Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb060640 Zea mays HOM05D005403 ORTHO05D006572 1.6e-118 429.5 217 100.0
Zm00001eb213000 Zea mays HOM05D005403 ORTHO05D006572 1.1e-71 273.9 195 75.4
Os03g0795500 Oryza sativa ssp. japonica HOM05D005403 ORTHO05D006572 2.2e-64 249.6 191 69.6
Potri.013G039500 Populus trichocarpa HOM05D005403 ORTHO05D006572 9.3e-55 217.6 177 65.5
Carub.0003s0395 Capsella rubella HOM05D005403 ORTHO05D006572 1.2e-54 217.2 171 64.9
TWI74G0584 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 1.6e-54 216.9 170 65.3
AL3G14940 Arabidopsis lyrata HOM05D005403 ORTHO05D006572 2.7e-54 216.1 171 64.3
Sp3g03620 Schrenkiella parvula HOM05D005403 ORTHO05D006572 2.7e-54 216.1 171 64.3
THA.LOC104818636 Tarenaya hassleriana HOM05D005403 ORTHO05D006572 2.7e-54 216.1 170 66.5
Thhalv10021632m.g Eutrema salsugineum HOM05D005403 ORTHO05D006572 4.6e-54 215.3 175 62.9
TWI77G0725 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 4.6e-54 215.3 170 64.7
Nitab4.5_0005582g0040 Nicotiana tabacum HOM05D005403 ORTHO05D006572 6.0e-54 214.9 170 64.7
BcaB04g21347 Brassica carinata HOM05D005403 ORTHO05D006572 7.8e-54 214.5 171 63.7
BcaNung06422 Brassica carinata HOM05D005403 ORTHO05D006572 7.8e-54 214.5 171 63.7
CARHR079030 Cardamine hirsuta HOM05D005403 ORTHO05D006572 7.8e-54 214.5 171 63.7
AT3G04780 Arabidopsis thaliana HOM05D005403 ORTHO05D006572 1.0e-53 214.2 171 64.3
A05p42780 Brassica napus HOM05D005403 ORTHO05D006572 1.0e-53 214.2 170 64.7
C05p62500 Brassica napus HOM05D005403 ORTHO05D006572 1.0e-53 214.2 170 64.7
Manes.09G153900 Manihot esculenta HOM05D005403 ORTHO05D006572 1.0e-53 214.2 168 65.5
Peaxi162Scf00282g00219 Petunia axillaris HOM05D005403 ORTHO05D006572 1.0e-53 214.2 170 64.7
TAR362G0997 Trochodendron aralioides HOM05D005403 ORTHO05D006572 1.0e-53 214.2 170 64.7
TAR365G0414 Trochodendron aralioides HOM05D005403 ORTHO05D006572 1.0e-53 214.2 177 63.3
BolC1t05726H Brassica oleracea HOM05D005403 ORTHO05D006572 1.3e-53 213.8 171 63.2
BraA01t04505Z Brassica rapa HOM05D005403 ORTHO05D006572 1.3e-53 213.8 171 63.2
Nitab4.5_0004469g0080 Nicotiana tabacum HOM05D005403 ORTHO05D006572 2.3e-53 213.0 170 64.7
GSVIVG01021827001 Vitis vinifera HOM05D005403 ORTHO05D006572 2.3e-53 213.0 177 63.3
BNapus_Darmor_BZH_scaffold_78p01010 Brassica napus HOM05D005403 ORTHO05D006572 3.9e-53 212.2 171 63.2
BraA05t22974Z Brassica rapa HOM05D005403 ORTHO05D006572 3.9e-53 212.2 170 64.1
Actinidia30938 Actinidia chinensis HOM05D005403 ORTHO05D006572 5.1e-53 211.8 174 62.1
CANSAT54G1830 Cannabis sativa HOM05D005403 ORTHO05D006572 5.1e-53 211.8 175 65.1
CAN.G134.109 Capsicum annuum HOM05D005403 ORTHO05D006572 5.1e-53 211.8 170 62.9
Aa31LG5G15180 Aethionema arabicum HOM05D005403 ORTHO05D006572 6.6e-53 211.5 171 63.2
Cc02_g31920 Coffea canephora HOM05D005403 ORTHO05D006572 8.7e-53 211.1 170 62.9
Lj5g0020047 Lotus japonicus HOM05D005403 ORTHO05D006572 8.7e-53 211.1 170 61.8
SalBow8G2599 Salvia bowleyana HOM05D005403 ORTHO05D006572 8.7e-53 211.1 174 62.6
