Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb062630 Zea mays HOM05D004273 ORTHO05D005041 1.2e-272 942.6 475 100.0
Os03g0820900 Oryza sativa ssp. japonica HOM05D004273 ORTHO05D005041 1.9e-209 732.6 474 75.5
Zm00001eb211720 Zea mays HOM05D004273 ORTHO05D005041 1.9e-185 652.9 364 90.9
TAR633G2082 Trochodendron aralioides HOM05D004273 ORTHO05D005041 6.2e-136 488.4 476 53.6
PSO339G3737 Papaver somniferum HOM05D004273 ORTHO05D005041 1.6e-128 463.8 489 51.5
MBI05_g06541_MAGBIO Magnolia biondii HOM05D004273 ORTHO05D005041 4.7e-128 462.2 467 51.4
TAR636G0691 Trochodendron aralioides HOM05D004273 ORTHO05D005041 1.8e-127 460.3 477 49.9
PSO384G1393 Papaver somniferum HOM05D004273 ORTHO05D005041 2.0e-126 456.8 491 51.9
Dinv01561 Davidia involucrata HOM05D004273 ORTHO05D005041 3.7e-125 452.6 488 48.0
Dinv32873 Davidia involucrata HOM05D004273 ORTHO05D005041 4.9e-125 452.2 469 50.5
COL.COLO4_18478 Corchorus olitorius HOM05D004273 ORTHO05D005041 5.4e-124 448.7 463 49.0
Lj1A156G61 Lonicera japonica HOM05D004273 ORTHO05D005041 1.2e-123 447.6 488 48.6
Aqoxy4G02965 Aquilegia oxysepala HOM05D004273 ORTHO05D005041 4.6e-123 445.7 471 50.7
Manes.04G033100 Manihot esculenta HOM05D004273 ORTHO05D005041 1.0e-122 444.5 428 50.9
Cfa011474 Carpinus fangiana HOM05D004273 ORTHO05D005041 2.3e-122 443.4 480 47.5
Hma1.2p1_0624F.1_g191440 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 3.0e-122 443.0 480 48.3
Cpa.g.sc190.7 Carica papaya HOM05D004273 ORTHO05D005041 1.1e-121 441.0 459 49.2
Potri.001G237400 Populus trichocarpa HOM05D004273 ORTHO05D005041 2.1e-120 436.8 458 50.0
Potri.009G028700 Populus trichocarpa HOM05D004273 ORTHO05D005041 1.1e-119 434.5 473 47.8
CiPaw.13G097100 Carya illinoinensis HOM05D004273 ORTHO05D005041 2.4e-119 433.3 472 48.1
Gorai.003G134500 Gossypium raimondii HOM05D004273 ORTHO05D005041 4.0e-119 432.6 467 48.2
Sabra09G0019900 Salix brachista HOM05D004273 ORTHO05D005041 4.0e-119 432.6 460 49.3
Sabra16G0143100 Salix brachista HOM05D004273 ORTHO05D005041 4.0e-119 432.6 470 48.7
Sed0008303 Sechium edule HOM05D004273 ORTHO05D005041 5.2e-119 432.2 460 47.0
TWI79G1222 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 2.0e-118 430.3 467 46.9
Prupe.6G080900 Prunus persica HOM05D004273 ORTHO05D005041 3.4e-118 429.5 468 48.3
PGR102G1220 Punica granatum HOM05D004273 ORTHO05D005041 3.4e-118 429.5 459 47.7
AL5G25280 Arabidopsis lyrata HOM05D004273 ORTHO05D005041 4.4e-118 429.1 466 45.5
EL10Ac7g15984 Beta vulgaris HOM05D004273 ORTHO05D005041 4.4e-118 429.1 456 49.1
CAN.G394.46 Capsicum annuum HOM05D004273 ORTHO05D005041 4.4e-118 429.1 434 48.6
Gohir.A03G040200 Gossypium hirsutum HOM05D004273 ORTHO05D005041 5.8e-118 428.7 467 48.0
