Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 4.2e-293 1010.7 556 100.0
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 8.2e-257 890.2 556 85.4
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.5e-144 516.5 578 52.4
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 7.2e-144 515.0 531 51.2
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 4.7e-143 512.3 522 51.5
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 4.7e-143 512.3 521 52.0
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 5.2e-142 508.8 542 50.2
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 8.8e-142 508.1 504 52.4
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 3.3e-141 506.1 522 50.6
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 5.7e-141 505.4 352 67.9
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 5.7e-141 505.4 539 50.3
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 1.3e-140 504.2 354 67.2
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.8e-140 502.3 513 51.9
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 4.8e-140 502.3 517 51.8
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 6.3e-140 501.9 583 46.8
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.1e-139 501.1 524 51.1
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.4e-139 500.7 546 49.6
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 3.1e-139 499.6 547 49.5
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 3.1e-139 499.6 568 48.6
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 4.1e-139 499.2 538 49.8
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 5.3e-139 498.8 503 51.7
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 9.1e-139 498.0 517 50.5
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.2e-138 497.7 352 66.5
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 2.6e-138 496.5 536 50.4
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 3.5e-138 496.1 517 51.3
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 5.9e-138 495.4 517 51.5
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 7.7e-138 495.0 528 49.8
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.0e-137 494.6 521 49.1
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 2.9e-137 493.0 565 48.0
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 5.0e-137 492.3 520 49.8
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 6.5e-137 491.9 351 66.4
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 8.5e-137 491.5 515 49.1
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 1.5e-136 490.7 536 49.8
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.5e-136 490.7 504 51.6
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 2.5e-136 490.0 525 50.1
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 2.5e-136 490.0 514 49.8
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 3.2e-136 489.6 558 47.7
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 9.4e-136 488.0 546 51.6
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.2e-135 487.6 514 50.4
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 2.1e-135 486.9 351 65.2
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 2.1e-135 486.9 350 65.7
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 2.7e-135 486.5 515 48.9
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 4.7e-135 485.7 510 50.0
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 4.7e-135 485.7 605 45.1
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 6.1e-135 485.3 566 47.5
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 8.0e-135 485.0 563 47.4
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 1.0e-134 484.6 512 49.8
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.4e-134 484.2 603 45.4
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.3e-134 483.4 604 45.4
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 3.0e-134 483.0 519 49.7
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 4.0e-134 482.6 539 48.2
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 5.2e-134 482.3 515 48.9
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 5.2e-134 482.3 353 64.0
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 6.7e-134 481.9 356 63.2
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 1.2e-133 481.1 540 47.4
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.5e-133 480.7 514 48.8
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.6e-133 479.9 514 48.2
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.3e-133 479.6 536 48.3
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 3.3e-133 479.6 351 62.7
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 5.7e-133 478.8 514 48.6
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.8e-132 476.5 351 62.7
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 3.7e-132 476.1 351 62.7
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 3.7e-132 476.1 352 63.6
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 3.7e-132 476.1 553 47.6
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 6.3e-132 475.3 351 63.0
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.4e-131 474.2 519 48.4
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 2.4e-131 473.4 521 48.0
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 4.1e-131 472.6 566 45.4
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 4.1e-131 472.6 553 46.7
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 7.0e-131 471.9 349 61.3
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 9.1e-131 471.5 527 53.1
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 9.1e-131 471.5 572 46.3
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 3.5e-130 469.5 351 62.1
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 3.5e-130 469.5 354 63.6
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 5.9e-130 468.8 351 64.7
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 7.7e-130 468.4 354 62.7
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 7.7e-130 468.4 609 43.0
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.0e-129 468.0 504 48.2
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 1.7e-129 467.2 529 46.9
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.7e-129 467.2 526 47.3
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 2.2e-129 466.8 508 49.8
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 2.2e-129 466.8 594 47.0
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 3.8e-129 466.1 529 47.6
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 1.5e-128 464.2 526 46.6
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 4.2e-128 462.6 513 47.8
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 9.4e-128 461.5 550 46.5
