Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb064410 Zea mays HOM05D003029 ORTHO05D003413 0.0e+00 1095.5 794 100.0
Zm00001eb210840 Zea mays HOM05D003029 ORTHO05D003413 2.1e-245 852.8 799 70.0
Nn3g20075 Nelumbo nucifera HOM05D003029 ORTHO05D003413 5.4e-28 130.6 222 41.4
TAR636G0249 Trochodendron aralioides HOM05D003029 ORTHO05D003413 9.3e-28 129.8 221 39.4
Haze_11649 Corylus avellana HOM05D003029 ORTHO05D003413 8.7e-26 123.2 218 38.1
Cfa014958 Carpinus fangiana HOM05D003029 ORTHO05D003413 5.6e-25 120.6 220 36.8
Zm00001eb197330 Zea mays HOM05D000221 ORTHO05D002670 9.6e-25 119.8 88 75.0
Manes.12G049400 Manihot esculenta HOM05D003029 ORTHO05D003413 1.3e-24 119.4 189 46.0
Nn3g20072 Nelumbo nucifera HOM05D003029 ORTHO05D003413 1.3e-24 119.4 222 39.6
COL.COLO4_20221 Corchorus olitorius HOM05D003029 ORTHO05D003413 2.1e-24 118.6 209 37.3
TAR362G1056 Trochodendron aralioides HOM05D003029 ORTHO05D003413 2.1e-24 118.6 222 40.5
Thecc.04G195700 Theobroma cacao HOM05D003029 ORTHO05D003413 1.1e-23 116.3 212 39.6
Manes.13G051200 Manihot esculenta HOM05D003029 ORTHO05D003413 1.4e-23 115.9 224 40.2
CSS0049755 Camellia sinensis var. sinensis HOM05D003029 ORTHO05D003413 4.0e-23 114.4 192 39.1
Prupe.1G164200 Prunus persica HOM05D003029 ORTHO05D003413 4.0e-23 114.4 197 39.6
Medtr8g081570 Medicago truncatula HOM05D003029 ORTHO05D003413 5.3e-23 114.0 221 38.0
TAR365G0314 Trochodendron aralioides HOM05D003029 ORTHO05D003413 5.3e-23 114.0 224 40.6
Duzib212G0885 Durio zibethinus HOM05D003029 ORTHO05D003413 9.0e-23 113.2 211 38.4
FAN07G2221 Fragaria x ananassa HOM05D003029 ORTHO05D003413 9.0e-23 113.2 221 35.3
FvH4_4g13340 Fragaria vesca HOM05D003029 ORTHO05D003413 1.2e-22 112.8 222 35.6
FAN12G1114 Fragaria x ananassa HOM05D003029 ORTHO05D003413 1.2e-22 112.8 222 35.6
Actinidia35843 Actinidia chinensis HOM05D003029 ORTHO05D003413 1.5e-22 112.5 209 37.8
FAN17G0226 Fragaria x ananassa HOM05D003029 ORTHO05D003413 1.5e-22 112.5 222 35.1
PSO017G1724 Papaver somniferum HOM05D003029 ORTHO05D003413 1.5e-22 112.5 204 40.2
Gohir.D10G138100 Gossypium hirsutum HOM05D003029 ORTHO05D003413 4.5e-22 110.9 218 37.2
Gorai.011G153200 Gossypium raimondii HOM05D003029 ORTHO05D003413 4.5e-22 110.9 218 37.2
Gohir.D02G022800 Gossypium hirsutum HOM05D003029 ORTHO05D003413 7.6e-22 110.2 209 37.3
Lalb_Chr23g0278361 Lupinus albus HOM05D003029 ORTHO05D003413 1.3e-21 109.4 184 42.4
CiPaw.01G117300 Carya illinoinensis HOM05D003029 ORTHO05D003413 1.7e-21 109.0 220 35.5
Aqoxy2G03937 Aquilegia oxysepala HOM05D003029 ORTHO05D003413 2.2e-21 108.6 213 37.1
Atru.chr6.1447 Acer truncatum HOM05D003029 ORTHO05D003413 2.9e-21 108.2 185 42.2
