Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 5.6e-209 730.7 373 100.0
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 6.6e-194 680.6 373 93.6
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 5.8e-174 614.4 370 85.7
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 4.4e-129 465.3 336 68.5
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 2.0e-126 456.4 314 70.4
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 2.7e-126 456.1 340 66.2
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.0e-125 454.1 331 67.4
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 3.8e-125 452.2 362 63.0
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 3.8e-125 452.2 362 63.0
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.1e-124 450.7 362 62.7
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 4.2e-124 448.7 358 64.0
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 3.6e-123 445.7 337 63.8
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 4.7e-123 445.3 362 63.0
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.0e-122 444.1 359 61.6
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.4e-122 443.7 350 62.3
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 1.8e-122 443.4 321 66.4
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 5.2e-122 441.8 360 61.9
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 8.9e-122 441.0 360 61.9
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 1.2e-121 440.7 349 62.8
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 1.5e-121 440.3 290 71.0
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 1.5e-121 440.3 358 60.9
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 2.0e-121 439.9 311 65.9
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 2.0e-121 439.9 355 62.0
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 2.6e-121 439.5 340 65.6
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 3.4e-121 439.1 336 65.2
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 5.7e-121 438.3 331 64.7
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 7.5e-121 438.0 327 63.0
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 9.8e-121 437.6 359 59.9
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.3e-120 437.2 354 64.1
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 1.7e-120 436.8 317 65.3
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 2.2e-120 436.4 340 62.6
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 3.7e-120 435.6 357 61.3
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 3.7e-120 435.6 360 61.1
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 4.9e-120 435.3 370 60.3
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 6.3e-120 434.9 358 61.2
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 6.3e-120 434.9 338 64.8
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 6.3e-120 434.9 343 63.6
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 1.1e-119 434.1 356 61.8
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.4e-119 433.7 326 65.0
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 1.8e-119 433.3 353 62.6
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.8e-119 433.3 356 62.1
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 2.4e-119 433.0 340 62.4
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.4e-119 433.0 326 65.0
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 3.1e-119 432.6 348 62.4
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 5.4e-119 431.8 359 60.2
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 5.4e-119 431.8 363 59.8
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 9.2e-119 431.0 355 61.4
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 1.2e-118 430.6 358 60.6
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 1.2e-118 430.6 353 60.9
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 1.2e-118 430.6 349 61.9
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.0e-118 429.9 326 65.3
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 2.7e-118 429.5 314 66.6
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 2.7e-118 429.5 366 60.9
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 3.5e-118 429.1 362 60.5
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 4.5e-118 428.7 366 60.9
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 4.5e-118 428.7 361 61.2
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 4.5e-118 428.7 350 62.0
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 4.5e-118 428.7 358 61.2
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 5.9e-118 428.3 346 61.8
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 7.8e-118 427.9 336 63.7
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 7.8e-118 427.9 346 60.7
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 7.8e-118 427.9 320 65.0
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 1.3e-117 427.2 356 61.5
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 1.7e-117 426.8 365 58.9
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 2.9e-117 426.0 357 60.8
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 3.8e-117 425.6 352 59.7
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 3.8e-117 425.6 359 59.3
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 8.6e-117 424.5 371 58.8
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 2.5e-116 422.9 349 60.2
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 4.3e-116 422.2 366 59.6
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 5.6e-116 421.8 311 65.6
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 1.6e-115 420.2 333 61.3
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 1.6e-115 420.2 359 59.6
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 2.8e-115 419.5 346 60.7
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 2.8e-115 419.5 357 60.5
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 4.7e-115 418.7 360 59.4
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 8.0e-115 417.9 316 64.2
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 8.0e-115 417.9 358 59.2
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 4.0e-114 415.6 320 62.8
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.2e-113 414.1 364 58.2
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 1.2e-113 414.1 344 61.3
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 1.2e-113 414.1 361 57.6
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 1.2e-113 414.1 316 63.0
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 1.5e-113 413.7 371 58.8
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 3.4e-113 412.5 352 59.9
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 3.4e-113 412.5 352 58.8
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 5.7e-113 411.8 340 61.2
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 5.7e-113 411.8 366 58.2
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 7.5e-113 411.4 350 59.1
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 3.7e-112 409.1 347 60.2
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 3.7e-112 409.1 347 59.7
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 3.7e-112 409.1 352 58.5
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 6.4e-112 408.3 331 62.2
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 8.3e-112 407.9 363 59.2
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 8.3e-112 407.9 366 57.9
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 2.4e-111 406.4 357 58.8
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 7.0e-111 404.8 297 64.3
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 1.2e-110 404.1 328 61.9
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 3.5e-110 402.5 363 58.4
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 3.5e-110 402.5 345 58.8
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 1.0e-109 401.0 304 64.5
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 8.6e-109 397.9 362 58.6
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.1e-108 397.5 319 60.8
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.1e-108 397.5 360 57.8
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 1.5e-108 397.1 362 58.0
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 1.5e-108 397.1 362 57.7
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.9e-108 396.7 364 57.4
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 4.3e-108 395.6 362 57.5
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 2.1e-107 393.3 363 57.6
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 3.6e-107 392.5 362 57.5
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 4.7e-107 392.1 362 56.9
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 6.2e-107 391.7 362 56.6
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 8.0e-107 391.3 362 56.9
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 8.0e-107 391.3 362 56.9
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 1.1e-106 391.0 346 58.7
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 1.1e-106 391.0 346 58.7
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 2.3e-106 389.8 361 56.5
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 3.1e-106 389.4 350 56.0
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 5.2e-106 388.7 279 66.3
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 6.8e-106 388.3 360 57.2
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 6.8e-106 388.3 360 57.2
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 6.8e-106 388.3 357 57.1
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 5.8e-105 385.2 275 68.4
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 1.3e-104 384.0 355 56.6
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 4.9e-104 382.1 336 58.3
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 8.3e-104 381.3 362 56.1
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 1.6e-102 377.1 329 57.8
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 7.8e-102 374.8 306 59.5
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 3.3e-100 369.4 322 59.3
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 3.6e-99 365.9 327 57.5
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 1.5e-97 360.5 294 60.9
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 9.9e-97 357.8 274 63.1
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 1.5e-92 344.0 361 52.6
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 2.8e-91 339.7 268 60.8
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 3.2e-87 326.2 320 51.9
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 7.8e-86 321.6 323 53.6
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 1.7e-85 320.5 278 61.5
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 1.7e-85 320.5 467 42.0
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 1.1e-82 311.2 264 58.7
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 4.9e-80 302.4 340 49.1
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 3.9e-77 292.7 371 46.4
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 8.7e-77 291.6 290 52.1
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 1.9e-76 290.4 290 51.7
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 8.1e-75 285.0 199 67.8
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 1.4e-74 284.3 225 63.6
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 4.5e-73 279.3 201 65.2
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.9e-71 273.9 216 63.4
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 1.8e-69 267.3 212 62.7
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 1.1e-66 258.1 306 45.8
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 2.0e-65 253.8 204 61.3
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 3.4e-65 253.1 220 56.8
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 1.9e-60 237.3 248 49.2
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.5e-44 183.7 159 59.1
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.1e-39 168.3 158 55.1
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 5.5e-39 166.0 127 63.0
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 3.0e-37 160.2 136 60.3
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.0e-36 157.5 130 59.2
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 9.1e-34 148.7 88 78.4
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 2.0e-33 147.5 107 68.2
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 2.9e-24 117.1 92 58.7
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 2.5e-23 114.0 282 25.9
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 7.5e-20 102.4 348 26.7


User provided reference genes

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