Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb063250 Zea mays HOM05D002852 ORTHO05D003174 1.0e-117 426.8 219 100.0
Os03g0100200 Oryza sativa ssp. japonica HOM05D002852 ORTHO05D003174 2.9e-64 249.2 215 65.6
Nitab4.5_0001130g0110 Nicotiana tabacum HOM05D002852 ORTHO05D003174 3.2e-47 192.6 174 59.2
Nitab4.5_0000103g0120 Nicotiana tabacum HOM05D002852 ORTHO05D003174 4.2e-47 192.2 174 59.2
Cc05_g05260 Coffea canephora HOM05D002852 ORTHO05D003174 2.7e-46 189.5 213 52.6
CiPaw.08G043200 Carya illinoinensis HOM05D002852 ORTHO05D003174 3.6e-46 189.1 195 53.3
Dinv21883 Davidia involucrata HOM05D001058 ORTHO05D000911 3.6e-46 189.1 195 56.4
Peaxi162Scf00073g01923 Petunia axillaris HOM05D002852 ORTHO05D003174 4.6e-46 188.7 174 59.2
Atru.chr6.1968 Acer truncatum HOM05D002852 ORTHO05D003174 1.4e-45 187.2 175 57.7
PGR042G2497 Punica granatum HOM05D002852 ORTHO05D003174 2.3e-45 186.4 216 53.7
CAN.G77.17 Capsicum annuum HOM05D002852 ORTHO05D003174 3.0e-45 186.0 200 53.5
Eucgr.A02949 Eucalyptus grandis HOM05D002852 ORTHO05D003174 3.0e-45 186.0 174 56.9
Ciclev10032722m.g Citrus clementina HOM05D002852 ORTHO05D003174 6.7e-45 184.9 175 57.7
Solyc03g094175.1 Solanum lycopersicum HOM05D002852 ORTHO05D003174 6.7e-45 184.9 221 48.4
Solyc03g094177.1 Solanum lycopersicum HOM05D002852 ORTHO05D003174 6.7e-45 184.9 221 48.4
MD07G1239200 Malus domestica HOM05D002852 ORTHO05D003174 8.8e-45 184.5 174 58.0
Sopen03g025160 Solanum pennellii HOM05D002852 ORTHO05D003174 8.8e-45 184.5 221 48.4
Psat6g049600 Pisum sativum HOM05D002852 ORTHO05D003174 1.1e-44 184.1 174 55.2
Cpa.g.sc13.211 Carica papaya HOM05D002852 ORTHO05D003174 2.0e-44 183.3 174 56.9
Haze_22232 Corylus avellana HOM05D002852 ORTHO05D003174 2.6e-44 183.0 179 57.0
Manes.14G042100 Manihot esculenta HOM05D002852 ORTHO05D003174 4.4e-44 182.2 188 53.7
TPR.G20784 Trifolium pratense HOM05D002852 ORTHO05D003174 5.7e-44 181.8 174 55.2
Glyma.02G087800 Glycine max HOM05D002852 ORTHO05D003174 1.7e-43 180.3 220 48.2
Nn1g00695 Nelumbo nucifera HOM05D002852 ORTHO05D003174 1.7e-43 180.3 174 58.0
SalBow3G0580 Salvia bowleyana HOM05D002852 ORTHO05D003174 1.7e-43 180.3 211 52.6
CSS0017040 Camellia sinensis var. sinensis HOM05D002852 ORTHO05D003174 2.2e-43 179.9 174 56.3
AL8G25370 Arabidopsis lyrata HOM05D002852 ORTHO05D003174 4.8e-43 178.7 174 55.7
THA.LOC104811545 Tarenaya hassleriana HOM05D002852 ORTHO05D003174 4.8e-43 178.7 178 55.6
Thecc.03G144200 Theobroma cacao HOM05D002852 ORTHO05D003174 4.8e-43 178.7 186 55.4
TAR629G0429 Trochodendron aralioides HOM05D002852 ORTHO05D003174 4.8e-43 178.7 188 54.3
Duzib205G1356 Durio zibethinus HOM05D002852 ORTHO05D003174 6.3e-43 178.3 214 52.3
Sabra15G0132400 Salix brachista HOM05D002852 ORTHO05D003174 6.3e-43 178.3 179 54.7