CiPaw.08G124800 Carya illinoinensis HOM05D005403 ORTHO05D006572 1.5e-52 210.3 170 63.5
Actinidia05774 Actinidia chinensis HOM05D005403 ORTHO05D006572 1.9e-52 209.9 168 63.1
Sc09g0003870 Simmondsia chinensis HOM05D005403 ORTHO05D006572 1.9e-52 209.9 169 63.9
SGA_v2.0_scaffold81G26087 Striga asiatica HOM05D005403 ORTHO05D006572 1.9e-52 209.9 170 61.8
Eucgr.B02113 Eucalyptus grandis HOM05D005403 ORTHO05D006572 3.3e-52 209.1 202 56.9
HanXRQChr15g0493451 Helianthus annuus HOM05D005403 ORTHO05D006572 3.3e-52 209.1 168 63.7
arahy.Tifrunner.gnm1.ann1.XU8J57 Arachis hypogaea HOM05D005403 ORTHO05D006572 4.3e-52 208.8 170 62.4
PGSC0003DMG400019449 Solanum tuberosum HOM05D005403 ORTHO05D006572 4.3e-52 208.8 170 62.4
HPP92_015625 Vanilla planifolia HOM05D005403 ORTHO05D006572 4.3e-52 208.8 169 62.7
MD12G1238700 Malus domestica HOM05D005403 ORTHO05D006572 5.6e-52 208.4 168 63.1
Oeu027466.2 Olea europaea HOM05D005403 ORTHO05D006572 5.6e-52 208.4 180 60.0
RcHm_v2.0_Chr3g0451391 Rosa chinensis HOM05D005403 ORTHO05D006572 5.6e-52 208.4 168 63.7
Thecc.05G286500 Theobroma cacao HOM05D005403 ORTHO05D006572 5.6e-52 208.4 177 62.1
Glyma.10G161600 Glycine max HOM05D005403 ORTHO05D006572 7.3e-52 208.0 170 62.4
Phvul.007G187000 Phaseolus vulgaris HOM05D005403 ORTHO05D006572 7.3e-52 208.0 170 60.6
Lalb_Chr06g0168031 Lupinus albus HOM05D005403 ORTHO05D006572 9.6e-52 207.6 175 60.0
Psat6g146440 Pisum sativum HOM05D005403 ORTHO05D006572 9.6e-52 207.6 184 61.4
Hund06962 Selenicereus undatus HOM05D005403 ORTHO05D006572 9.6e-52 207.6 168 64.3
Solyc01g097450.3 Solanum lycopersicum HOM05D005403 ORTHO05D006572 9.6e-52 207.6 177 59.9
VMungo0720G0096 Vigna mungo HOM05D005403 ORTHO05D006572 9.6e-52 207.6 170 60.6
FAN05G1135 Fragaria x ananassa HOM05D005403 ORTHO05D006572 1.3e-51 207.2 168 63.7
FAN05G5291 Fragaria x ananassa HOM05D005403 ORTHO05D006572 1.3e-51 207.2 168 63.7
MD04G1222600 Malus domestica HOM05D005403 ORTHO05D006572 1.3e-51 207.2 168 63.1
Sopen01g041120 Solanum pennellii HOM05D005403 ORTHO05D006572 1.3e-51 207.2 170 61.2
AUR62001024 Chenopodium quinoa HOM05D005403 ORTHO05D006572 1.6e-51 206.8 168 61.9
Hma1.2p1_0332F.1_g127630 Hydrangea macrophylla HOM05D005403 ORTHO05D006572 1.6e-51 206.8 170 61.8
Medtr1g080960 Medicago truncatula HOM05D005403 ORTHO05D006572 1.6e-51 206.8 175 61.1
Prupe.6G341600 Prunus persica HOM05D005403 ORTHO05D006572 1.6e-51 206.8 168 63.1
Duzib106G1152 Durio zibethinus HOM05D005403 ORTHO05D006572 2.1e-51 206.5 177 61.6
PSO210G2729 Papaver somniferum HOM05D005403 ORTHO05D006572 3.6e-51 205.7 175 58.3
PSO832G0823 Papaver somniferum HOM05D005403 ORTHO05D006572 3.6e-51 205.7 175 58.3
Manes.08G133000 Manihot esculenta HOM05D005403 ORTHO05D006572 4.8e-51 205.3 170 63.5
unitig_21.g20052 Utricularia gibba HOM05D005403 ORTHO05D006572 4.8e-51 205.3 168 62.5
SGA_v2.0_scaffold80G25907 Striga asiatica HOM05D005403 ORTHO05D006572 6.2e-51 204.9 170 60.0
ClCG02G016540 Citrullus lanatus HOM05D005403 ORTHO05D006572 8.1e-51 204.5 179 60.9
