Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 1.7e-34 148.7 71 100.0
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 1.2e-30 136.0 84 82.1
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 2.8e-24 114.8 76 73.7
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 1.1e-23 112.8 85 68.2
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 2.3e-23 111.7 85 69.4
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 6.8e-23 110.2 85 68.2
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 8.9e-23 109.8 85 68.2
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 1.2e-22 109.4 79 70.9
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.0e-22 108.6 73 71.2
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 2.0e-22 108.6 84 63.1
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 3.4e-22 107.8 85 65.9
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 3.4e-22 107.8 78 71.8
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 3.4e-22 107.8 78 71.8
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 3.4e-22 107.8 78 71.8
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 3.4e-22 107.8 85 67.1
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 5.8e-22 107.1 85 67.1
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 5.8e-22 107.1 75 73.3
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 7.5e-22 106.7 75 74.7
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 7.5e-22 106.7 75 74.7
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 9.8e-22 106.3 76 72.4
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 9.8e-22 106.3 57 80.7
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.3e-21 105.9 76 71.1
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.7e-21 105.5 84 67.9
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 2.2e-21 105.1 84 66.7
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 2.2e-21 105.1 77 68.8
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 2.9e-21 104.8 85 64.7
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 4.9e-21 104.0 76 69.7
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 4.9e-21 104.0 84 65.5
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 6.4e-21 103.6 85 64.7
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 8.3e-21 103.2 85 63.5
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 8.3e-21 103.2 85 63.5
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 1.1e-20 102.8 76 68.4
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 1.1e-20 102.8 76 67.1
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.1e-20 102.8 80 63.8
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 1.1e-20 102.8 80 63.8
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 1.9e-20 102.1 78 65.4
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.9e-20 102.1 75 69.3
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 1.9e-20 102.1 76 68.4
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.9e-20 102.1 76 68.4
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.9e-20 102.1 76 68.4
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.9e-20 102.1 76 68.4
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 1.9e-20 102.1 85 62.4
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.9e-20 102.1 77 63.6
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.9e-20 102.1 80 63.8
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 2.4e-20 101.7 85 63.5
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.2e-20 101.3 69 71.0
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 3.2e-20 101.3 79 64.6
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 3.2e-20 101.3 78 65.4
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 4.1e-20 100.9 77 63.6
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 5.4e-20 100.5 94 59.6
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 5.4e-20 100.5 75 68.0
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.2e-19 99.4 86 60.5
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.2e-19 99.4 86 60.5
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 1.6e-19 99.0 73 68.5
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.6e-19 99.0 86 60.5
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.6e-19 99.0 86 60.5
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 2.1e-19 98.6 81 61.7
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 2.1e-19 98.6 71 64.8
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 3.5e-19 97.8 86 59.3
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 4.6e-19 97.4 86 59.3
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 4.6e-19 97.4 77 64.9
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 6.0e-19 97.1 73 68.5
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 6.0e-19 97.1 76 64.5
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 7.8e-19 96.7 85 61.2
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 1.0e-18 96.3 77 63.6
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 1.7e-18 95.5 79 62.0
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.7e-18 95.5 49 83.7
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 3.0e-18 94.7 91 58.2
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 3.9e-18 94.4 77 63.6
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 8.6e-18 93.2 77 63.6
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 1.9e-17 92.0 70 62.9
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.9e-17 92.0 68 67.6
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 2.5e-17 91.7 85 60.0
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 3.3e-17 91.3 75 62.7
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 3.3e-17 91.3 86 60.5
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 3.3e-17 91.3 85 58.8
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 3.3e-17 91.3 85 55.3
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 5.6e-17 90.5 85 56.5
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 5.6e-17 90.5 76 61.8
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 5.6e-17 90.5 76 63.2
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 7.3e-17 90.1 76 61.8
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 7.3e-17 90.1 79 58.2
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 9.5e-17 89.7 59 67.8
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 9.5e-17 89.7 68 67.6
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 1.2e-16 89.4 76 60.5
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 1.2e-16 89.4 68 64.7
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.6e-16 89.0 84 58.3
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.6e-16 89.0 79 57.0
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 1.6e-16 89.0 79 57.0
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.6e-16 89.0 79 57.0
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 2.1e-16 88.6 66 66.7
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 2.1e-16 88.6 66 66.7
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 2.1e-16 88.6 77 61.0
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 2.1e-16 88.6 62 69.4
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 2.8e-16 88.2 67 64.2
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 6.2e-16 87.0 75 58.7
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 6.2e-16 87.0 68 63.2
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 8.1e-16 86.7 66 66.7
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 8.1e-16 86.7 68 63.2
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 8.1e-16 86.7 84 57.1
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 8.1e-16 86.7 68 63.2
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 8.1e-16 86.7 76 59.2
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 8.1e-16 86.7 79 55.7
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 1.1e-15 86.3 85 56.5
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 1.1e-15 86.3 74 60.8
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.4e-15 85.9 84 56.0
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 1.8e-15 85.5 68 64.7
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 1.8e-15 85.5 84 57.1
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 2.3e-15 85.1 85 52.9
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 4.0e-15 84.3 76 59.2
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 4.0e-15 84.3 76 59.2
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 4.0e-15 84.3 76 59.2
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 5.2e-15 84.0 70 57.1
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 6.8e-15 83.6 84 56.0
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.2e-14 82.8 68 60.3
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 1.2e-14 82.8 76 59.2
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 1.2e-14 82.8 71 57.7
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 2.0e-14 82.0 63 66.7
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 2.6e-14 81.6 66 57.6
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 3.4e-14 81.3 74 56.8
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 4.4e-14 80.9 85 54.1
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 7.5e-14 80.1 76 57.9
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 7.5e-14 80.1 86 52.3
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 7.5e-14 80.1 62 62.9
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 7.5e-14 80.1 74 55.4
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 1.3e-13 79.3 69 56.5
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 1.3e-13 79.3 72 51.4
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 1.7e-13 79.0 86 51.2
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 1.7e-13 79.0 69 58.0
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 2.9e-13 78.2 105 43.8
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 8.3e-13 76.6 86 50.0
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 1.4e-12 75.9 68 58.8
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 1.9e-12 75.5 85 50.6
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 2.4e-12 75.1 86 51.2
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 3.2e-12 74.7 42 76.2
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 3.2e-12 74.7 40 82.5
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 3.2e-12 74.7 40 82.5
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 4.1e-12 74.3 77 50.6
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 4.1e-12 74.3 65 56.9
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 5.4e-12 73.9 55 65.5
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.2e-11 72.8 35 85.7
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 2.1e-11 72.0 40 80.0
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 4.6e-11 70.9 56 62.5
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 6.0e-11 70.5 52 69.2
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 1.0e-10 69.7 67 55.2
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 2.3e-10 68.6 74 44.6
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 1.1e-09 66.2 33 84.8
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 7.3e-09 63.5 52 63.5
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 9.5e-09 63.2 101 39.6
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 1.2e-08 62.8 93 38.7
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 2.8e-08 61.6 76 47.4
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 2.4e-07 58.5 72 45.8
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 2.6e-06 55.1 68 44.1


User provided reference genes

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