Cfa013609 Carpinus fangiana HOM05D002852 ORTHO05D003174 8.2e-43 177.9 194 53.1
Medtr1g048970 Medicago truncatula HOM05D002852 ORTHO05D003174 8.2e-43 177.9 174 55.2
Potri.012G112400 Populus trichocarpa HOM05D002852 ORTHO05D003174 1.1e-42 177.6 217 50.2
Carub.0008s1115 Capsella rubella HOM05D002852 ORTHO05D003174 1.4e-42 177.2 174 55.7
HPP92_020689 Vanilla planifolia HOM05D002852 ORTHO05D003174 1.4e-42 177.2 206 52.4
arahy.Tifrunner.gnm1.ann1.9L0MNF Arachis hypogaea HOM05D002852 ORTHO05D003174 1.8e-42 176.8 174 54.6
Lj8A50T64 Lonicera japonica HOM05D002852 ORTHO05D003174 1.8e-42 176.8 174 55.2
FAN01G3135 Fragaria x ananassa HOM05D002852 ORTHO05D003174 2.4e-42 176.4 197 53.3
Sabra12G0081800 Salix brachista HOM05D002852 ORTHO05D003174 2.4e-42 176.4 172 56.4
CANSAT56G0606 Cannabis sativa HOM05D002852 ORTHO05D003174 3.1e-42 176.0 178 54.5
QL09p026846 Quercus lobata HOM05D002852 ORTHO05D003174 3.1e-42 176.0 187 52.9
VMungo0720G2236 Vigna mungo HOM05D002852 ORTHO05D003174 3.1e-42 176.0 204 50.5
arahy.Tifrunner.gnm1.ann1.R68HYG Arachis hypogaea HOM05D002852 ORTHO05D003174 4.1e-42 175.6 174 54.0
Glyma.10G117200 Glycine max HOM05D002852 ORTHO05D003174 5.3e-42 175.3 174 53.4
PSO732G0560 Papaver somniferum HOM05D002852 ORTHO05D003174 5.3e-42 175.3 180 53.9
TWI39G1091 Tripterygium wilfordii HOM05D002852 ORTHO05D003174 5.3e-42 175.3 178 55.6
BcaC01g06101 Brassica carinata HOM05D002852 ORTHO05D003174 6.9e-42 174.9 174 55.2
Potri.015G110500 Populus trichocarpa HOM05D002852 ORTHO05D003174 9.1e-42 174.5 176 54.5
CARHR256960 Cardamine hirsuta HOM05D002852 ORTHO05D003174 1.2e-41 174.1 174 54.0
Lalb_Chr01g0010491 Lupinus albus HOM05D002852 ORTHO05D003174 1.2e-41 174.1 174 54.6
FvH4_7g26390 Fragaria vesca HOM05D002852 ORTHO05D003174 1.5e-41 173.7 197 52.8
FAN06G0464 Fragaria x ananassa HOM05D002852 ORTHO05D003174 1.5e-41 173.7 198 52.0
HanXRQChr14g0461031 Helianthus annuus HOM05D002852 ORTHO05D003174 1.5e-41 173.7 191 51.3
Phvul.007G240500 Phaseolus vulgaris HOM05D002852 ORTHO05D003174 1.5e-41 173.7 174 54.0
A03p16320 Brassica napus HOM05D002852 ORTHO05D003174 2.0e-41 173.3 174 54.6
BraA03t10923Z Brassica rapa HOM05D002852 ORTHO05D003174 2.0e-41 173.3 174 54.6
FAN03G3189 Fragaria x ananassa HOM05D002852 ORTHO05D003174 2.0e-41 173.3 175 54.9
Gohir.D07G049500 Gossypium hirsutum HOM05D002852 ORTHO05D003174 2.0e-41 173.3 188 54.8
Gorai.001G052600 Gossypium raimondii HOM05D002852 ORTHO05D003174 2.0e-41 173.3 188 54.8
Gohir.A07G045100 Gossypium hirsutum HOM05D002852 ORTHO05D003174 2.6e-41 172.9 188 54.8
PSO675G6527 Papaver somniferum HOM05D002852 ORTHO05D003174 2.6e-41 172.9 180 53.3
Thhalv10014640m.g Eutrema salsugineum HOM05D002852 ORTHO05D003174 3.4e-41 172.6 205 48.8