Duzib177G0905 Durio zibethinus HOM05D005403 ORTHO05D006572 8.1e-51 204.5 188 59.6
FAN09G2181 Fragaria x ananassa HOM05D005403 ORTHO05D006572 8.1e-51 204.5 168 63.7
Lalb_Chr02g0148771 Lupinus albus HOM05D005403 ORTHO05D006572 8.1e-51 204.5 174 59.8
FvH4_6g03140 Fragaria vesca HOM05D005403 ORTHO05D006572 1.1e-50 204.1 168 63.1
MBI11_g35357_MAGBIO Magnolia biondii HOM05D005403 ORTHO05D006572 1.1e-50 204.1 177 61.6
Nn1g02427 Nelumbo nucifera HOM05D005403 ORTHO05D006572 1.8e-50 203.4 171 62.0
Sed0002619 Sechium edule HOM05D005403 ORTHO05D006572 1.8e-50 203.4 177 61.0
PGR083G0704 Punica granatum HOM05D005403 ORTHO05D006572 2.4e-50 203.0 170 61.8
Ciclev10002653m.g Citrus clementina HOM05D005403 ORTHO05D006572 3.1e-50 202.6 173 60.1
Migut.N01905 Erythranthe guttata HOM05D005403 ORTHO05D006572 3.1e-50 202.6 173 59.5
FAN02G1200 Fragaria x ananassa HOM05D005403 ORTHO05D006572 3.1e-50 202.6 183 60.7
FAN14G0649 Fragaria x ananassa HOM05D005403 ORTHO05D006572 4.0e-50 202.2 168 61.9
Gohir.A13G170400 Gossypium hirsutum HOM05D005403 ORTHO05D006572 9.0e-50 201.1 188 57.4
Gorai.013G201200 Gossypium raimondii HOM05D005403 ORTHO05D006572 2.6e-49 199.5 184 58.2
CsaV3_2G004230 Cucumis sativus L. HOM05D005403 ORTHO05D006572 3.4e-49 199.1 186 58.6
Gohir.D13G175800 Gossypium hirsutum HOM05D005403 ORTHO05D006572 4.5e-49 198.7 188 56.9
Nn6g34152 Nelumbo nucifera HOM05D005403 ORTHO05D006572 5.8e-49 198.4 177 58.8
Ah.06g192240 Amaranthus hybridus HOM05D005403 ORTHO05D006572 7.6e-49 198.0 168 61.3
ECA232G3347 Erigeron canadensis HOM05D005403 ORTHO05D006572 1.3e-48 197.2 185 56.8
MELO3C004371.2 Cucumis melo HOM05D005403 ORTHO05D006572 1.7e-48 196.8 185 58.9
Gohir.D11G263600 Gossypium hirsutum HOM05D005403 ORTHO05D006572 2.2e-48 196.4 164 64.0
Sed0000415 Sechium edule HOM05D005403 ORTHO05D006572 2.9e-48 196.1 177 58.2
CDE07G0028 Ceratophyllum demersum HOM05D005403 ORTHO05D006572 8.4e-48 194.5 168 58.3
Ca_10048_v3 Cicer arietinum L. HOM05D005403 ORTHO05D006572 1.1e-47 194.1 170 58.2
Aqoxy2G03453 Aquilegia oxysepala HOM05D005403 ORTHO05D006572 2.1e-46 189.9 168 58.3
ATR0665G176 Amborella trichopoda HOM05D005403 ORTHO05D006572 3.5e-46 189.1 170 59.4
Cfa006448 Carpinus fangiana HOM05D005403 ORTHO05D006572 1.3e-45 187.2 150 64.0
Pp3c5_6010 Physcomitrium patens HOM05D005403 ORTHO05D006572 1.8e-45 186.8 183 52.5
Haze_04345 Corylus avellana HOM05D005403 ORTHO05D006572 3.0e-45 186.0 149 64.4
AUR62004927 Chenopodium quinoa HOM05D005403 ORTHO05D006572 3.9e-45 185.7 154 59.7
Sabra13G0036900 Salix brachista HOM05D005403 ORTHO05D006572 3.9e-45 185.7 161 61.5
COL.COLO4_15309 Corchorus olitorius HOM05D005403 ORTHO05D006572 8.7e-45 184.5 149 63.1
Gorai.007G283600 Gossypium raimondii HOM05D005403 ORTHO05D006572 1.5e-44 183.7 153 64.1
Gohir.A11G253700 Gossypium hirsutum HOM05D005403 ORTHO05D006572 1.9e-44 183.3 165 59.4
Sabra05G0045800 Salix brachista HOM05D005403 ORTHO05D006572 2.5e-44 183.0 161 60.2
SMO340G0197 Selaginella moellendorffii HOM05D005403 ORTHO05D006572 9.0e-42 174.5 184 48.9
