Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 0.0e+00 1218.0 597 100.0
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 4.2e-190 668.7 585 60.2
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 6.3e-130 468.8 598 44.8
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 2.9e-122 443.4 596 42.1
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 5.0e-119 432.6 584 42.1
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 1.1e-118 431.4 591 40.1
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 1.9e-118 430.6 593 41.3
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 1.9e-118 430.6 590 40.8
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 1.6e-117 427.6 586 41.6
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 2.3e-116 423.7 582 41.4
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 5.2e-116 422.5 581 41.0
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 5.2e-116 422.5 595 41.0
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 1.2e-115 421.4 584 41.1
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 3.4e-115 419.9 591 40.4
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 5.8e-115 419.1 579 40.6
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 7.5e-115 418.7 579 40.6
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 1.3e-114 417.9 584 40.9
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 1.7e-114 417.5 585 40.5
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 2.2e-114 417.2 592 40.0
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 6.4e-114 415.6 579 40.2
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 8.3e-114 415.2 600 39.0
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 2.1e-112 410.6 579 40.4
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 1.3e-111 407.9 575 41.0
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 1.7e-111 407.5 583 40.5
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 2.3e-111 407.1 592 39.5
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 5.0e-111 406.0 603 39.8
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 3.3e-110 403.3 603 39.5
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 7.3e-110 402.1 592 39.2
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 9.5e-110 401.7 603 39.5
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 9.5e-110 401.7 594 39.1
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 1.1e-108 398.3 576 38.9
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 3.1e-108 396.7 605 40.5
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 1.2e-107 394.8 606 40.9
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 2.0e-107 394.0 590 39.7
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 2.0e-107 394.0 593 38.3
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 4.4e-107 392.9 607 38.6
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 7.5e-107 392.1 605 40.2
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 7.5e-107 392.1 605 40.2
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 6.4e-106 389.0 593 38.4
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.1e-105 388.3 601 38.6
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 1.9e-105 387.5 590 39.7
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 1.9e-105 387.5 601 39.1
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 1.9e-105 387.5 593 37.3
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 5.4e-105 386.0 597 37.0
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 9.2e-105 385.2 581 39.9
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 3.5e-104 383.3 595 38.3
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 3.5e-104 383.3 597 38.5
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 2.3e-103 380.6 590 38.6
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 3.9e-103 379.8 594 38.0
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 8.6e-103 378.6 598 38.3
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 1.5e-102 377.9 595 37.6
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 1.5e-102 377.9 592 37.3
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 1.5e-102 377.9 597 37.0
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 3.3e-102 376.7 594 39.1
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 5.6e-102 375.9 593 38.1
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 4.7e-101 372.9 597 36.0
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 6.2e-101 372.5 591 37.2
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 1.1e-100 371.7 592 36.8
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 1.4e-100 371.3 607 39.5
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 8.9e-100 368.6 583 37.0
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 2.0e-99 367.5 604 38.2
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 2.6e-99 367.1 595 38.0
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 3.8e-98 363.2 569 37.3
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 4.9e-98 362.8 577 37.1
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 6.4e-98 362.5 562 38.4
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 1.1e-97 361.7 597 37.5
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 1.9e-97 360.9 577 37.1
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 3.2e-97 360.1 584 38.9
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 2.1e-96 357.5 593 37.6
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 6.0e-96 355.9 582 37.3
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 6.0e-96 355.9 602 35.2
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 7.8e-96 355.5 592 35.6
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.3e-95 354.8 602 35.4
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 1.7e-95 354.4 565 39.3
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 2.3e-95 354.0 613 36.1
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 2.3e-95 354.0 494 39.7
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 3.9e-95 353.2 602 35.5
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 1.2e-93 348.2 596 35.6
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 1.6e-93 347.8 612 34.6
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 2.0e-91 340.9 533 38.5
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 6.4e-90 335.9 527 38.7
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 9.3e-89 332.0 593 35.2
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 7.8e-88 328.9 612 34.2
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 1.0e-87 328.6 513 38.8
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 1.3e-87 328.2 514 38.9
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 2.0e-83 314.3 497 38.2
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 3.2e-81 307.0 481 38.5
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 1.3e-79 301.6 540 35.7
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 2.5e-78 297.4 583 32.8
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 4.8e-77 293.1 560 33.4
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 1.4e-76 291.6 454 37.2
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 9.3e-73 278.9 337 44.8
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 3.5e-72 276.9 559 33.1
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 4.9e-66 256.5 405 40.7
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 1.4e-65 255.0 403 36.0
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 4.6e-64 250.0 469 35.2
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 5.3e-60 236.5 828 24.8
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 4.5e-59 233.4 149 83.2
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 7.7e-59 232.6 360 38.9
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 1.3e-58 231.9 617 29.5
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 2.5e-57 227.6 613 28.4
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 2.1e-56 224.6 368 38.0
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 2.8e-53 214.2 583 28.8
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 2.5e-49 201.1 381 33.6
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 2.5e-49 201.1 601 27.3
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 9.1e-44 182.6 364 34.6
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 1.5e-43 181.8 230 43.9
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 1.7e-42 178.3 336 34.2
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 5.0e-42 176.8 242 40.9
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.9e-41 174.9 304 35.5
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 9.4e-41 172.6 303 38.3
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 7.4e-38 162.9 210 40.0
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 2.9e-34 151.0 197 42.1
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 2.9e-34 151.0 259 35.9
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.6e-32 145.2 270 31.9
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 3.6e-32 144.1 189 41.3
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 8.0e-32 142.9 451 27.9
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 1.3e-29 135.6 254 33.1
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 3.2e-25 120.9 145 46.2
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 2.1e-24 118.2 665 23.3
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 5.0e-18 97.1 201 29.4
Zm00001eb047190 Zea mays HOM05D002969 ORTHO05D003308 5.0e-18 97.1 55 80.0
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 8.9e-15 86.3 124 39.5
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 5.0e-10 70.5 84 50.0


User provided reference genes

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