RcHm_v2.0_Chr1g0372941 Rosa chinensis HOM05D002852 ORTHO05D003174 3.4e-41 172.6 174 54.6
Sp6g13300 Schrenkiella parvula HOM05D002852 ORTHO05D003174 3.4e-41 172.6 205 47.8
MSTRG.27242 Avicennia marina HOM05D002852 ORTHO05D003174 5.9e-41 171.8 221 50.2
Oeu024266.1 Olea europaea HOM05D002852 ORTHO05D003174 1.0e-40 171.0 174 54.6
AT5G51110 Arabidopsis thaliana HOM05D002852 ORTHO05D003174 1.7e-40 170.2 174 54.0
CsaV3_5G004930 Cucumis sativus L. HOM05D002852 ORTHO05D003174 2.9e-40 169.5 174 55.2
ClCG01G004740 Citrullus lanatus HOM05D002852 ORTHO05D003174 3.8e-40 169.1 198 50.5
Lsat_1_v5_gn_5_45400 Lactuca sativa HOM05D002852 ORTHO05D003174 6.5e-40 168.3 192 51.6
Sed0002451 Sechium edule HOM05D002852 ORTHO05D003174 6.5e-40 168.3 187 52.9
EL10Ac4g07721 Beta vulgaris HOM05D002852 ORTHO05D003174 8.5e-40 167.9 178 52.2
Lj6g0005255 Lotus japonicus HOM05D002852 ORTHO05D003174 8.5e-40 167.9 220 47.7
BcaC01g06073 Brassica carinata HOM05D002852 ORTHO05D003174 1.9e-39 166.8 174 52.9
BolC3t14308H Brassica oleracea HOM05D002852 ORTHO05D003174 1.9e-39 166.8 174 52.9
Aa31LG3G7610 Aethionema arabicum HOM05D002852 ORTHO05D003174 3.2e-39 166.0 174 52.3
DCAR_018067 Daucus carota HOM05D002852 ORTHO05D003174 4.2e-39 165.6 167 55.7
unitig_37.g11918 Utricularia gibba HOM05D002852 ORTHO05D003174 7.2e-39 164.9 177 53.7
Aqoxy7G00868 Aquilegia oxysepala HOM05D002852 ORTHO05D003174 1.0e-37 161.0 220 45.9
Ah.06g182420 Amaranthus hybridus HOM05D002852 ORTHO05D003174 1.4e-37 160.6 174 49.4
MELO3C005462.2 Cucumis melo HOM05D002852 ORTHO05D003174 3.0e-37 159.5 205 47.3
COL.COLO4_37295 Corchorus olitorius HOM05D002852 ORTHO05D003174 6.7e-37 158.3 224 46.9
SGA_v2.0_scaffold60G20857 Striga asiatica HOM05D002852 ORTHO05D003174 6.7e-37 158.3 249 43.4
Sc09g0006130 Simmondsia chinensis HOM05D002852 ORTHO05D003174 8.8e-37 157.9 209 45.0
ATR0829G006 Amborella trichopoda HOM05D002852 ORTHO05D003174 3.7e-35 152.5 186 49.5
SEGI_30151 Sequoiadendron giganteum HOM05D002852 ORTHO05D003174 9.1e-34 147.9 180 48.3
Atru.chr6.138 Acer truncatum HOM05D002348 ORTHO05D002512 1.0e-32 144.4 169 49.7
PGSC0003DMG400005246 Solanum tuberosum HOM05D002852 ORTHO05D003174 3.8e-32 142.5 187 46.5
Pp3c16_21440 Physcomitrium patens HOM05D002852 ORTHO05D003174 7.2e-31 138.3 201 43.8
Prupe.2G268000 Prunus persica HOM05D002852 ORTHO05D003174 9.4e-31 137.9 177 48.6
AagrBONN_evm.TU.Sc2ySwM_228.3628 Anthoceros agrestis HOM05D002852 ORTHO05D003174 3.6e-30 136.0 221 44.8
FAN10G4234 Fragaria x ananassa HOM05D002852 ORTHO05D003174 3.6e-30 136.0 163 52.1
C03p19210 Brassica napus HOM05D002852 ORTHO05D003174 1.0e-29 134.4 140 52.9
Mapoly0069s0079 Marchantia polymorpha HOM05D002852 ORTHO05D003174 1.4e-29 134.0 230 43.9
ECA238G2083 Erigeron canadensis HOM05D002852 ORTHO05D003174 3.5e-25 119.4 125 52.0