SEGI_41475 Sequoiadendron giganteum HOM05D005403 ORTHO05D006572 2.0e-41 173.3 164 54.9
Mapoly0034s0051 Marchantia polymorpha HOM05D005403 ORTHO05D006572 1.7e-40 170.2 170 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2056 Anthoceros agrestis HOM05D005403 ORTHO05D006572 2.2e-40 169.9 161 52.2
DCAR_027617 Daucus carota HOM05D005403 ORTHO05D006572 4.9e-40 168.7 160 56.2
Atru.chr2.798 Acer truncatum HOM05D005403 ORTHO05D006572 2.1e-38 163.3 146 60.3
Potri.005G052100 Populus trichocarpa HOM05D005403 ORTHO05D006572 4.3e-36 155.6 177 52.0
Rhsim10G0108600 Rhododendron simsii HOM05D005403 ORTHO05D006572 6.2e-35 151.8 284 35.6
vmacro05240 Vaccinium macrocarpon HOM05D005403 ORTHO05D006572 9.0e-34 147.9 107 70.1
TPR.G32522 Trifolium pratense HOM05D005403 ORTHO05D006572 1.5e-33 147.1 95 75.8
Lsat_1_v5_gn_4_137100 Lactuca sativa HOM05D005403 ORTHO05D006572 3.2e-31 139.4 147 50.3
Lj7A489G21 Lonicera japonica HOM05D005403 ORTHO05D006572 1.0e-29 134.4 185 45.9
Dinv20864 Davidia involucrata HOM05D005403 ORTHO05D006572 1.9e-28 130.2 110 58.2
EL10Ac4g09116 Beta vulgaris HOM05D005403 ORTHO05D006572 2.5e-28 129.8 168 45.8
Dinv05370 Davidia involucrata HOM05D005403 ORTHO05D006572 9.6e-28 127.9 120 55.0
PRCOL_00004155 Prasinoderma coloniale HOM05D005403 ORTHO05D006572 4.8e-27 125.6 165 42.4
QL03p025001 Quercus lobata HOM05D005403 ORTHO05D006572 3.1e-26 122.9 81 74.1
Sopen04g005140 Solanum pennellii HOM05D005403 ORTHO05D006572 6.9e-26 121.7 156 42.9
CBR_g8269 Chara braunii HOM05D005403 ORTHO05D006572 2.6e-25 119.8 164 43.3
Pp3c6_27050 Physcomitrium patens HOM05D005403 ORTHO05D006572 1.0e-24 117.9 165 38.8
Solyc04g010010.3 Solanum lycopersicum HOM05D005403 ORTHO05D006572 8.5e-24 114.8 156 41.7
Cre17.g730250 Chlamydomonas reinhardtii HOM05D005403 ORTHO05D006572 2.5e-23 113.2 163 37.4
CAN.G141.8 Capsicum annuum HOM05D005403 ORTHO05D006572 9.3e-23 111.3 96 58.3
CDE06G0313 Ceratophyllum demersum HOM05D005403 ORTHO05D006572 1.6e-22 110.5 108 50.0
Solyc04g010030.1 Solanum lycopersicum HOM05D005403 ORTHO05D006572 3.9e-21 105.9 158 38.6
Sopen04g005160 Solanum pennellii HOM05D005403 ORTHO05D006572 5.1e-21 105.5 158 38.6
DCAR_011698 Daucus carota HOM05D005403 ORTHO05D006572 5.7e-20 102.1 68 76.5
Haze_27143 Corylus avellana HOM05D005403 ORTHO05D006572 2.8e-19 99.8 158 35.4
MCO08G264 Micromonas commoda HOM05D005403 ORTHO05D006572 1.7e-16 90.5 162 33.3
PGSC0003DMG400011476 Solanum tuberosum HOM05D005403 ORTHO05D006572 4.4e-12 75.9 115 38.3
TPR.G30942 Trifolium pratense HOM05D005403 ORTHO05D006572 2.2e-11 73.6 88 43.2
QL03p025010 Quercus lobata HOM05D005403 ORTHO05D006572 1.8e-10 70.5 76 48.7
Zm00001eb321280 Zea mays HOM05D001072 ORTHO05D446730 7.2e-07 58.5 61 52.5
DCAR_011699 Daucus carota HOM05D005403 ORTHO05D006572 2.7e-06 56.6 35 65.7
Mapoly0027s0002 Marchantia polymorpha HOM05D006661 ORTHO05D008369 3.6e-06 56.2 81 34.6
Cc02_g31890 Coffea canephora HOM05D005403 ORTHO05D006572 6.1e-06 55.5 30 73.3


User provided reference genes

Program Settings