Gohir.A02G019500 Gossypium hirsutum HOM05D003029 ORTHO05D003413 3.8e-21 107.8 209 37.8
FAN22G0425 Fragaria x ananassa HOM05D003029 ORTHO05D003413 4.9e-21 107.5 222 34.7
Sp3g06230 Schrenkiella parvula HOM05D003029 ORTHO05D003413 6.4e-21 107.1 209 37.8
GSVIVG01021020001 Vitis vinifera HOM05D003029 ORTHO05D003413 6.4e-21 107.1 210 36.2
Carub.0008s0826 Capsella rubella HOM05D003029 ORTHO05D003413 8.4e-21 106.7 210 36.2
Atru.chr4.1590 Acer truncatum HOM05D003029 ORTHO05D003413 1.4e-20 105.9 224 34.4
Prupe.8G196300 Prunus persica HOM05D003029 ORTHO05D003413 1.4e-20 105.9 182 41.8
HPP92_025250 Vanilla planifolia HOM05D003029 ORTHO05D003413 1.9e-20 105.5 195 37.9
C03p42770 Brassica napus HOM05D003029 ORTHO05D003413 3.2e-20 104.8 180 42.2
BolC3t16546H Brassica oleracea HOM05D003029 ORTHO05D003413 3.2e-20 104.8 180 42.2
Lj4g0000581 Lotus japonicus HOM05D003029 ORTHO05D003413 3.2e-20 104.8 189 39.7
BcaC05g29857 Brassica carinata HOM05D003029 ORTHO05D003413 4.2e-20 104.4 185 38.9
Glyma.08G110100 Glycine max HOM05D003029 ORTHO05D003413 5.5e-20 104.0 221 37.1
PSO063G2363 Papaver somniferum HOM05D003029 ORTHO05D003413 5.5e-20 104.0 215 38.1
RcHm_v2.0_Chr4g0413691 Rosa chinensis HOM05D003029 ORTHO05D003413 5.5e-20 104.0 202 38.6
TWI36G1114 Tripterygium wilfordii HOM05D003029 ORTHO05D003413 7.1e-20 103.6 297 31.6
Gohir.A10G127900 Gossypium hirsutum HOM05D003029 ORTHO05D003413 9.3e-20 103.2 211 37.0
Glyma.05G152400 Glycine max HOM05D003029 ORTHO05D003413 1.2e-19 102.8 195 39.5
TWI75G0963 Tripterygium wilfordii HOM05D003029 ORTHO05D003413 1.2e-19 102.8 208 37.0
Duzib268G0331 Durio zibethinus HOM05D003029 ORTHO05D003413 1.6e-19 102.4 212 38.7
BNapus_Darmor_BZH_scaffold_109p00150 Brassica napus HOM05D003029 ORTHO05D003413 2.7e-19 101.7 193 40.4
Sabra17G0052100 Salix brachista HOM05D003029 ORTHO05D003413 2.7e-19 101.7 240 34.6
Actinidia21255 Actinidia chinensis HOM05D003029 ORTHO05D003413 3.5e-19 101.3 208 35.1
C07p39290 Brassica napus HOM05D003029 ORTHO05D003413 3.5e-19 101.3 210 36.7
BolC7t44449H Brassica oleracea HOM05D003029 ORTHO05D003413 3.5e-19 101.3 210 36.7
ClCG06G007970 Citrullus lanatus HOM05D003029 ORTHO05D003413 3.5e-19 101.3 216 35.6
A06p39050 Brassica napus HOM05D003029 ORTHO05D003413 4.6e-19 100.9 210 36.7
CiPaw.02G064700 Carya illinoinensis HOM05D003029 ORTHO05D003413 4.6e-19 100.9 202 36.6
Duzib151G1197 Durio zibethinus HOM05D003029 ORTHO05D003413 4.6e-19 100.9 211 37.9
Nitab4.5_0000676g0030 Nicotiana tabacum HOM05D003029 ORTHO05D003413 4.6e-19 100.9 246 34.1
TWI18G0251 Tripterygium wilfordii HOM05D003029 ORTHO05D003413 4.6e-19 100.9 228 35.5
