Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb059810 Zea mays HOM05D006082 ORTHO05D007616 8.8e-114 413.7 217 100.0
Os03g0784300 Oryza sativa ssp. japonica HOM05D006082 ORTHO05D007616 1.4e-74 283.5 201 73.1
HPP92_015681 Vanilla planifolia HOM05D006082 ORTHO05D007616 8.7e-45 184.5 197 48.2
QL01p017595 Quercus lobata HOM05D006082 ORTHO05D007616 2.1e-43 179.9 194 49.0
TAR375G0813 Trochodendron aralioides HOM05D006082 ORTHO05D007616 3.6e-43 179.1 200 47.0
Potri.014G107300 Populus trichocarpa HOM05D006082 ORTHO05D007616 5.3e-42 175.3 191 50.8
HanXRQChr14g0454421 Helianthus annuus HOM05D006082 ORTHO05D007616 6.9e-42 174.9 189 48.7
Duzib133G0864 Durio zibethinus HOM05D006082 ORTHO05D007616 1.7e-40 170.2 192 48.4
ATR1136G056 Amborella trichopoda HOM05D006082 ORTHO05D007616 2.9e-40 169.5 189 47.1
Actinidia33031 Actinidia chinensis HOM05D006082 ORTHO05D007616 4.2e-39 165.6 193 45.1
PGR031G0479 Punica granatum HOM05D006082 ORTHO05D007616 4.2e-39 165.6 204 43.6
Eucgr.G03261 Eucalyptus grandis HOM05D006082 ORTHO05D007616 5.5e-39 165.2 190 46.3
Phvul.001G121700 Phaseolus vulgaris HOM05D006082 ORTHO05D007616 2.1e-38 163.3 194 43.3
Nn1g00467 Nelumbo nucifera HOM05D006082 ORTHO05D007616 2.7e-38 162.9 194 46.4
ECA238G2330 Erigeron canadensis HOM05D006082 ORTHO05D007616 4.6e-38 162.2 189 45.5
TPR.G16094 Trifolium pratense HOM05D006082 ORTHO05D007616 6.0e-38 161.8 191 44.5
Gorai.007G114300 Gossypium raimondii HOM05D006082 ORTHO05D007616 7.9e-38 161.4 188 47.3
Lalb_Chr17g0343121 Lupinus albus HOM05D006082 ORTHO05D007616 1.0e-37 161.0 197 44.7
Glyma.03G126300 Glycine max HOM05D006082 ORTHO05D007616 1.8e-37 160.2 194 42.8
Gohir.A11G102200 Gossypium hirsutum HOM05D006082 ORTHO05D007616 2.3e-37 159.8 188 46.8
THA.LOC104815904 Tarenaya hassleriana HOM05D006082 ORTHO05D007616 2.3e-37 159.8 191 47.6
Ciclev10022037m.g Citrus clementina HOM05D006082 ORTHO05D007616 3.9e-37 159.1 190 46.3
CsaV3_3G007110 Cucumis sativus L. HOM05D006082 ORTHO05D007616 5.1e-37 158.7 196 46.4
Lj1g0004702 Lotus japonicus HOM05D006082 ORTHO05D007616 5.1e-37 158.7 201 42.3
GSVIVG01027464001 Vitis vinifera HOM05D006082 ORTHO05D007616 6.7e-37 158.3 189 47.1
Psat3g079600 Pisum sativum HOM05D006082 ORTHO05D007616 8.7e-37 157.9 190 43.2
Atru.chr5.795 Acer truncatum HOM05D006082 ORTHO05D007616 1.9e-36 156.8 195 43.1
Cc03_g11310 Coffea canephora HOM05D006082 ORTHO05D007616 1.9e-36 156.8 194 42.3
Prupe.2G201100 Prunus persica HOM05D006082 ORTHO05D007616 1.9e-36 156.8 194 46.9
MSTRG.15681 Avicennia marina HOM05D006082 ORTHO05D007616 5.6e-36 155.2 193 43.5
Medtr7g089460 Medicago truncatula HOM05D006082 ORTHO05D007616 9.6e-36 154.5 189 43.4
Aqoxy5G00354 Aquilegia oxysepala HOM05D006082 ORTHO05D007616 1.6e-35 153.7 197 44.2
Lsat_1_v5_gn_2_88861 Lactuca sativa HOM05D006082 ORTHO05D007616 2.1e-35 153.3 189 45.0
CDE08G0270 Ceratophyllum demersum HOM05D006082 ORTHO05D007616 2.8e-35 152.9 194 43.8
Migut.L00265 Erythranthe guttata HOM05D006082 ORTHO05D007616 2.8e-35 152.9 193 41.5
Glyma.19G129400 Glycine max HOM05D006082 ORTHO05D007616 2.8e-35 152.9 197 42.6
Thecc.01G331100 Theobroma cacao HOM05D006082 ORTHO05D007616 6.2e-35 151.8 192 44.8
Dinv04258 Davidia involucrata HOM05D006082 ORTHO05D007616 8.1e-35 151.4 194 44.3
MD01G1091900 Malus domestica HOM05D006082 ORTHO05D007616 1.1e-34 151.0 193 45.6
PSO675G6409 Papaver somniferum HOM05D006082 ORTHO05D007616 1.1e-34 151.0 190 46.8
Ah.01g019340 Amaranthus hybridus HOM05D006082 ORTHO05D007616 1.4e-34 150.6 207 42.5
TWI14G1025 Tripterygium wilfordii HOM05D006082 ORTHO05D007616 1.8e-34 150.2 191 43.5
arahy.Tifrunner.gnm1.ann1.6SRZ86 Arachis hypogaea HOM05D006082 ORTHO05D007616 3.1e-34 149.4 194 43.3
