Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 2.4e-246 855.1 456 100.0
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 1.6e-170 603.2 466 72.5
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 9.8e-123 444.5 461 56.2
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.7e-122 443.7 455 56.5
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 7.0e-121 438.3 460 55.4
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 9.2e-121 438.0 439 57.2
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 2.0e-120 436.8 362 62.7
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 5.9e-120 435.3 435 56.8
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.0e-119 434.5 455 54.7
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 1.0e-119 434.5 454 55.9
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.3e-119 434.1 459 54.7
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 8.6e-119 431.4 455 54.9
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 8.6e-119 431.4 460 55.0
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 5.6e-118 428.7 435 55.6
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.2e-117 427.6 464 53.0
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 4.7e-117 425.6 479 53.4
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.0e-116 424.5 458 52.8
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 1.4e-116 424.1 449 54.6
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.8e-116 423.7 434 56.2
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 2.3e-116 423.3 462 53.5
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 5.2e-116 422.2 462 53.5
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 8.9e-116 421.4 463 54.6
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.5e-115 420.6 432 54.6
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 3.4e-115 419.5 457 53.0
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 4.4e-115 419.1 461 52.7
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 1.7e-114 417.2 444 54.7
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 2.4e-113 413.3 464 53.9
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 2.4e-113 413.3 416 56.7
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 7.0e-113 411.8 433 53.3
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 1.2e-112 411.0 442 52.9
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 1.2e-112 411.0 442 53.6
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 1.2e-112 411.0 413 55.9
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 2.0e-112 410.2 422 55.5
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 2.0e-112 410.2 395 57.2
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 2.7e-112 409.8 464 53.9
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 3.5e-112 409.5 411 55.5
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 6.0e-112 408.7 473 51.6
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 7.8e-112 408.3 455 51.9
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 3.9e-111 406.0 461 51.2
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 6.6e-111 405.2 426 56.1
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 1.5e-110 404.1 455 51.2
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.5e-110 404.1 431 53.4
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.9e-110 403.7 431 53.4
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 5.6e-110 402.1 378 59.5
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 8.0e-109 398.3 464 50.0
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 8.0e-109 398.3 431 51.3
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 1.8e-108 397.1 434 52.8
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 2.3e-108 396.7 475 50.7
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 2.3e-108 396.7 442 53.2
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 3.1e-108 396.4 431 51.0
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 8.9e-108 394.8 399 55.4
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 8.9e-108 394.8 354 57.9
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 1.2e-107 394.4 419 52.7
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 1.2e-107 394.4 461 51.2
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.5e-107 394.0 440 50.5
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 2.0e-107 393.7 442 51.6
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 2.6e-107 393.3 458 49.6
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 2.6e-107 393.3 432 54.4
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 9.8e-107 391.3 441 50.3
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 1.7e-106 390.6 401 54.6
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 2.2e-106 390.2 456 49.3
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 2.2e-106 390.2 422 52.4
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 2.9e-106 389.8 331 61.3
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 3.7e-106 389.4 441 50.6
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 4.9e-106 389.0 447 52.6
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 1.4e-105 387.5 431 52.0
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 9.2e-105 384.8 466 48.7
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 1.6e-104 384.0 383 55.6
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 2.0e-104 383.6 480 48.8
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 2.0e-104 383.6 447 50.8
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 3.5e-104 382.9 441 51.2
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 6.0e-104 382.1 428 53.3
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 7.8e-104 381.7 416 53.4
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 7.8e-104 381.7 410 53.4
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.3e-103 380.2 410 53.9
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 2.3e-103 380.2 440 49.3
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 6.6e-103 378.6 433 50.6
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 1.9e-102 377.1 444 52.3
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 4.3e-102 375.9 433 50.8
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 7.3e-102 375.2 496 46.2
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 2.8e-101 373.2 439 49.0
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.8e-101 373.2 469 48.8
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 4.7e-101 372.5 478 47.7
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 4.7e-101 372.5 479 48.0
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 6.2e-101 372.1 414 50.7
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 8.1e-101 371.7 456 48.5
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 1.4e-100 370.9 439 48.7
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 3.1e-100 369.8 336 56.8
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 1.5e-99 367.5 441 49.7