Thhalv10020618m.g Eutrema salsugineum HOM05D003029 ORTHO05D003413 6.0e-19 100.5 189 38.1
Glyma.11G255200 Glycine max HOM05D003029 ORTHO05D003413 6.0e-19 100.5 225 34.2
Gorai.005G028200 Gossypium raimondii HOM05D003029 ORTHO05D003413 6.0e-19 100.5 206 35.4
Gorai.006G223500 Gossypium raimondii HOM05D003029 ORTHO05D003413 6.0e-19 100.5 195 37.4
BcaC06g30775 Brassica carinata HOM05D003029 ORTHO05D003413 7.9e-19 100.1 210 36.2
Glyma.18G001900 Glycine max HOM05D003029 ORTHO05D003413 7.9e-19 100.1 187 38.5
VMungo0251G2529 Vigna mungo HOM05D003029 ORTHO05D003413 7.9e-19 100.1 190 37.4
BcaC05g29734 Brassica carinata HOM05D003029 ORTHO05D003413 1.0e-18 99.8 189 38.1
Peaxi162Scf00423g00411 Petunia axillaris HOM05D003029 ORTHO05D003413 1.0e-18 99.8 180 37.8
Gohir.D09G199800 Gossypium hirsutum HOM05D003029 ORTHO05D003413 1.3e-18 99.4 195 37.4
MD04G1017100 Malus domestica HOM05D003029 ORTHO05D003413 1.3e-18 99.4 204 34.8
BraA01t04389Z Brassica rapa HOM05D003029 ORTHO05D003413 1.8e-18 99.0 177 41.2
MD04G1017000 Malus domestica HOM05D003029 ORTHO05D003413 1.8e-18 99.0 209 35.4
MD13G1282000 Malus domestica HOM05D003029 ORTHO05D003413 1.8e-18 99.0 204 34.3
Sabra17G0052200 Salix brachista HOM05D003029 ORTHO05D003413 1.8e-18 99.0 207 33.8
Sp2g18960 Schrenkiella parvula HOM05D003029 ORTHO05D003413 1.8e-18 99.0 211 34.6
TWI36G0576 Tripterygium wilfordii HOM05D003029 ORTHO05D003413 1.8e-18 99.0 263 32.3
AL625U10010 Arabidopsis lyrata HOM05D003029 ORTHO05D003413 2.3e-18 98.6 210 33.3
TPR.G11807 Trifolium pratense HOM05D003029 ORTHO05D003413 2.3e-18 98.6 226 36.3
BolC1t05561H Brassica oleracea HOM05D003029 ORTHO05D003413 3.0e-18 98.2 192 40.1
BraA03t12696Z Brassica rapa HOM05D003029 ORTHO05D003413 3.0e-18 98.2 179 41.3
Sed0025519 Sechium edule HOM05D003029 ORTHO05D003413 3.9e-18 97.8 213 35.7
Phvul.003G050800 Phaseolus vulgaris HOM05D003029 ORTHO05D003413 5.1e-18 97.4 193 36.8
A03p35170 Brassica napus HOM05D003029 ORTHO05D003413 6.7e-18 97.1 179 40.8
Potri.017G058500 Populus trichocarpa HOM05D003029 ORTHO05D003413 6.7e-18 97.1 202 35.6
Sabra16G0202400 Salix brachista HOM05D003029 ORTHO05D003413 6.7e-18 97.1 205 34.1
Actinidia21254 Actinidia chinensis HOM05D003029 ORTHO05D003413 8.7e-18 96.7 209 35.4
GSVIVG01004954001 Vitis vinifera HOM05D003029 ORTHO05D003413 8.7e-18 96.7 184 40.8
Sabra16G0202200 Salix brachista HOM05D003029 ORTHO05D003413 1.5e-17 95.9 204 34.8
CsaV3_2G011760 Cucumis sativus L. HOM05D003029 ORTHO05D003413 1.9e-17 95.5 216 36.1
MBI07_g42750_MAGBIO Magnolia biondii HOM05D003029 ORTHO05D003413 1.9e-17 95.5 212 34.0
Phvul.003G050700 Phaseolus vulgaris HOM05D003029 ORTHO05D003413 1.9e-17 95.5 194 37.6