Thhalv10002507m.g Eutrema salsugineum HOM05D004273 ORTHO05D005041 9.9e-118 427.9 455 46.2
Thecc.09G325000 Theobroma cacao HOM05D004273 ORTHO05D005041 9.9e-118 427.9 475 48.6
ClCG02G020320 Citrullus lanatus HOM05D004273 ORTHO05D005041 1.7e-117 427.2 463 45.8
Sp5g15230 Schrenkiella parvula HOM05D004273 ORTHO05D005041 1.7e-117 427.2 481 44.3
THA.LOC104799449 Tarenaya hassleriana HOM05D004273 ORTHO05D005041 1.7e-117 427.2 454 46.7
QL01p032775 Quercus lobata HOM05D004273 ORTHO05D005041 2.2e-117 426.8 489 46.4
Gohir.D03G127800 Gossypium hirsutum HOM05D004273 ORTHO05D005041 2.9e-117 426.4 467 47.5
PGSC0003DMG400030404 Solanum tuberosum HOM05D004273 ORTHO05D005041 2.9e-117 426.4 436 47.9
Carub.0005s1225 Capsella rubella HOM05D004273 ORTHO05D005041 8.4e-117 424.9 467 46.0
Atru.chr3.3842_Atru.chr3.3843 Acer truncatum HOM05D004273 ORTHO05D005041 1.1e-116 424.5 476 46.8
Peaxi162Scf00679g00214 Petunia axillaris HOM05D004273 ORTHO05D005041 4.1e-116 422.5 437 49.7
BraA06t25640Z Brassica rapa HOM05D004273 ORTHO05D005041 5.4e-116 422.2 455 44.4
GSVIVG01025001001 Vitis vinifera HOM05D004273 ORTHO05D005041 5.4e-116 422.2 409 51.1
AT3G46450 Arabidopsis thaliana HOM05D004273 ORTHO05D005041 7.1e-116 421.8 468 44.4
TWI31G0117 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 7.1e-116 421.8 473 46.5
Sopen06g032400 Solanum pennellii HOM05D004273 ORTHO05D005041 9.2e-116 421.4 435 47.8
MSTRG.1791 Avicennia marina HOM05D004273 ORTHO05D005041 1.2e-115 421.0 472 45.8
Solyc06g075980.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 3.5e-115 419.5 435 47.8
A06p27020 Brassica napus HOM05D004273 ORTHO05D005041 4.6e-115 419.1 458 45.2
Dinv31442 Davidia involucrata HOM05D004273 ORTHO05D005041 6.0e-115 418.7 451 48.6
MD03G1096600 Malus domestica HOM05D004273 ORTHO05D005041 1.0e-114 417.9 455 48.4
Aa31LG4G15500 Aethionema arabicum HOM05D004273 ORTHO05D005041 1.3e-114 417.5 458 45.6
FvH4_3g35600 Fragaria vesca HOM05D004273 ORTHO05D005041 1.3e-114 417.5 432 47.5
BcaC01g02262 Brassica carinata HOM05D004273 ORTHO05D005041 1.7e-114 417.2 457 44.4
BcaB02g10723 Brassica carinata HOM05D004273 ORTHO05D005041 3.0e-114 416.4 453 45.9
BolC3t19006H Brassica oleracea HOM05D004273 ORTHO05D005041 3.0e-114 416.4 457 44.4
CSS0043051 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 3.0e-114 416.4 483 46.2
FAN21G1625 Fragaria x ananassa HOM05D004273 ORTHO05D005041 3.0e-114 416.4 453 45.5
CSS0029075 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 1.1e-113 414.5 480 46.7
C03p67250 Brassica napus HOM05D004273 ORTHO05D005041 1.5e-113 414.1 457 44.2
Oeu017093.1 Olea europaea HOM05D004273 ORTHO05D005041 2.5e-113 413.3 434 48.6
