Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 6.5e-224 780.4 393 100.0
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 4.6e-137 491.9 398 61.1
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 3.9e-136 488.8 394 58.6
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 6.7e-136 488.0 394 61.2
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.9e-135 486.5 394 58.4
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 9.6e-135 484.2 392 59.9
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 4.8e-134 481.9 394 59.9
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 5.3e-133 478.4 394 58.9
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 1.2e-132 477.2 396 60.1
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 4.5e-132 475.3 398 59.0
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 4.5e-132 475.3 394 57.6
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 9.9e-132 474.2 396 59.3
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 1.7e-131 473.4 394 58.1
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 3.8e-131 472.2 395 58.5
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 3.8e-131 472.2 394 58.4
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 3.8e-131 472.2 396 59.6
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 4.9e-131 471.9 392 58.9
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 6.4e-131 471.5 396 59.3
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 8.4e-131 471.1 392 59.2
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 8.4e-131 471.1 392 57.9
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 1.4e-130 470.3 396 60.4
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.9e-130 469.9 396 59.1
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 5.5e-130 468.4 396 58.6
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 7.1e-130 468.0 398 58.3
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 9.3e-130 467.6 395 58.2
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 9.3e-130 467.6 392 57.9
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 2.1e-129 466.5 394 58.9
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 2.7e-129 466.1 398 59.5
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 2.7e-129 466.1 395 58.2
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 4.6e-129 465.3 396 58.3
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 4.6e-129 465.3 396 58.1
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 4.6e-129 465.3 394 58.4
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 6.0e-129 464.9 395 57.7
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 1.0e-128 464.2 391 57.3
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 1.3e-128 463.8 393 58.8
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 1.3e-128 463.8 391 59.1
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.8e-128 463.4 396 57.1
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.8e-128 463.4 397 58.2
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 5.1e-128 461.8 395 58.5
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 5.1e-128 461.8 393 57.5
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 8.7e-128 461.1 395 57.2
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 1.1e-127 460.7 394 56.3
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 1.5e-127 460.3 394 57.1
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.9e-127 459.9 396 56.3
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 1.9e-127 459.9 388 58.0
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 1.9e-127 459.9 398 56.0
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 5.6e-127 458.4 396 57.6
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 7.4e-127 458.0 394 56.1
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 7.4e-127 458.0 396 57.8
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 9.6e-127 457.6 397 57.7
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 1.6e-126 456.8 404 56.2
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.6e-126 456.8 420 54.3
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.1e-126 456.4 394 57.4
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 2.8e-126 456.1 396 57.3
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 1.1e-125 454.1 394 56.9
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 4.0e-125 452.2 395 55.7
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 4.0e-125 452.2 398 53.0
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 5.3e-125 451.8 416 54.6
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 6.9e-125 451.4 395 58.5
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 6.9e-125 451.4 394 58.4
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 9.0e-125 451.1 411 55.7
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 9.0e-125 451.1 394 55.3
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.7e-123 446.8 392 56.1
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.9e-123 446.0 391 56.0
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.4e-122 443.7 399 56.4
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 3.2e-122 442.6 433 51.3
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.1e-121 439.9 394 56.3
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 2.1e-121 439.9 391 54.7
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 2.7e-121 439.5 395 53.7
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 7.9e-121 438.0 391 56.0
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 1.8e-120 436.8 396 54.8
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 3.0e-120 436.0 395 55.7
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 3.9e-120 435.6 407 53.3
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 3.7e-118 429.1 394 54.3
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.1e-117 427.6 394 52.3
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 4.1e-117 425.6 399 55.4
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.7e-115 420.2 396 52.8
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 3.8e-115 419.1 396 53.3
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 3.8e-115 419.1 394 54.3
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.0e-115 418.7 395 52.7
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 6.5e-115 418.3 398 51.3
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.4e-114 417.2 395 51.9
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 7.2e-114 414.8 399 52.1
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.7e-113 412.9 395 54.2
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 6.1e-113 411.8 393 51.9
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 1.0e-112 411.0 397 50.6
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 1.3e-112 410.6 395 51.9
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.7e-112 407.9 392 53.6
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 3.3e-111 406.0 344 57.6
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 7.4e-111 404.8 394 50.5
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.8e-110 402.9 343 59.5
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 3.7e-110 402.5 377 52.8
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 3.7e-110 402.5 492 45.1
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 4.8e-110 402.1 393 53.4
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 5.0e-107 392.1 394 49.0
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 8.5e-107 391.3 399 50.1
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 1.1e-106 391.0 408 48.8
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.1e-105 385.2 403 48.4
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 1.5e-103 380.6 414 47.8
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 3.3e-103 379.4 325 58.2
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 1.7e-102 377.1 400 47.5
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.9e-101 371.7 405 46.7
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.2e-100 370.9 288 63.5
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 2.0e-100 370.2 409 45.7
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 1.4e-98 364.0 330 55.5
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 1.4e-98 364.0 328 55.2
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 9.4e-98 361.3 361 50.4
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 1.0e-96 357.8 395 49.1
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.8e-96 357.1 343 49.9
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 8.8e-96 354.8 409 47.7
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 2.0e-95 353.6 395 48.1
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 3.3e-95 352.8 394 46.7
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 9.7e-95 351.3 330 54.5
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 9.1e-93 344.7 404 48.8
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.2e-92 344.4 293 57.7
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 1.6e-92 344.0 407 49.1
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 7.7e-92 341.7 399 47.1
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 1.7e-91 340.5 415 46.0
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 4.2e-90 335.9 393 46.6
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 8.0e-89 331.6 398 45.5
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 4.0e-88 329.3 398 45.2
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 5.2e-88 328.9 340 50.9
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 4.4e-87 325.9 264 63.3
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 1.6e-84 317.4 332 48.8
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 3.5e-84 316.2 394 43.1
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 8.8e-80 301.6 549 35.3
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.2e-76 291.2 334 48.5
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.2e-76 291.2 278 50.7
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.0e-69 265.4 349 40.7
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 2.0e-68 263.8 391 41.2
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 5.4e-61 239.2 453 35.3
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 2.3e-59 233.8 258 49.2
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 5.4e-53 212.6 393 34.1
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 2.7e-52 210.3 145 64.8
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.0e-47 194.1 196 48.0
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.1e-45 186.4 133 57.1
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 3.0e-43 180.3 380 33.7
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.0e-40 169.9 124 54.8
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 1.7e-35 154.5 188 47.3
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.0e-32 143.3 171 42.7
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.1e-29 135.2 199 39.7
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.8e-28 129.0 142 50.0
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.2e-23 115.2 76 64.5
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 6.0e-20 102.8 76 59.2
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.8e-17 94.0 116 37.1
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 3.7e-17 93.6 53 71.7
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 1.1e-16 92.0 86 53.5
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.5e-15 88.2 52 71.2
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.5e-15 88.2 52 71.2
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 2.0e-15 87.8 52 75.0
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 2.9e-14 84.0 52 69.2
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 2.9e-14 84.0 52 69.2
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.2e-13 80.1 53 64.2
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 5.5e-13 79.7 52 65.4
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.1e-11 73.2 53 62.3
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.7e-11 72.8 54 55.6
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.4e-08 65.1 73 45.2
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 3.1e-08 63.9 73 45.2


User provided reference genes

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