QL06p026140 Quercus lobata HOM05D003029 ORTHO05D003413 2.5e-17 95.1 255 32.5
Dinv14526 Davidia involucrata HOM05D003029 ORTHO05D003413 3.3e-17 94.7 231 34.6
Sp3g06210 Schrenkiella parvula HOM05D003029 ORTHO05D003413 3.3e-17 94.7 192 37.0
BcaB04g21298 Brassica carinata HOM05D003029 ORTHO05D003413 4.3e-17 94.4 193 37.8
Nitab4.5_0006920g0010 Nicotiana tabacum HOM05D003029 ORTHO05D003413 4.3e-17 94.4 183 37.7
AL3G18580 Arabidopsis lyrata HOM05D003029 ORTHO05D003413 5.6e-17 94.0 190 37.4
MBI07_g27661_MAGBIO Magnolia biondii HOM05D003029 ORTHO05D003413 7.4e-17 93.6 213 34.3
Potri.017G058600 Populus trichocarpa HOM05D003029 ORTHO05D003413 7.4e-17 93.6 235 31.9
MELO3C020427.2 Cucumis melo HOM05D003029 ORTHO05D003413 9.6e-17 93.2 216 34.7
Nitab4.5_0000850g0180 Nicotiana tabacum HOM05D003029 ORTHO05D003413 9.6e-17 93.2 224 33.5
Migut.G00757 Erythranthe guttata HOM05D003029 ORTHO05D003413 1.3e-16 92.8 222 32.9
Thhalv10004154m.g Eutrema salsugineum HOM05D003029 ORTHO05D003413 1.3e-16 92.8 195 34.9
Sed0005118 Sechium edule HOM05D003029 ORTHO05D003413 1.3e-16 92.8 215 35.3
Manes.03G144600 Manihot esculenta HOM05D003029 ORTHO05D003413 2.1e-16 92.0 186 34.9
Ca_17981_v3 Cicer arietinum L. HOM05D003029 ORTHO05D003413 2.8e-16 91.7 196 36.7
Nitab4.5_0002260g0050 Nicotiana tabacum HOM05D003029 ORTHO05D003413 2.8e-16 91.7 181 37.0
Eucgr.H00027 Eucalyptus grandis HOM05D003029 ORTHO05D003413 3.7e-16 91.3 197 32.0
arahy.Tifrunner.gnm1.ann1.R3AU9F Arachis hypogaea HOM05D003029 ORTHO05D003413 4.8e-16 90.9 224 35.7
BraA06t26818Z Brassica rapa HOM05D003029 ORTHO05D003413 4.8e-16 90.9 164 37.8
DCAR_026643 Daucus carota HOM05D003029 ORTHO05D003413 4.8e-16 90.9 196 37.2
PGR083G2864 Punica granatum HOM05D003029 ORTHO05D003413 6.2e-16 90.5 206 35.0
arahy.Tifrunner.gnm1.ann1.AU34HA Arachis hypogaea HOM05D003029 ORTHO05D003413 1.8e-15 89.0 224 35.3
A05p40910 Brassica napus HOM05D003029 ORTHO05D003413 1.8e-15 89.0 186 36.0
C05p60010 Brassica napus HOM05D003029 ORTHO05D003413 1.8e-15 89.0 209 32.5
BraA05t22820Z Brassica rapa HOM05D003029 ORTHO05D003413 1.8e-15 89.0 186 36.0
CSS0036198 Camellia sinensis var. sinensis HOM05D003029 ORTHO05D003413 3.1e-15 88.2 117 47.0
AUR62020859 Chenopodium quinoa HOM05D003029 ORTHO05D003413 6.9e-15 87.0 196 34.7
Lalb_Chr13g0294851 Lupinus albus HOM05D003029 ORTHO05D003413 9.0e-15 86.7 209 32.5
Lalb_Chr12g0205611 Lupinus albus HOM05D003029 ORTHO05D003413 1.5e-14 85.9 214 32.7
HPP92_006969 Vanilla planifolia HOM05D003029 ORTHO05D003413 1.5e-14 85.9 209 32.1
Actinidia23384 Actinidia chinensis HOM05D003029 ORTHO05D003413 2.6e-14 85.1 241 31.5