ATR0559G270 Amborella trichopoda HOM05D004273 ORTHO05D005041 3.3e-113 412.9 459 47.3
SGA_v2.0_scaffold111G31385 Striga asiatica HOM05D004273 ORTHO05D005041 3.3e-113 412.9 469 46.3
MD11G1142800 Malus domestica HOM05D004273 ORTHO05D005041 9.6e-113 411.4 463 48.4
RcHm_v2.0_Chr5g0063781 Rosa chinensis HOM05D004273 ORTHO05D005041 1.2e-112 411.0 429 46.9
Hund04983 Selenicereus undatus HOM05D004273 ORTHO05D005041 1.6e-112 410.6 450 48.7
CARHR155380 Cardamine hirsuta HOM05D004273 ORTHO05D005041 2.1e-112 410.2 489 43.4
Haze_24060 Corylus avellana HOM05D004273 ORTHO05D005041 2.1e-112 410.2 508 43.9
CDE04G0924 Ceratophyllum demersum HOM05D004273 ORTHO05D005041 2.8e-112 409.8 480 46.2
Medtr4g063605 Medicago truncatula HOM05D004273 ORTHO05D005041 4.7e-112 409.1 457 45.7
Duzib170G0539 Durio zibethinus HOM05D004273 ORTHO05D005041 1.1e-111 407.9 425 49.4
Actinidia07045 Actinidia chinensis HOM05D004273 ORTHO05D005041 1.8e-111 407.1 461 47.1
HanXRQChr02g0044491 Helianthus annuus HOM05D004273 ORTHO05D005041 1.8e-111 407.1 467 46.0
CsaV3_6G017020 Cucumis sativus L. HOM05D004273 ORTHO05D005041 2.4e-111 406.8 467 45.6
Eucgr.B02383 Eucalyptus grandis HOM05D004273 ORTHO05D005041 2.4e-111 406.8 490 45.9
Hma1.2p1_0533F.1_g173530 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 6.9e-111 405.2 462 46.8
FAN11G1845 Fragaria x ananassa HOM05D004273 ORTHO05D005041 9.0e-111 404.8 440 45.9
SalBow8G5260 Salvia bowleyana HOM05D004273 ORTHO05D005041 1.2e-110 404.4 461 46.2
FAN16G0116 Fragaria x ananassa HOM05D004273 ORTHO05D005041 1.5e-110 404.1 438 46.6
Ca_19181_v3 Cicer arietinum L. HOM05D004273 ORTHO05D005041 2.0e-110 403.7 458 45.6
HPP92_019085 Vanilla planifolia HOM05D004273 ORTHO05D005041 4.4e-110 402.5 452 46.0
Migut.E01325 Erythranthe guttata HOM05D004273 ORTHO05D005041 7.6e-110 401.7 441 49.4
Lj3g0025927 Lotus japonicus HOM05D004273 ORTHO05D005041 1.3e-109 401.0 470 43.4
Lsat_1_v5_gn_8_77981 Lactuca sativa HOM05D000739 ORTHO05D005041 2.9e-109 399.8 468 45.7
Cc01_g12600 Coffea canephora HOM05D004273 ORTHO05D005041 8.4e-109 398.3 463 45.8
MELO3C013689.2 Cucumis melo HOM05D004273 ORTHO05D005041 1.1e-108 397.9 464 44.8
arahy.Tifrunner.gnm1.ann1.44D9RB Arachis hypogaea HOM05D004273 ORTHO05D005041 1.9e-108 397.1 476 44.1
TPR.G10209 Trifolium pratense HOM05D004273 ORTHO05D005041 1.9e-108 397.1 471 44.2
arahy.Tifrunner.gnm1.ann1.0ME452 Arachis hypogaea HOM05D004273 ORTHO05D005041 3.2e-108 396.4 476 44.1
Rhsim13G0085100 Rhododendron simsii HOM05D004273 ORTHO05D005041 3.2e-108 396.4 469 46.7
Glyma.11G141100 Glycine max HOM05D004273 ORTHO05D005041 7.8e-107 391.7 474 43.7