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 4.7e-127 459.1 526 49.4
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 6.1e-127 458.8 524 47.1
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 6.1e-127 458.8 529 46.9
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 8.0e-127 458.4 523 47.6
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 8.0e-127 458.4 508 47.6
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.0e-126 458.0 566 44.7
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 5.2e-126 455.7 552 46.0
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 2.6e-125 453.4 352 60.8
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 5.7e-125 452.2 353 60.6
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 5.7e-125 452.2 530 45.5
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 6.3e-124 448.7 537 45.8
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 6.3e-124 448.7 517 47.2
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 6.3e-124 448.7 502 47.8
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 2.4e-123 446.8 352 59.9
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 4.1e-123 446.0 351 59.5
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 6.5e-121 438.7 511 45.8
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 2.5e-120 436.8 339 60.8
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 3.2e-120 436.4 524 45.0
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 2.1e-119 433.7 351 56.4
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 1.2e-117 427.9 523 45.7
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 1.5e-117 427.6 610 43.1
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 1.5e-117 427.6 549 44.6
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 1.3e-116 424.5 310 63.2
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 1.7e-116 424.1 297 65.3
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.4e-115 421.0 312 62.2
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 1.6e-114 417.5 526 44.5
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 1.3e-113 414.5 351 55.6
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 6.6e-113 412.1 514 42.8
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 1.0e-110 404.8 375 53.1
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 1.5e-109 401.0 345 54.8
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 2.2e-108 397.1 320 58.8
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 5.0e-105 386.0 268 65.3
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.0e-101 374.0 279 60.2
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 2.9e-100 370.2 352 50.9
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 4.9e-100 369.4 524 41.8
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 1.4e-99 367.9 349 51.3
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.4e-99 367.1 225 72.9
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 3.2e-99 366.7 347 49.9
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 3.2e-99 366.7 352 50.9
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 4.1e-99 366.3 350 50.9
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 4.1e-99 366.3 352 50.9
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 5.4e-99 365.9 348 50.3
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 9.2e-99 365.2 463 45.1
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 1.2e-98 364.8 353 50.4
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 1.6e-98 364.4 353 50.1
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 1.6e-98 364.4 353 50.1
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 3.5e-98 363.2 243 67.1
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 3.5e-98 363.2 353 50.4
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 7.8e-98 362.1 352 50.0
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 7.8e-98 362.1 353 50.1
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 7.8e-98 362.1 353 50.1
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 2.6e-93 347.1 527 40.6
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.9e-92 343.6 298 54.0
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 1.1e-91 341.7 354 48.3
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 1.1e-91 341.7 354 48.3
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 1.9e-91 340.9 353 48.2
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 1.9e-91 340.9 353 48.2
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 4.6e-90 336.3 465 41.9
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.1e-86 325.1 434 44.7
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.4e-86 324.7 207 71.0
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.0e-85 320.9 207 70.0
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 1.7e-84 317.8 299 50.2
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.8e-79 300.4 409 40.6
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 2.4e-78 297.4 184 73.4
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 3.1e-78 297.0 234 61.1
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.0e-77 294.3 248 56.9
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 4.9e-60 236.5 279 55.6
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 3.1e-54 217.2 129 73.6
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 3.5e-50 203.8 164 58.5
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 3.7e-47 193.7 574 28.9
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.6e-42 178.3 251 37.8
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 1.8e-41 174.9 192 45.8
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.9e-40 171.4 322 35.4
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 2.0e-37 161.4 160 52.5
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.2e-36 157.9 99 69.7
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 6.1e-34 149.8 125 58.4
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 2.2e-31 141.4 333 32.4
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 2.2e-31 141.4 92 68.5
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.8e-30 138.3 82 76.8
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 2.0e-29 134.8 291 34.4
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 4.7e-26 123.6 82 68.3
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 4.7e-26 123.6 66 84.8
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 6.3e-23 113.2 65 80.0
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 1.7e-20 105.1 98 46.9
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 2.2e-20 104.8 300 30.0
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.8e-07 61.2 221 27.6
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 3.7e-07 60.8 57 56.1


User provided reference genes

Program Settings