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.5e-99 367.5 465 47.3
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 7.5e-99 365.2 423 51.3
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 4.9e-98 362.5 344 55.2
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.4e-97 360.9 458 48.5
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.9e-97 360.5 435 47.6
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 2.4e-97 360.1 433 49.2
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 3.2e-97 359.8 452 47.3
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 4.1e-97 359.4 403 50.9
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 4.1e-97 359.4 460 48.3
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 5.4e-97 359.0 408 49.8
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 9.2e-97 358.2 460 45.9
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.2e-96 357.8 462 47.6
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 2.1e-96 357.1 452 47.1
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 2.7e-96 356.7 484 47.1
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.5e-96 356.3 459 48.1
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 4.6e-96 355.9 406 50.7
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 7.8e-96 355.1 452 46.9
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 1.0e-95 354.8 386 52.3
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 4.3e-94 349.4 493 45.4
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 8.1e-93 345.1 384 53.1
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 1.4e-92 344.4 407 49.1
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 1.4e-92 344.4 407 49.1
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 1.4e-92 344.4 463 44.9
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 5.2e-92 342.4 314 57.3
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 2.6e-91 340.1 439 45.8
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 6.4e-90 335.5 385 50.6
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 8.4e-90 335.1 415 47.7
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 3.2e-89 333.2 319 55.5
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 4.1e-89 332.8 453 46.1
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 2.7e-88 330.1 390 49.0
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 3.5e-88 329.7 450 44.7
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 6.0e-88 328.9 330 52.1
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 3.9e-87 326.2 264 62.5
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 5.1e-87 325.9 404 47.3
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 2.5e-86 323.6 277 61.7
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 3.3e-86 323.2 401 47.4
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 3.3e-86 323.2 398 50.8
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 9.6e-86 321.6 392 47.4
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 2.9e-82 310.1 468 41.2
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 1.4e-81 307.8 406 45.6
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.6e-80 304.3 493 41.8
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 7.8e-80 302.0 326 53.4
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 3.3e-78 296.6 286 55.9
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 3.6e-77 293.1 379 44.9
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 8.1e-77 292.0 412 45.9
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 1.4e-76 291.2 413 46.0
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.5e-75 287.7 360 50.0
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 2.0e-75 287.3 399 45.6
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 9.9e-75 285.0 442 43.0
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 3.8e-74 283.1 411 44.5
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 3.8e-74 283.1 525 38.3
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 6.7e-71 272.3 437 43.2
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 1.5e-70 271.2 479 39.2
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 2.9e-66 256.9 367 41.7
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 3.2e-65 253.4 329 45.9
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 4.6e-64 249.6 373 42.4
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 6.0e-64 249.2 373 42.4
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 7.4e-62 242.3 358 43.6
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 6.9e-60 235.7 360 41.7
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 3.4e-59 233.4 262 53.1
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 1.7e-58 231.1 207 57.5
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 3.7e-45 186.8 470 32.8
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.7e-42 177.9 172 54.1
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 7.9e-40 169.1 165 57.6
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 1.4e-39 168.3 164 57.3
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.5e-33 147.5 153 52.9
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 8.8e-31 139.0 185 41.6
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 2.6e-30 137.5 125 60.8
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 4.8e-21 106.7 120 50.0
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.2e-18 97.8 121 44.6
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.2e-18 97.8 83 60.2
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 5.0e-18 96.7 166 37.3
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 3.2e-17 94.0 94 54.3
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 7.5e-14 82.8 302 30.1
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 1.7e-13 81.6 64 64.1
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 3.7e-13 80.5 167 38.9
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 4.8e-13 80.1 72 59.7
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 1.1e-12 79.0 75 49.3
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 1.3e-10 72.0 71 49.3
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 5.0e-10 70.1 71 50.7
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 6.6e-10 69.7 119 36.1
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 2.5e-09 67.8 78 46.2
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 3.3e-09 67.4 116 38.8
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 8.0e-08 62.8 132 40.9
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 1.4e-07 62.0 116 37.9
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 1.8e-07 61.6 63 47.6
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 1.8e-07 61.6 63 47.6
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 2.3e-07 61.2 100 40.0
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 2.3e-07 61.2 38 76.3


User provided reference genes

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