Lalb_Chr19g0137751 Lupinus albus HOM05D004273 ORTHO05D005041 7.8e-107 391.7 456 44.5
Phvul.011G065600 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 1.3e-106 391.0 463 44.1
Duzib168G0407 Durio zibethinus HOM05D004273 ORTHO05D005041 6.6e-106 388.7 478 45.4
AUR62009603 Chenopodium quinoa HOM05D004273 ORTHO05D005041 1.5e-105 387.5 455 45.5
Glyma.15G039800 Glycine max HOM05D004273 ORTHO05D005041 1.9e-105 387.1 484 43.2
Actinidia02958 Actinidia chinensis HOM05D004273 ORTHO05D005041 2.5e-105 386.7 451 47.0
arahy.Tifrunner.gnm1.ann1.T00HES Arachis hypogaea HOM05D004273 ORTHO05D005041 2.5e-105 386.7 473 44.0
CSS0019329 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 2.5e-105 386.7 455 44.4
DCAR_005310 Daucus carota HOM05D004273 ORTHO05D005041 2.5e-105 386.7 457 44.4
ECA236G0424 Erigeron canadensis HOM05D004273 ORTHO05D005041 2.5e-105 386.7 470 43.8
VMungo1127G1030 Vigna mungo HOM05D004273 ORTHO05D005041 3.3e-105 386.3 465 43.7
arahy.Tifrunner.gnm1.ann1.N7EFUM Arachis hypogaea HOM05D004273 ORTHO05D005041 4.3e-105 386.0 459 45.1
Lalb_Chr03g0026761 Lupinus albus HOM05D004273 ORTHO05D005041 5.6e-105 385.6 475 43.8
Psat7g217720 Pisum sativum HOM05D004273 ORTHO05D005041 5.6e-105 385.6 474 43.0
AUR62001817 Chenopodium quinoa HOM05D004273 ORTHO05D005041 7.3e-105 385.2 458 45.9
EL10Ac2g03411 Beta vulgaris HOM05D004273 ORTHO05D005041 1.6e-104 384.0 441 45.6
Nn2g10411 Nelumbo nucifera HOM05D004273 ORTHO05D005041 4.0e-103 379.4 371 53.6
Phvul.L004243 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 5.8e-102 375.6 467 42.0
Ciclev10028607m.g Citrus clementina HOM05D004273 ORTHO05D005041 4.9e-101 372.5 396 48.5
SEGI_06894 Sequoiadendron giganteum HOM05D004273 ORTHO05D005041 6.4e-101 372.1 474 44.1
Ah.16g107130 Amaranthus hybridus HOM05D004273 ORTHO05D005041 3.2e-100 369.8 458 42.6
Cc02_g08070 Coffea canephora HOM05D004273 ORTHO05D005041 3.2e-100 369.8 411 47.0
Sc06g0002640 Simmondsia chinensis HOM05D004273 ORTHO05D005041 3.2e-100 369.8 391 46.8
Lalb_Chr24g0394211 Lupinus albus HOM05D004273 ORTHO05D005041 1.2e-99 367.9 478 42.3
VMungo1080G0602 Vigna mungo HOM05D004273 ORTHO05D005041 1.6e-99 367.5 446 43.5
AUR62038361 Chenopodium quinoa HOM05D004273 ORTHO05D005041 1.8e-98 364.0 372 49.2
Nitab4.5_0001838g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 1.8e-98 364.0 424 44.6
Sopen05g033050 Solanum pennellii HOM05D004273 ORTHO05D005041 5.6e-97 359.0 467 41.8
Glyma.13G334700 Glycine max HOM05D004273 ORTHO05D005041 9.6e-97 358.2 473 39.7
Solyc05g054570.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 9.6e-97 358.2 468 41.9
CAN.G1013.9 Capsicum annuum HOM05D004273 ORTHO05D005041 1.3e-96 357.8 476 42.9
