Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 3.4e-124 448.4 232 100.0
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 1.4e-117 426.4 228 95.6
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 3.1e-109 398.7 226 89.4
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 4.1e-93 345.1 223 75.3
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 1.1e-90 337.0 224 75.0
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 1.9e-90 336.3 228 73.2
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 2.5e-90 335.9 224 73.2
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 3.3e-90 335.5 224 73.7
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 4.3e-90 335.1 224 74.6
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 5.6e-90 334.7 224 74.6
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 5.6e-90 334.7 224 74.6
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 5.6e-90 334.7 223 74.4
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 5.6e-90 334.7 224 73.7
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 1.2e-89 333.6 224 73.7
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 2.1e-89 332.8 227 72.7
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 2.8e-89 332.4 224 73.7
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 3.6e-89 332.0 223 74.0
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 3.6e-89 332.0 227 72.7
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 4.7e-89 331.6 221 74.2
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 4.7e-89 331.6 217 76.5
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 8.0e-89 330.9 223 74.0
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 8.0e-89 330.9 224 73.7
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 8.0e-89 330.9 216 75.5
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 1.0e-88 330.5 228 71.9
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 1.0e-88 330.5 221 74.2
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 1.4e-88 330.1 224 72.8
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 1.8e-88 329.7 223 73.5
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 1.8e-88 329.7 223 74.4
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 1.8e-88 329.7 221 72.9
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 1.8e-88 329.7 226 71.7
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 3.0e-88 328.9 226 72.1
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 3.0e-88 328.9 226 72.1
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 3.0e-88 328.9 226 72.1
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 3.0e-88 328.9 222 73.9
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 3.0e-88 328.9 221 72.9
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 3.0e-88 328.9 221 73.3
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 5.2e-88 328.2 229 72.5
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 6.8e-88 327.8 226 71.7
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 6.8e-88 327.8 226 71.7
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 6.8e-88 327.8 225 72.4
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 8.9e-88 327.4 221 73.3
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 8.9e-88 327.4 223 74.0
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 1.2e-87 327.0 226 71.7
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 1.5e-87 326.6 220 74.1
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.5e-87 326.6 227 72.7
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 1.5e-87 326.6 223 72.6
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.5e-87 326.6 224 72.3
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 2.0e-87 326.2 226 71.7
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.6e-87 325.9 226 70.8
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 2.6e-87 325.9 222 72.5
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 2.6e-87 325.9 227 73.1
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 3.4e-87 325.5 224 71.9
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 3.4e-87 325.5 226 70.8
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 3.4e-87 325.5 220 74.5
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 3.4e-87 325.5 228 71.1
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 3.4e-87 325.5 221 72.4
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 4.4e-87 325.1 226 70.8
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 5.7e-87 324.7 227 72.7
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 7.5e-87 324.3 226 70.8
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 1.3e-86 323.6 226 70.8
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 1.3e-86 323.6 222 73.4
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 1.7e-86 323.2 226 71.7
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 1.7e-86 323.2 227 72.7
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 2.2e-86 322.8 221 72.4
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 2.2e-86 322.8 227 71.8
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 2.9e-86 322.4 220 73.2
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 4.9e-86 321.6 226 69.9
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 4.9e-86 321.6 223 72.2
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 8.3e-86 320.9 224 71.9
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 8.3e-86 320.9 220 72.7
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 1.4e-85 320.1 219 72.1
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 1.4e-85 320.1 222 72.5
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 2.4e-85 319.3 222 73.0
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 3.2e-85 318.9 264 63.3
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 4.1e-85 318.5 224 70.5
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 9.2e-85 317.4 226 69.9
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 1.2e-84 317.0 222 71.6
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 2.0e-84 316.2 229 68.1
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 3.5e-84 315.5 222 70.7
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 5.9e-84 314.7 222 72.1
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 1.0e-83 313.9 217 71.0
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 2.3e-83 312.8 226 70.8
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 2.3e-83 312.8 235 68.5
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 1.1e-82 310.5 217 69.6