Cpa.g.sc157.52 Carica papaya HOM05D003029 ORTHO05D003413 2.6e-14 85.1 87 43.7
Cc03_g08440 Coffea canephora HOM05D003029 ORTHO05D003413 3.4e-14 84.7 194 36.1
VMungo0251G3135 Vigna mungo HOM05D003029 ORTHO05D003413 3.4e-14 84.7 194 34.0
Lalb_Chr07g0186821 Lupinus albus HOM05D003029 ORTHO05D003413 4.5e-14 84.3 209 33.0
CARHR292000 Cardamine hirsuta HOM05D003029 ORTHO05D003413 5.8e-14 84.0 166 37.3
AUR62018560 Chenopodium quinoa HOM05D003029 ORTHO05D003413 1.7e-13 82.4 196 33.7
Rhsim13G0050000 Rhododendron simsii HOM05D003029 ORTHO05D003413 1.7e-13 82.4 237 32.9
vmacro02792 Vaccinium macrocarpon HOM05D003029 ORTHO05D003413 2.9e-13 81.6 95 45.3
Lj2C1122G5 Lonicera japonica HOM05D003029 ORTHO05D003413 3.8e-13 81.3 125 41.6
Psat7g075040 Pisum sativum HOM05D003029 ORTHO05D003413 3.8e-13 81.3 144 36.8
MSTRG.4243 Avicennia marina HOM05D003029 ORTHO05D003413 4.9e-13 80.9 205 30.7
CAN.G767.12 Capsicum annuum HOM05D003029 ORTHO05D003413 6.5e-13 80.5 264 29.2
Sc13g0000380 Simmondsia chinensis HOM05D003029 ORTHO05D003413 1.1e-12 79.7 179 33.5
Cc01_g16520 Coffea canephora HOM05D003029 ORTHO05D003413 1.4e-12 79.3 80 48.8
Haze_03354 Corylus avellana HOM05D003029 ORTHO05D003413 1.4e-12 79.3 220 32.7
Carub.0003s0681 Capsella rubella HOM05D003029 ORTHO05D003413 2.5e-12 78.6 186 34.4
Ciclev10005071m.g Citrus clementina HOM05D003029 ORTHO05D003413 2.5e-12 78.6 137 38.7
AT5G43490 Arabidopsis thaliana HOM05D003029 ORTHO05D003413 5.5e-12 77.4 183 31.7
Rhsim02G0061600 Rhododendron simsii HOM05D003029 ORTHO05D003413 5.5e-12 77.4 229 30.1
SalBow3G0925 Salvia bowleyana HOM05D003029 ORTHO05D003413 7.1e-12 77.0 212 30.2
Ah.13g077980 Amaranthus hybridus HOM05D003029 ORTHO05D003413 9.3e-12 76.6 112 41.1
THA.LOC104822483 Tarenaya hassleriana HOM05D003029 ORTHO05D003413 9.3e-12 76.6 118 40.7
SGA_v2.0_scaffold270G46323 Striga asiatica HOM05D003029 ORTHO05D003413 1.6e-11 75.9 201 30.3
SalBow6G0319 Salvia bowleyana HOM05D003029 ORTHO05D003413 2.1e-11 75.5 118 33.9
SalBow6G1280 Salvia bowleyana HOM05D003029 ORTHO05D003413 2.1e-11 75.5 118 33.9
Sopen12g033250 Solanum pennellii HOM05D003029 ORTHO05D003413 2.1e-11 75.5 83 49.4
DCAR_012677 Daucus carota HOM05D003029 ORTHO05D003413 3.5e-11 74.7 216 27.8
Hund19006 Selenicereus undatus HOM05D003029 ORTHO05D003413 4.6e-11 74.3 115 39.1
Hma1.2p1_0349F.1_g132190 Hydrangea macrophylla HOM05D003029 ORTHO05D003413 6.0e-11 73.9 205 31.2
Solyc12g098463.1 Solanum lycopersicum HOM05D003029 ORTHO05D003413 7.9e-11 73.6 83 48.2
EL10Ac3g07458 Beta vulgaris HOM05D003029 ORTHO05D003413 1.0e-10 73.2 110 38.2
Nitab4.5_0006920g0030 Nicotiana tabacum HOM05D003029 ORTHO05D003413 1.3e-10 72.8 117 37.6