PGSC0003DMG400023525 Solanum tuberosum HOM05D004273 ORTHO05D005041 1.3e-96 357.8 469 42.2
Peaxi162Scf00015g00152 Petunia axillaris HOM05D004273 ORTHO05D005041 1.6e-96 357.5 474 41.4
Nitab4.5_0001304g0060 Nicotiana tabacum HOM05D004273 ORTHO05D005041 4.8e-96 355.9 299 56.2
Nitab4.5_0014877g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 2.0e-94 350.5 475 41.5
HanXRQChr14g0458231 Helianthus annuus HOM05D004273 ORTHO05D005041 2.2e-93 347.1 364 48.6
Nitab4.5_0001831g0040 Nicotiana tabacum HOM05D004273 ORTHO05D005041 2.9e-93 346.7 477 40.9
Sc06g0008260 Simmondsia chinensis HOM05D004273 ORTHO05D005041 1.4e-92 344.4 306 53.3
Lsat_1_v5_gn_2_116561 Lactuca sativa HOM05D004273 ORTHO05D005041 1.9e-92 344.0 372 47.0
HanXRQChr07g0201161 Helianthus annuus HOM05D004273 ORTHO05D005041 2.4e-92 343.6 372 47.3
unitig_747.g21363 Utricularia gibba HOM05D004273 ORTHO05D005041 1.2e-91 341.3 422 43.6
ECA238G2787 Erigeron canadensis HOM05D004273 ORTHO05D005041 6.7e-90 335.5 440 40.5
SMO266G0022 Selaginella moellendorffii HOM05D004273 ORTHO05D005041 2.5e-81 307.0 425 40.5
AUR62040968 Chenopodium quinoa HOM05D004273 ORTHO05D005041 1.8e-79 300.8 333 48.0
Lj1A935G50 Lonicera japonica HOM05D004273 ORTHO05D005041 5.7e-73 279.3 475 36.8
AagrBONN_evm.TU.Sc2ySwM_117.239 Anthoceros agrestis HOM05D004273 ORTHO05D005041 2.2e-72 277.3 349 43.6
Pp3c14_19130 Physcomitrium patens HOM05D004273 ORTHO05D005041 1.4e-71 274.6 451 37.9
Hund12542 Selenicereus undatus HOM05D004273 ORTHO05D005041 6.9e-71 272.3 302 44.7
Pp3c9_11070 Physcomitrium patens HOM05D004273 ORTHO05D005041 1.1e-68 265.0 427 37.0
Mapoly0153s0026 Marchantia polymorpha HOM05D004273 ORTHO05D005041 4.4e-65 253.1 299 44.8
Ah.08g219160 Amaranthus hybridus HOM05D004273 ORTHO05D005041 1.4e-63 248.1 256 50.4
vmacro03093 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 3.9e-58 229.9 263 51.0
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 1.0e-45 188.7 214 44.4
CBR_g4074 Chara braunii HOM05D004273 ORTHO05D005041 3.2e-44 183.7 355 31.8
Actinidia07731 Actinidia chinensis HOM05D004273 ORTHO05D005041 1.7e-40 171.4 151 56.3
Ah.08g219150 Amaranthus hybridus HOM05D004273 ORTHO05D005041 6.1e-35 152.9 191 41.4
Actinidia07724 Actinidia chinensis HOM05D004273 ORTHO05D005041 6.3e-32 142.9 162 46.3
FAN11G3764 Fragaria x ananassa HOM05D004273 ORTHO05D005041 8.6e-29 132.5 309 29.4
DCAR_027649 Daucus carota HOM05D004273 ORTHO05D005041 1.2e-27 128.6 376 28.2
Lj8C85T7 Lonicera japonica HOM05D004273 ORTHO05D005041 7.5e-25 119.4 121 48.8
unitig_748.g7756 Utricularia gibba HOM05D004273 ORTHO05D005041 1.6e-22 111.7 196 38.8
FvH4_3g35570 Fragaria vesca HOM05D004273 ORTHO05D005041 6.0e-22 109.8 293 28.0