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 4.3e-82 308.5 268 60.1
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 9.5e-82 307.4 221 67.9
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 2.8e-81 305.8 221 67.4
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 4.7e-81 305.1 223 68.2
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 6.2e-81 304.7 220 69.1
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 8.0e-81 304.3 221 67.4
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 2.3e-80 302.8 221 66.5
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 2.3e-80 302.8 221 66.5
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 3.1e-80 302.4 219 68.0
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 5.2e-80 301.6 221 66.1
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 6.8e-80 301.2 221 66.1
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 6.8e-80 301.2 209 69.9
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 1.2e-79 300.4 223 65.5
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.0e-79 299.7 274 58.4
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 3.4e-79 298.9 226 65.5
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 3.4e-79 298.9 226 65.5
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 9.8e-79 297.4 223 64.6
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 2.5e-74 282.7 214 65.0
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 5.6e-74 281.6 218 63.3
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 7.3e-74 281.2 221 63.3
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 9.5e-74 280.8 214 65.4
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 9.5e-74 280.8 192 72.9
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.6e-73 280.0 220 64.1
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 1.6e-73 280.0 224 65.6
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 2.1e-73 279.6 224 63.8
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 2.8e-73 279.3 179 77.7
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 6.2e-73 278.1 223 63.2
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 2.3e-72 276.2 225 63.6
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 5.8e-71 271.6 221 62.4
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 8.3e-70 267.7 222 62.2
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 7.3e-66 254.6 183 67.8
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 2.1e-60 236.5 207 59.4
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 5.8e-55 218.4 146 74.7
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 3.5e-52 209.1 229 48.9
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 3.9e-51 205.7 128 75.8
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.1e-49 199.9 122 77.9
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 9.0e-48 194.5 122 74.6
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 1.7e-46 190.3 134 69.4
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 2.4e-45 186.4 138 68.8
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 4.5e-39 165.6 109 74.3
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 4.9e-38 162.2 102 81.4
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 3.2e-37 159.5 152 57.2
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 3.5e-36 156.0 124 59.7
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 3.9e-35 152.5 126 62.7
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 5.3e-32 142.1 108 64.8
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.2e-31 141.0 92 69.6
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 4.9e-30 135.6 70 98.6
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.4e-29 134.0 168 45.2
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 7.1e-29 131.7 97 67.0
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 2.1e-28 130.2 195 40.0
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 7.9e-28 128.3 95 66.3
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 1.3e-27 127.5 192 39.1
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 2.3e-27 126.7 205 39.5
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 3.9e-27 125.9 95 67.4
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 2.2e-25 120.2 80 77.5
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 3.7e-25 119.4 190 38.9
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.5e-23 114.0 76 72.4
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 7.6e-23 111.7 192 35.9
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 3.8e-22 109.4 66 84.8
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 4.2e-21 105.9 205 33.7
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 4.2e-21 105.9 67 79.1
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 5.5e-21 105.5 65 80.0
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 7.2e-21 105.1 71 66.2
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 7.2e-21 105.1 64 81.2
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 2.1e-20 103.6 59 86.4
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 3.6e-20 102.8 173 36.4
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 4.6e-20 102.4 199 37.7
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 7.9e-20 101.7 65 73.8
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 3.9e-19 99.4 120 49.2
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 2.5e-18 96.7 197 34.0
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 3.3e-18 96.3 79 64.6
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 7.4e-18 95.1 220 30.9
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 1.7e-17 94.0 75 62.7
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.4e-16 90.9 60 68.3
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 6.9e-16 88.6 79 60.8
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 9.1e-16 88.2 84 61.9
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 4.5e-15 85.9 91 51.6
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 5.0e-14 82.4 90 52.2
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 1.6e-12 77.4 45 80.0
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 3.6e-12 76.3 96 47.9
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 1.1e-10 71.2 56 64.3
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 4.4e-10 69.3 55 58.2
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 1.2e-07 61.2 39 69.2
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 8.5e-06 55.1 95 40.0


User provided reference genes

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