Actinidia11454 Actinidia chinensis HOM05D003029 ORTHO05D003413 1.8e-10 72.4 281 25.3
CiPaw.14G040000 Carya illinoinensis HOM05D003029 ORTHO05D003413 2.3e-10 72.0 242 33.1
unitig_8.g3407 Utricularia gibba HOM05D003029 ORTHO05D003413 3.9e-10 71.2 127 35.4
Ah.04g149350 Amaranthus hybridus HOM05D003029 ORTHO05D003413 6.7e-10 70.5 215 29.8
Lsat_1_v5_gn_1_70641 Lactuca sativa HOM05D003029 ORTHO05D003413 6.7e-10 70.5 80 46.2
SHI28770 Sapria himalayana HOM05D003029 ORTHO05D003413 6.7e-10 70.5 167 31.7
Sopen05g032240 Solanum pennellii HOM05D003029 ORTHO05D003413 6.7e-10 70.5 78 48.7
ClCG05G003130 Citrullus lanatus HOM05D003029 ORTHO05D003413 1.1e-09 69.7 92 39.1
HanXRQChr01g0022171 Helianthus annuus HOM05D003029 ORTHO05D003413 1.1e-09 69.7 82 47.6
Sc05g0001900 Simmondsia chinensis HOM05D003029 ORTHO05D003413 1.1e-09 69.7 184 32.6
Solyc05g053770.4 Solanum lycopersicum HOM05D003029 ORTHO05D003413 1.5e-09 69.3 78 47.4
CDE05G0723 Ceratophyllum demersum HOM05D003029 ORTHO05D003413 1.9e-09 68.9 174 32.2
PGSC0003DMG400015747 Solanum tuberosum HOM05D003029 ORTHO05D003413 1.9e-09 68.9 78 47.4
Os03g0847800 Oryza sativa ssp. japonica HOM05D003029 ORTHO05D003413 3.3e-09 68.2 43 81.4
Zm00001eb036180 Zea mays HOM05D003029 ORTHO05D003413 3.3e-09 68.2 130 33.1
CAN.G765.36 Capsicum annuum HOM05D003029 ORTHO05D003413 4.3e-09 67.8 81 46.9
DCAR_004743 Daucus carota HOM05D003029 ORTHO05D003413 4.3e-09 67.8 145 35.2
Oeu043441.1 Olea europaea HOM05D003029 ORTHO05D003413 9.7e-09 66.6 221 27.6
ATR0561G140 Amborella trichopoda HOM05D003029 ORTHO05D003413 1.6e-08 65.9 275 26.9
CsaV3_3G010750 Cucumis sativus L. HOM05D003029 ORTHO05D003413 2.2e-08 65.5 81 39.5
MELO3C006294.2 Cucumis melo HOM05D003029 ORTHO05D003413 2.8e-08 65.1 81 39.5
ECA248G1735 Erigeron canadensis HOM05D003029 ORTHO05D003413 3.7e-08 64.7 82 41.5
Oeu057857.3 Olea europaea HOM05D003029 ORTHO05D003413 3.7e-08 64.7 86 36.0
MSTRG.9800 Avicennia marina HOM05D003029 ORTHO05D003413 8.2e-08 63.5 204 26.5
Migut.D02515 Erythranthe guttata HOM05D003029 ORTHO05D003413 1.8e-07 62.4 80 41.2
CANSAT78G1052 Cannabis sativa HOM05D003029 ORTHO05D003413 2.4e-07 62.0 73 41.1
HanXRQChr11g0344321 Helianthus annuus HOM05D003029 ORTHO05D003413 3.1e-07 61.6 242 28.1
Gohir.A09G206200 Gossypium hirsutum HOM05D003029 ORTHO05D003413 4.1e-07 61.2 167 32.3
Psat5g100760 Pisum sativum HOM05D003029 ORTHO05D003413 6.9e-07 60.5 218 28.4
AL43U10010 Arabidopsis lyrata HOM05D000011 ORTHO05D000018 1.2e-06 59.7 182 29.1
SGA_v2.0_scaffold156G37278 Striga asiatica HOM05D003029 ORTHO05D003413 2.6e-06 58.5 143 29.4


User provided reference genes

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