SMO134G0080 Selaginella moellendorffii HOM05D002852 ORTHO05D003174 3.8e-24 115.9 175 41.7
Actinidia31650 Actinidia chinensis HOM05D002852 ORTHO05D003174 5.0e-24 115.5 100 60.0
GSVIVG01013845001 Vitis vinifera HOM05D002852 ORTHO05D003174 5.5e-23 112.1 113 54.0
vmacro06861 Vaccinium macrocarpon HOM05D002852 ORTHO05D003174 5.2e-21 105.5 112 53.6
PGR102G2462 Punica granatum HOM05D002852 ORTHO05D003174 2.0e-20 103.6 128 50.0
Ca_21524_v3 Cicer arietinum L. HOM05D001918 ORTHO05D001931 3.7e-19 99.4 113 50.4
Cre01.g049000 Chlamydomonas reinhardtii HOM05D002852 ORTHO05D003174 1.0e-16 91.3 189 36.0
CDE11G0485 Ceratophyllum demersum HOM05D002852 ORTHO05D003174 5.0e-16 89.0 100 48.0
Migut.F00549 Erythranthe guttata HOM05D002852 ORTHO05D003174 1.7e-11 73.9 68 57.4
THA.LOC104812660 Tarenaya hassleriana HOM05D002852 ORTHO05D003174 1.9e-07 60.5 119 34.5
TWI09G0466 Tripterygium wilfordii HOM05D002852 ORTHO05D003174 1.9e-07 60.5 115 36.5
BcaC04g20730 Brassica carinata HOM05D002852 ORTHO05D003174 2.5e-07 60.1 102 40.2
C09p39780 Brassica napus HOM05D002852 ORTHO05D003174 2.5e-07 60.1 102 40.2
BolC9t56880H Brassica oleracea HOM05D002852 ORTHO05D003174 2.5e-07 60.1 102 40.2
Glyma.13G234000 Glycine max HOM05D002852 ORTHO05D003174 2.5e-07 60.1 115 35.7
Manes.15G117900 Manihot esculenta HOM05D002852 ORTHO05D003174 3.3e-07 59.7 133 34.6
Glyma.08G123200 Glycine max HOM05D002852 ORTHO05D003174 4.3e-07 59.3 115 35.7
MCO05G367 Micromonas commoda HOM05D002852 ORTHO05D003174 5.6e-07 58.9 216 29.6
Thhalv10008867m.g Eutrema salsugineum HOM05D002852 ORTHO05D003174 7.3e-07 58.5 117 34.2
Potri.011G078900 Populus trichocarpa HOM05D002852 ORTHO05D003174 1.6e-06 57.4 117 34.2
Cc09_g09640 Coffea canephora HOM05D002852 ORTHO05D003174 2.1e-06 57.0 115 33.0
Glyma.15G079000 Glycine max HOM05D002852 ORTHO05D003174 2.1e-06 57.0 115 35.7
CANSAT35G1426 Cannabis sativa HOM05D002852 ORTHO05D003174 2.8e-06 56.6 115 33.9
MD16G1203200 Malus domestica HOM05D002852 ORTHO05D003174 2.8e-06 56.6 115 33.9
Zm00001eb157590 Zea mays HOM05D002852 ORTHO05D003174 2.8e-06 56.6 117 35.9
Lj3g0020242 Lotus japonicus HOM05D002852 ORTHO05D003174 4.7e-06 55.8 115 35.7
Duzib235G1049 Durio zibethinus HOM05D002852 ORTHO05D003174 6.1e-06 55.5 116 33.6
Lalb_Chr18g0057671 Lupinus albus HOM05D002852 ORTHO05D003174 6.1e-06 55.5 112 34.8
Sp1g25710 Schrenkiella parvula HOM05D002852 ORTHO05D003174 6.1e-06 55.5 116 31.9
AL1G43650 Arabidopsis lyrata HOM05D002852 ORTHO05D003174 8.0e-06 55.1 116 33.6
MELO3C007160.2 Cucumis melo HOM05D002852 ORTHO05D003174 8.0e-06 55.1 115 33.9
Thecc.06G156400 Theobroma cacao HOM05D002852 ORTHO05D003174 8.0e-06 55.1 115 34.8


User provided reference genes

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