336.3 319 54.2
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 1.4e-89 334.0 313 56.2
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 4.0e-89 332.4 352 52.6
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 1.2e-88 330.9 287 58.9
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 3.2e-86 322.8 257 63.0
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 4.2e-86 322.4 304 56.6
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 5.5e-86 322.0 242 65.7
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 3.5e-85 319.3 287 57.5
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 2.3e-84 316.6 297 55.9
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 7.9e-77 291.6 232 63.8
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 6.7e-76 288.5 217 65.4
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 9.7e-75 284.6 232 62.1
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 4.3e-67 259.2 216 61.1
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 9.7e-67 258.1 272 52.6
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 1.3e-63 247.7 247 51.8
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 1.7e-58 230.7 202 56.4
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 3.7e-58 229.6 199 56.8
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 1.4e-57 227.6 144 76.4
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 1.5e-56 224.2 251 49.0
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 8.5e-55 218.4 196 54.6
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 2.1e-53 213.8 190 56.3
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 2.7e-53 213.4 195 53.8
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 4.4e-51 206.1 222 51.4
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 1.3e-50 204.5 182 56.6
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 1.3e-47 194.5 185 56.2
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.5e-46 190.3 177 55.9
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 3.6e-45 186.4 250 42.4
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 7.2e-38 162.2 100 73.0
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.4e-36 157.9 111 64.0
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 3.0e-36 156.8 130 58.5
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 9.8e-35 151.8 109 67.9
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 5.9e-32 142.5 111 62.2
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 1.0e-31 141.7 212 42.5
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 2.3e-31 140.6 86 68.6
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 5.2e-28 129.4 286 34.3
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 1.1e-25 121.7 108 56.5
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.4e-25 121.3 91 63.7
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 6.8e-20 102.4 115 49.6
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 1.6e-16 91.3 146 48.6
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 1.3e-15 88.2 101 49.5
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 1.9e-14 84.3 65 58.5
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 6.2e-13 79.3 50 72.0
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 5.8e-11 72.8 81 46.9
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 1.7e-10 71.2 37 75.7
PSO447G0350 Papaver somniferum HOM05D001659 ORTHO05D001659 2.2e-10 70.9 174 31.6
Gohir.D02G197300 Gossypium hirsutum HOM05D001659 ORTHO05D001659 5.4e-09 66.2 174 30.5
Manes.06G012700 Manihot esculenta HOM05D001659 ORTHO05D001659 5.4e-09 66.2 174 29.9
RcHm_v2.0_Chr4g0397111 Rosa chinensis HOM05D001659 ORTHO05D001659 7.1e-09 65.9 201 29.4
arahy.Tifrunner.gnm1.ann1.6YT2J6 Arachis hypogaea HOM05D001659 ORTHO05D001659 1.6e-08 64.7 191 29.3
TWI23G1163 Tripterygium wilfordii HOM05D001659 ORTHO05D001659 1.6e-08 64.7 174 29.3
Actinidia28056 Actinidia chinensis HOM05D001659 ORTHO05D001659 2.1e-08 64.3 174 29.9
Hund06382 Selenicereus undatus HOM05D001659 ORTHO05D001659 2.1e-08 64.3 174 29.9
Phvul.002G209100 Phaseolus vulgaris HOM05D001659 ORTHO05D001659 3.5e-08 63.5 174 29.9
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 6.0e-08 62.8 95 42.1
FAN07G0088 Fragaria x ananassa HOM05D001659 ORTHO05D001659 1.0e-07 62.0 177 28.8
Os02g0318100 Oryza sativa ssp. japonica HOM05D001659 ORTHO05D001659 1.0e-07 62.0 196 28.1
FvH4_4g05930 Fragaria vesca HOM05D001659 ORTHO05D001659 2.3e-07 60.8 191 28.3
FAN12G0150 Fragaria x ananassa HOM05D001659 ORTHO05D001659 2.3e-07 60.8 191 28.3
FAN17G3134 Fragaria x ananassa HOM05D001659 ORTHO05D001659 2.3e-07 60.8 191 28.3
Peaxi162Scf00053g00524 Petunia axillaris HOM05D001659 ORTHO05D001659 3.0e-07 60.5 174 28.7
PRCOL_00006496 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 5.1e-07 59.7 53 58.5
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 6.6e-07 59.3 71 50.7
vmacro00077 Vaccinium macrocarpon HOM05D001659 ORTHO05D001659 1.1e-06 58.5 174 29.3
Aa31LG2G13660 Aethionema arabicum HOM05D001659 ORTHO05D001659 1.9e-06 57.8 176 28.4
Mapoly0009s0095 Marchantia polymorpha HOM05D001659 ORTHO05D001659 2.5e-06 57.4 174 27.6
Sopen08g024200 Solanum pennellii HOM05D001659 ORTHO05D001659 2.5e-06 57.4 176 28.4
PGSC0003DMG400007614 Solanum tuberosum HOM05D001659 ORTHO05D001659 2.5e-06 57.4 176 28.4
Pp3c2_12680 Physcomitrium patens HOM05D001659 ORTHO05D001659 3.3e-06 57.0 176 27.3
Thhalv10009342m.g Eutrema salsugineum HOM05D001659 ORTHO05D001659 4.3e-06 56.6 169 30.2
Peaxi162Scf00045g00628 Petunia axillaris HOM05D001659 ORTHO05D001659 7.3e-06 55.8 174 27.0


User provided reference genes

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