Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 3.2e-176 621.7 324 100.0
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 8.5e-137 490.7 315 79.7
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 1.9e-104 383.3 313 64.9
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 5.5e-104 381.7 315 64.4
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 7.2e-104 381.3 309 66.3
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 9.4e-104 380.9 315 64.8
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 2.1e-103 379.8 320 62.2
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 1.8e-102 376.7 320 62.2
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 2.3e-102 376.3 319 62.4
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 4.0e-102 375.6 314 64.6
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 2.0e-101 373.2 314 64.0
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 2.6e-101 372.9 316 63.6
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 5.7e-101 371.7 327 59.6
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 7.5e-101 371.3 311 63.3
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 9.8e-101 370.9 315 63.2
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 1.3e-100 370.5 315 63.2
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 1.3e-100 370.5 313 62.3
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 2.2e-100 369.8 311 63.7
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 2.8e-100 369.4 313 62.6
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 2.8e-100 369.4 312 62.2
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 4.8e-100 368.6 320 61.2
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 4.8e-100 368.6 309 65.0
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 8.3e-100 367.9 313 62.9
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 1.1e-99 367.5 321 59.8
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 1.1e-99 367.5 319 61.8
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 1.4e-99 367.1 313 62.3
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.8e-99 366.7 313 62.3
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 2.4e-99 366.3 310 61.6
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 9.1e-99 364.4 312 62.5
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 1.2e-98 364.0 317 61.5
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 1.2e-98 364.0 321 58.9
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 1.6e-98 363.6 313 61.7
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 1.6e-98 363.6 308 62.0
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 2.0e-98 363.2 316 62.7
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 3.5e-98 362.5 318 60.1
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 5.9e-98 361.7 316 59.2
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 5.9e-98 361.7 311 60.8
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 7.7e-98 361.3 313 61.7
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.7e-97 360.1 312 62.8
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 1.7e-97 360.1 324 59.3
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 1.7e-97 360.1 324 59.3
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 1.7e-97 360.1 324 59.3
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 2.3e-97 359.8 310 61.9
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 2.3e-97 359.8 322 59.0
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 2.9e-97 359.4 314 59.9
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 5.0e-97 358.6 307 60.6
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 8.6e-97 357.8 308 61.0
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.1e-96 357.5 314 61.1
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 1.5e-96 357.1 312 61.9
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 2.5e-96 356.3 311 59.5
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 2.5e-96 356.3 299 62.2
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 2.5e-96 356.3 316 61.1
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 3.3e-96 355.9 319 59.9
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 4.2e-96 355.5 312 59.9
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 5.5e-96 355.1 311 60.8
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 5.5e-96 355.1 318 60.7
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 9.5e-96 354.4 312 61.9
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 9.5e-96 354.4 309 60.8
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 1.2e-95 354.0 321 59.5
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 3.6e-95 352.4 314 59.2
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 4.7e-95 352.1 306 62.7
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 6.1e-95 351.7 318 60.1
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 6.1e-95 351.7 326 58.9
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 8.0e-95 351.3 342 56.1
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 8.0e-95 351.3 317 60.6
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 8.0e-95 351.3 315 59.7
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 1.0e-94 350.9 317 58.0
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 1.8e-94 350.1 316 59.5
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 2.3e-94 349.7 321 59.8
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 2.3e-94 349.7 313 58.8
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 2.3e-94 349.7 318 59.7
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 2.3e-94 349.7 317 59.6
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 3.0e-94 349.4 307 63.5
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 3.0e-94 349.4 318 59.7
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 4.0e-94 349.0 318 58.2
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 4.0e-94 349.0 312 59.6
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 6.8e-94 348.2 325 58.8
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 6.8e-94 348.2 318 59.7
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 1.2e-93 347.4 312 61.2
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.5e-93 347.1 315 58.1
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 2.0e-93 346.7 314 58.3
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 2.6e-93 346.3 302 60.3
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 3.4e-93 345.9 305 60.7
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 4.4e-93 345.5 304 60.2
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 4.4e-93 345.5 314 58.3
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 7.5e-93 344.7 317 59.0
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 9.8e-93 344.4 314 58.0
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 1.3e-92 344.0 337 54.6
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 2.2e-92 343.2 314 58.0
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.1e-91 340.9 307 61.9
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 4.5e-90 335.5 331 54.1
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 6.6e-89 331.6 279 64.2
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 2.8e-87 326.2 312 58.0
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 4.0e-86 322.4 308 57.5
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 1.2e-85 320.9 274 63.1
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 1.2e-85 320.9 285 60.0
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.2e-85 320.9 303 57.4
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 9.8e-85 317.8 303 56.8
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 2.2e-84 316.6 318 55.7
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.5e-80 303.9 324 50.9
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 7.3e-80 301.6 379 47.0
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 6.4e-76 288.5 234 63.7
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 2.4e-75 286.6 354 48.6
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 3.5e-74 282.7 306 53.3
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 2.8e-71 273.1 232 63.4
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 2.3e-70 270.0 235 60.4
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 3.1e-70 269.6 230 61.3
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 4.0e-70 269.2 339 50.7
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.5e-64 250.8 277 54.5
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 9.9e-61 238.0 175 66.3
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 5.8e-53 212.2 200 57.5
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 7.6e-53 211.8 204 55.9
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 4.9e-52 209.1 216 55.6
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 5.3e-46 189.1 195 53.8
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 9.6e-40 168.3 295 41.4
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 4.5e-37 159.5 155 56.1
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 4.9e-36 156.0 293 40.3
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.9e-33 146.4 230 41.3
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.1e-30 136.7 188 44.7
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 1.3e-28 131.3 130 53.8
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 5.5e-27 125.9 304 32.6
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.0e-25 121.7 163 45.4
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 8.2e-23 112.1 122 52.5
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 1.8e-22 110.9 113 55.8
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 1.9e-19 100.9 164 41.5
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 1.6e-18 97.8 121 49.6
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 2.3e-17 94.0 147 39.5
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 2.0e-16 90.9 63 74.6
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 6.9e-14 82.4 59 59.3
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.5e-13 81.3 77 53.2
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.5e-13 81.3 82 48.8
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 2.2e-12 77.4 89 47.2
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 5.1e-09 66.2 83 44.6
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 5.1e-09 66.2 83 44.6
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 3.3e-08 63.5 69 52.2
Actinidia30088 Actinidia chinensis HOM05D005470 ORTHO05D057321 1.1e-06 58.5 44 72.7
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.8e-06 57.8 60 51.7
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 3.1e-06 57.0 119 39.5
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 7.0e-06 55.8 45 51.1


User provided reference genes

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