Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 5.2e-108 394.4 203 100.0
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 8.1e-69 264.2 183 76.0
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 5.4e-65 251.5 234 62.0
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 4.9e-42 175.3 195 51.3
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.9e-41 173.3 155 56.8
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 7.1e-41 171.4 181 53.6
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 7.1e-41 171.4 185 52.4
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-40 170.6 161 55.9
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 2.7e-40 169.5 192 51.0
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 2.7e-40 169.5 192 51.0
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 2.7e-40 169.5 192 51.0
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 2.7e-40 169.5 177 51.4
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 3.5e-40 169.1 151 57.6
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 4.6e-40 168.7 161 55.3
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 4.6e-40 168.7 151 56.3
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 6.0e-40 168.3 195 51.3
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 6.0e-40 168.3 202 48.0
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 6.0e-40 168.3 182 52.2
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 7.9e-40 167.9 180 53.3
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 1.0e-39 167.5 198 50.5
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 1.0e-39 167.5 184 51.6
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 1.8e-39 166.8 155 57.4
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 2.3e-39 166.4 198 48.5
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 2.3e-39 166.4 176 52.3
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 2.3e-39 166.4 174 54.0
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 3.0e-39 166.0 197 47.7
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 6.7e-39 164.9 196 48.5
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 6.7e-39 164.9 168 51.8
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 6.7e-39 164.9 175 51.4
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 6.7e-39 164.9 200 46.5
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 8.7e-39 164.5 180 50.0
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 8.7e-39 164.5 180 50.0
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 8.7e-39 164.5 172 51.7
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 1.1e-38 164.1 175 52.6
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 1.5e-38 163.7 184 50.0
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 1.5e-38 163.7 151 57.0
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.5e-38 163.7 156 56.4
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 1.5e-38 163.7 199 49.2
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 2.5e-38 162.9 173 52.6
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 2.5e-38 162.9 176 51.7
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 3.3e-38 162.5 176 52.3
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 5.6e-38 161.8 166 54.2
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 7.4e-38 161.4 153 55.6
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 9.6e-38 161.0 169 55.0
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 2.1e-37 159.8 197 48.2
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 2.1e-37 159.8 205 48.3
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 2.8e-37 159.5 176 51.7
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 3.7e-37 159.1 176 48.9
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 3.7e-37 159.1 151 55.6
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 4.8e-37 158.7 176 49.4
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 6.2e-37 158.3 155 56.1
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 6.2e-37 158.3 181 48.6
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 8.1e-37 157.9 203 44.3
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 1.4e-36 157.1 176 52.3
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 1.4e-36 157.1 175 50.9
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.4e-36 157.1 172 51.2
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 2.4e-36 156.4 149 53.0
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 2.4e-36 156.4 175 50.9
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 2.4e-36 156.4 180 49.4
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 3.1e-36 156.0 198 47.0
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 3.1e-36 156.0 189 45.0
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 3.1e-36 156.0 172 47.7
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 4.0e-36 155.6 202 47.0
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 6.9e-36 154.8 166 51.8
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 9.0e-36 154.5 180 49.4
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 2.6e-35 152.9 157 52.2
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 2.6e-35 152.9 173 50.9
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 2.6e-35 152.9 152 52.6
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 3.4e-35 152.5 151 55.0
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 7.6e-35 151.4 200 46.0
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 1.3e-34 150.6 187 45.5
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 1.3e-34 150.6 151 51.7
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.3e-34 150.6 176 52.3
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 1.7e-34 150.2 175 48.6
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 2.9e-34 149.4 153 51.0
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 6.5e-34 148.3 207 44.9
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 8.4e-34 147.9 178 44.9
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 8.4e-34 147.9 151 53.6
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 1.4e-33 147.1 154 50.0
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 1.4e-33 147.1 155 49.0
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 3.2e-33 146.0 152 51.3
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 3.2e-33 146.0 183 45.9
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 4.2e-33 145.6 139 54.7
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 7.1e-33 144.8 178 46.1
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 9.3e-33 144.4 157 50.3
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 1.2e-32 144.1 157 48.4
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.2e-32 144.1 161 48.4
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 1.6e-32 143.7 157 49.7
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 2.1e-32 143.3 202 42.6
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 2.1e-32 143.3 150 48.7
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 2.1e-32 143.3 161 49.1
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 3.5e-32 142.5 137 52.6
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 3.5e-32 142.5 142 51.4
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 6.0e-32 141.7 144 52.8
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.0e-31 141.0 138 58.0
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 3.0e-31 139.4 142 53.5
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 6.7e-31 138.3 153 50.3
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 4.3e-30 135.6 133 52.6
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 1.3e-29 134.0 253 35.6
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.6e-29 133.7 169 46.2
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 5.3e-28 128.6 121 58.7
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 1.7e-26 123.6 161 43.5
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 4.2e-25 119.0 117 55.6
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 4.2e-25 119.0 114 54.4
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 4.2e-25 119.0 113 57.5
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 7.2e-25 118.2 112 57.1
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 9.3e-25 117.9 114 54.4
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 2.1e-24 116.7 112 55.4
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.0e-23 114.4 185 41.1
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 2.3e-23 113.2 157 45.2
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 3.0e-23 112.8 125 49.6
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 3.0e-23 112.8 125 49.6
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 3.9e-23 112.5 124 54.0
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 6.7e-23 111.7 161 45.3
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 2.5e-22 109.8 185 37.8
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 2.2e-21 106.7 116 50.9
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 3.7e-21 105.9 118 49.2
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 8.2e-21 104.8 156 43.6
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 1.4e-20 104.0 138 45.7
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 1.5e-19 100.5 111 54.1
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 7.7e-19 98.2 136 43.4
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 7.7e-19 98.2 116 49.1
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 2.9e-18 96.3 113 48.7
Zm00001eb212650 Zea mays HOM05D005768 ORTHO05D007100 7.2e-17 91.7 71 78.9
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 2.1e-16 90.1 81 54.3
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.7e-13 80.5 67 65.7
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 9.1e-12 74.7 74 52.7
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 1.2e-08 64.3 69 46.4
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.8e-07 60.5 45 55.6
MCO02G048 Micromonas commoda HOM05D005768 ORTHO05D007100 2.3e-07 60.1 184 31.0
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-06 57.8 165 30.3
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 1.1e-06 57.8 163 30.7
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 7.4e-06 55.1 73 45.2


User provided reference genes

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