vmacro03094 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 2.8e-19 100.9 71 62.0
Zm00001eb292580 Zea mays HOM05D004273 ORTHO05D005041 3.9e-13 80.5 41 97.6
Mapoly0091s0075 Marchantia polymorpha HOM05D004273 ORTHO05D031172 5.2e-10 70.1 170 27.1
TPR.G17285 Trifolium pratense HOM05D004273 ORTHO05D005041 8.9e-10 69.3 151 31.1
TAR365G0033 Trochodendron aralioides HOM05D000394 ORTHO05D000299 2.6e-09 67.8 278 23.7
TAR365G1091 Trochodendron aralioides HOM05D000394 ORTHO05D000299 2.6e-09 67.8 278 23.7
HPP92_019826 Vanilla planifolia HOM05D000050 ORTHO05D005041 4.4e-09 67.0 70 48.6
arahy.Tifrunner.gnm1.ann1.TJQ42N Arachis hypogaea HOM05D001180 ORTHO05D001055 1.7e-08 65.1 253 27.3
Nn5g29693 Nelumbo nucifera HOM05D000394 ORTHO05D000299 4.9e-08 63.5 246 26.4
Potri.007G025900 Populus trichocarpa HOM05D001180 ORTHO05D001055 1.1e-07 62.4 212 27.4
Ah.08g214320 Amaranthus hybridus HOM05D000394 ORTHO05D000299 1.9e-07 61.6 245 22.0
SalBow7G3499 Salvia bowleyana HOM05D000394 ORTHO05D000299 2.4e-07 61.2 324 22.8
AUR62008917 Chenopodium quinoa HOM05D000394 ORTHO05D000299 4.1e-07 60.5 216 25.0
Sabra04G0105400 Salix brachista HOM05D000394 ORTHO05D000299 4.1e-07 60.5 224 24.1
AUR62001093 Chenopodium quinoa HOM05D000394 ORTHO05D000299 7.1e-07 59.7 216 25.0
BcaC06g34936 Brassica carinata HOM05D001180 ORTHO05D001055 1.6e-06 58.5 195 24.6
C07p21630 Brassica napus HOM05D001180 ORTHO05D001055 1.6e-06 58.5 195 24.6
Potri.004G157600 Populus trichocarpa HOM05D000394 ORTHO05D000299 2.1e-06 58.2 224 23.7
Potri.009G119400 Populus trichocarpa HOM05D000394 ORTHO05D000299 2.1e-06 58.2 225 23.6
Atru.chr3.569 Acer truncatum HOM05D001180 ORTHO05D001055 2.7e-06 57.8 212 24.5
BcaB07g32236 Brassica carinata HOM05D001180 ORTHO05D001055 2.7e-06 57.8 191 24.6
MD05G1174600 Malus domestica HOM05D000394 ORTHO05D000299 2.7e-06 57.8 272 22.1
Sc05g0002150 Simmondsia chinensis HOM05D000394 ORTHO05D000299 2.7e-06 57.8 245 24.1
CANSAT01G0938 Cannabis sativa HOM05D001180 ORTHO05D001055 3.5e-06 57.4 210 24.3
AL1G35630 Arabidopsis lyrata HOM05D001180 ORTHO05D001055 4.6e-06 57.0 201 23.9
arahy.Tifrunner.gnm1.ann1.TCBQ1E Arachis hypogaea HOM05D000394 ORTHO05D000299 4.6e-06 57.0 126 29.4
A09p42590 Brassica napus HOM05D001180 ORTHO05D001055 4.6e-06 57.0 236 22.9
BraA09t39734Z Brassica rapa HOM05D001180 ORTHO05D001055 4.6e-06 57.0 236 22.9
Lj4A786T46 Lonicera japonica HOM05D001180 ORTHO05D001055 4.6e-06 57.0 182 29.1
Sabra09G0091900 Salix brachista HOM05D000394 ORTHO05D000299 7.8e-06 56.2 213 25.8
THA.LOC104813124 Tarenaya hassleriana HOM05D001180 ORTHO05D001055 7.8e-06 56.2 275 24.4


User provided reference genes

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