Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 3.8e-103 378.3 199 100.0
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 5.3e-81 304.7 210 82.9
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 7.9e-69 264.2 171 80.1
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 1.5e-43 180.3 157 57.3
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 2.0e-43 179.9 184 51.6
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 4.4e-43 178.7 157 56.1
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 9.7e-43 177.6 164 53.0
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 1.3e-42 177.2 147 56.5
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 2.2e-42 176.4 173 51.4
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 2.2e-42 176.4 135 60.7
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 3.7e-42 175.6 150 58.0
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 4.8e-42 175.3 152 58.6
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 6.3e-42 174.9 138 62.3
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 2.4e-41 172.9 159 54.7
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 2.4e-41 172.9 152 55.3
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 3.1e-41 172.6 192 49.0
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 3.1e-41 172.6 146 58.2
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 4.1e-41 172.2 157 56.1
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 9.1e-41 171.0 168 51.2
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 2.0e-40 169.9 168 53.6
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 2.7e-40 169.5 183 49.2
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 2.7e-40 169.5 150 55.3
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 4.5e-40 168.7 154 51.9
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 7.7e-40 167.9 157 54.1
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 1.3e-39 167.2 174 51.1
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 1.7e-39 166.8 188 47.3
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 1.7e-39 166.8 170 52.4
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 2.9e-39 166.0 146 57.5
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 3.8e-39 165.6 188 47.3
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 5.0e-39 165.2 170 51.8
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 6.5e-39 164.9 157 54.8
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 6.5e-39 164.9 157 54.8
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 6.5e-39 164.9 154 54.5
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 6.5e-39 164.9 157 55.4
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 1.1e-38 164.1 188 51.6
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 1.5e-38 163.7 170 48.8
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 1.5e-38 163.7 188 50.5
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 1.9e-38 163.3 188 45.7
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 1.9e-38 163.3 154 54.5
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 1.9e-38 163.3 155 54.8
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 2.5e-38 162.9 157 54.8
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 3.2e-38 162.5 181 47.5
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 4.2e-38 162.2 143 53.1
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 5.5e-38 161.8 154 55.2
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 5.5e-38 161.8 178 52.2
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 5.5e-38 161.8 138 58.0
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 5.5e-38 161.8 166 50.6
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 7.2e-38 161.4 203 47.8
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 7.2e-38 161.4 139 54.0
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 1.6e-37 160.2 156 50.6
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 1.6e-37 160.2 154 53.2
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 2.1e-37 159.8 139 53.2
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 2.1e-37 159.8 139 53.2
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 2.1e-37 159.8 178 50.0
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 3.6e-37 159.1 139 53.2
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 4.7e-37 158.7 139 54.0
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 4.7e-37 158.7 163 51.5
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 8.0e-37 157.9 178 49.4
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 1.0e-36 157.5 146 55.5
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 1.0e-36 157.5 145 52.4
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 1.4e-36 157.1 138 52.9
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 1.4e-36 157.1 138 52.9
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 2.3e-36 156.4 185 48.1
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 3.0e-36 156.0 190 47.4
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 3.0e-36 156.0 139 52.5
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 5.2e-36 155.2 192 44.8
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 6.8e-36 154.8 188 44.7
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 8.8e-36 154.5 186 45.7
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 8.8e-36 154.5 177 46.3
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 2.6e-35 152.9 189 47.6
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 3.4e-35 152.5 145 51.7
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 4.4e-35 152.1 195 48.2
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 7.5e-35 151.4 180 48.9
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 3.7e-34 149.1 145 52.4
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 3.7e-34 149.1 143 53.8
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 4.8e-34 148.7 169 46.7
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 2.4e-33 146.4 145 51.7
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 3.1e-33 146.0 182 43.4
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 7.0e-33 144.8 176 46.0
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 1.6e-32 143.7 127 56.7
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 4.5e-32 142.1 145 48.3
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 4.5e-32 142.1 190 46.8
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 5.9e-32 141.7 145 48.3
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 7.7e-32 141.4 145 48.3
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 7.7e-32 141.4 145 48.3
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 1.7e-31 140.2 121 53.7
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 2.2e-31 139.8 143 49.7
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 6.5e-31 138.3 183 42.1
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 6.5e-31 138.3 183 42.1
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 2.3e-28 129.8 195 40.5
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 3.0e-28 129.4 197 42.6
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 5.2e-28 128.6 124 49.2
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 2.0e-27 126.7 106 51.9
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 7.5e-27 124.8 150 48.0
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 9.8e-27 124.4 124 48.4
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.7e-26 123.6 181 39.2
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 2.2e-26 123.2 106 56.6
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 4.9e-26 122.1 98 61.2
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 7.0e-25 118.2 103 59.2
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 5.9e-24 115.2 102 58.8
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 7.8e-24 114.8 120 45.8
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 7.8e-24 114.8 195 37.4
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 7.3e-22 108.2 171 38.0
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 1.8e-20 103.6 94 57.4
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 2.6e-19 99.8 78 57.7
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 3.4e-19 99.4 97 51.5
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 3.7e-18 95.9 94 53.2
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 6.4e-18 95.1 108 44.4
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 1.8e-17 93.6 187 34.2
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 3.5e-16 89.4 83 51.8
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 7.8e-16 88.2 118 40.7
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 7.8e-16 88.2 118 40.7
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.7e-15 87.0 100 51.0
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 5.0e-15 85.5 90 51.1
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 6.6e-15 85.1 85 51.8
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 3.3e-14 82.8 156 34.6
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 5.6e-14 82.0 106 40.6
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 3.6e-13 79.3 48 72.9
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 6.8e-12 75.1 68 52.9
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 1.9e-09 67.0 64 48.4
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 3.2e-09 66.2 104 39.4
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 4.1e-09 65.9 159 28.9
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 7.0e-09 65.1 68 45.6
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 1.2e-08 64.3 132 33.3
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 1.2e-08 64.3 107 37.4
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 3.5e-08 62.8 48 56.2
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 5.0e-07 58.9 64 45.3


User provided reference genes

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