Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb064330 Zea mays HOM05D002002 ORTHO05D003658 1.3e-139 500.0 301 100.0
Zm00001eb210880 Zea mays HOM05D002002 ORTHO05D003658 1.4e-72 277.3 310 66.1
Os03g0844850 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D003658 5.8e-47 192.2 312 48.1
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 1.0e-19 101.7 162 38.3
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 8.7e-19 98.6 135 38.5
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 4.5e-15 86.3 124 37.1
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 4.9e-14 82.8 144 31.9
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 6.4e-14 82.4 150 35.3
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 1.9e-13 80.9 148 28.4
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 3.2e-13 80.1 150 31.3
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 4.2e-13 79.7 148 32.4
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 5.5e-13 79.3 138 32.6
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 2.7e-12 77.0 164 28.7
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 2.7e-12 77.0 141 29.8
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 4.6e-12 76.3 152 32.2
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 4.6e-12 76.3 142 28.9
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 4.6e-12 76.3 138 30.4
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 7.9e-12 75.5 128 35.2
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 7.9e-12 75.5 143 32.9
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.0e-11 75.1 147 32.0
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.8e-11 74.3 205 31.2
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 3.9e-11 73.2 150 30.7
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 3.9e-11 73.2 142 31.7
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 3.9e-11 73.2 148 32.4
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 6.7e-11 72.4 114 36.8
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 8.7e-11 72.0 143 30.8
Migut.K00599 Erythranthe guttata HOM05D002002 ORTHO05D003658 8.7e-11 72.0 162 29.6
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 8.7e-11 72.0 142 32.4
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 1.9e-10 70.9 129 34.9
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.9e-10 70.9 169 32.0
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.9e-10 70.9 169 32.0
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 4.3e-10 69.7 82 42.7
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 4.3e-10 69.7 161 32.3
Nitab4.5_0003609g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008711 5.6e-10 69.3 141 31.2
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 7.4e-10 68.9 161 32.3
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 1.3e-09 68.2 146 30.1
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 1.6e-09 67.8 126 31.7
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.6e-09 67.8 138 28.3
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 2.8e-09 67.0 140 31.4
Lj2g0007304 Lotus japonicus HOM05D002002 ORTHO05D003658 3.7e-09 66.6 102 34.3
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 4.8e-09 66.2 82 39.0
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 6.2e-09 65.9 118 33.1
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 6.2e-09 65.9 149 30.2
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 6.2e-09 65.9 154 30.5
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 6.2e-09 65.9 94 38.3
QL03p058095 Quercus lobata HOM05D002002 ORTHO05D003658 8.2e-09 65.5 110 38.2
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 1.1e-08 65.1 93 37.6
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 1.1e-08 65.1 85 41.2
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 1.1e-08 65.1 83 41.0
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 1.4e-08 64.7 133 27.8
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 1.8e-08 64.3 91 40.7
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.8e-08 64.3 99 38.4
Sed0021898 Sechium edule HOM05D002002 ORTHO05D003658 1.8e-08 64.3 84 38.1
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 3.1e-08 63.5 76 38.2
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 3.1e-08 63.5 79 41.8
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 4.0e-08 63.2 96 40.6
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 4.0e-08 63.2 80 41.2
Psat2g100360 Pisum sativum HOM05D002002 ORTHO05D003658 4.0e-08 63.2 85 37.6
Sopen05g008380 Solanum pennellii HOM05D002002 ORTHO05D003658 4.0e-08 63.2 138 27.5
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 4.0e-08 63.2 78 39.7
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 5.3e-08 62.8 86 39.5
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 5.3e-08 62.8 99 37.4
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 5.3e-08 62.8 79 41.8
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 5.3e-08 62.8 77 42.9
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 6.9e-08 62.4 95 36.8
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 9.0e-08 62.0 76 36.8
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 1.2e-07 61.6 79 41.8
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 1.2e-07 61.6 91 37.4
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 2.0e-07 60.8 89 39.3
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 2.0e-07 60.8 93 35.5
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 2.6e-07 60.5 79 40.5
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 2.6e-07 60.5 77 41.6
Lj4g0014379 Lotus japonicus HOM05D002002 ORTHO05D003658 2.6e-07 60.5 83 38.6
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 2.6e-07 60.5 75 44.0
Nitab4.5_0000007g0050 Nicotiana tabacum HOM05D002002 ORTHO05D008711 2.6e-07 60.5 140 27.9
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 2.6e-07 60.5 138 26.8
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 3.4e-07 60.1 77 40.3
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 3.4e-07 60.1 79 38.0
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 4.5e-07 59.7 81 35.8
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 5.8e-07 59.3 90 35.6
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 5.8e-07 59.3 90 35.6
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 5.8e-07 59.3 90 35.6
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 5.8e-07 59.3 144 28.5
Actinidia09481 Actinidia chinensis HOM05D007028 ORTHO05D003658 1.0e-06 58.5 73 42.5
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 1.0e-06 58.5 81 37.0
Phvul.003G065000 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 1.0e-06 58.5 100 36.0
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 1.0e-06 58.5 87 33.3
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 1.0e-06 58.5 87 33.3
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 1.3e-06 58.2 84 34.5
Glyma.01G025900 Glycine max HOM05D002002 ORTHO05D003658 1.3e-06 58.2 79 41.8
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 1.3e-06 58.2 136 27.9
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 1.3e-06 58.2 75 41.3
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 1.3e-06 58.2 150 28.7
VMungo0251G0889 Vigna mungo HOM05D002002 ORTHO05D003658 1.3e-06 58.2 100 34.0
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 1.7e-06 57.8 75 41.3
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 2.9e-06 57.0 75 42.7
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 2.9e-06 57.0 75 41.3
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 3.8e-06 56.6 119 35.3
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 4.9e-06 56.2 106 34.9
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 4.9e-06 56.2 129 34.1
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 4.9e-06 56.2 72 41.7
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 4.9e-06 56.2 75 41.3
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 4.9e-06 56.2 75 41.3
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 6.5e-06 55.8 75 41.3
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 6.5e-06 55.8 75 41.3
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 6.5e-06 55.8 81 33.3


User provided reference genes

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