Ca_08380_v3 Cicer arietinum L. HOM05D006082 ORTHO05D007616 4.0e-34 149.1 168 47.0
FAN06G3489 Fragaria x ananassa HOM05D006082 ORTHO05D007616 5.3e-34 148.7 193 44.6
Nitab4.5_0000743g0220 Nicotiana tabacum HOM05D006082 ORTHO05D007616 6.9e-34 148.3 195 43.1
PGSC0003DMG400016241 Solanum tuberosum HOM05D006082 ORTHO05D007616 6.9e-34 148.3 197 41.6
FvH4_7g17940 Fragaria vesca HOM05D006082 ORTHO05D007616 1.5e-33 147.1 193 44.0
PSO675G6921 Papaver somniferum HOM05D006082 ORTHO05D007616 1.5e-33 147.1 190 46.8
CAN.G691.19 Capsicum annuum HOM05D006082 ORTHO05D007616 2.6e-33 146.4 197 41.1
arahy.Tifrunner.gnm1.ann1.9R6DDK Arachis hypogaea HOM05D006082 ORTHO05D007616 4.5e-33 145.6 194 42.3
MELO3C005932.2 Cucumis melo HOM05D006082 ORTHO05D007616 5.8e-33 145.2 202 43.6
RcHm_v2.0_Chr1g0361381 Rosa chinensis HOM05D006082 ORTHO05D007616 1.0e-32 144.4 195 43.1
AL6G51830 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 2.2e-32 143.3 194 42.8
Carub.0006s3568 Capsella rubella HOM05D006082 ORTHO05D007616 2.2e-32 143.3 194 42.3
FAN06G1515 Fragaria x ananassa HOM05D006082 ORTHO05D007616 2.2e-32 143.3 199 43.2
Haze_15761 Corylus avellana HOM05D006082 ORTHO05D007616 2.9e-32 142.9 196 40.8
Thhalv10028930m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 3.8e-32 142.5 194 39.7
ClCG05G000050 Citrullus lanatus HOM05D006082 ORTHO05D007616 6.5e-32 141.7 206 41.7
Solyc11g008790.3 Solanum lycopersicum HOM05D006082 ORTHO05D007616 8.4e-32 141.4 189 40.7
Sopen11g004570 Solanum pennellii HOM05D006082 ORTHO05D007616 8.4e-32 141.4 189 40.7
C09p01160 Brassica napus HOM05D006082 ORTHO05D007616 4.2e-31 139.0 194 42.8
BraA10t42369Z Brassica rapa HOM05D006082 ORTHO05D007616 5.5e-31 138.7 189 41.3
CARHR001490 Cardamine hirsuta HOM05D006082 ORTHO05D007616 5.5e-31 138.7 190 41.6
A09p01070 Brassica napus HOM05D006082 ORTHO05D007616 7.1e-31 138.3 194 42.3
Sp6g01450 Schrenkiella parvula HOM05D006082 ORTHO05D007616 7.1e-31 138.3 194 42.8
A10p00890 Brassica napus HOM05D006082 ORTHO05D007616 9.3e-31 137.9 189 41.3
CSS0012451 Camellia sinensis var. sinensis HOM05D006082 ORTHO05D007616 2.7e-30 136.3 193 42.5
CiPaw.01G087100 Carya illinoinensis HOM05D006082 ORTHO05D007616 2.7e-30 136.3 180 42.8
AUR62016743 Chenopodium quinoa HOM05D006082 ORTHO05D007616 2.7e-30 136.3 199 38.7
SEGI_04405 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 3.5e-30 136.0 204 40.2
Sp1g01290 Schrenkiella parvula HOM05D006082 ORTHO05D007616 1.0e-29 134.4 192 39.6
FAN03G2817 Fragaria x ananassa HOM05D006082 ORTHO05D007616 1.3e-29 134.0 203 41.4
Peaxi162Scf00090g00046 Petunia axillaris HOM05D006082 ORTHO05D007616 1.3e-29 134.0 229 38.0
CARHR250170 Cardamine hirsuta HOM05D006082 ORTHO05D007616 1.8e-29 133.7 196 37.8
CANSAT56G1086 Cannabis sativa HOM05D006082 ORTHO05D007616 5.1e-29 132.1 173 43.9
AL1G11510 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 8.7e-29 131.3 188 41.0
BcaB03g13546 Brassica carinata HOM05D006082 ORTHO05D007616 8.7e-29 131.3 189 39.7
unitig_899.g14456 Utricularia gibba HOM05D003044 ORTHO05D007616 8.7e-29 131.3 181 43.6
FAN01G2730 Fragaria x ananassa HOM05D006082 ORTHO05D007616 1.1e-28 131.0 217 40.1
Aa31LG1G10340 Aethionema arabicum HOM05D006082 ORTHO05D007616 1.5e-28 130.6 198 39.9
BolC5t28877H Brassica oleracea HOM05D006082 ORTHO05D007616 1.9e-28 130.2 189 40.7
Carub.0001s0120 Capsella rubella HOM05D006082 ORTHO05D007616 1.9e-28 130.2 189 40.7
Thhalv10008618m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 4.3e-28 129.0 189 40.2
C05p00920 Brassica napus HOM05D006082 ORTHO05D007616 5.7e-28 128.6 189 40.2
Nitab4.5_0001677g0060 Nicotiana tabacum HOM05D006082 ORTHO05D007616 9.6e-28 127.9 245 35.1
MBI06_g35217_MAGBIO Magnolia biondii HOM05D006082 ORTHO05D007616 2.1e-27 126.7 194 40.2
Aa31LG5G1260 Aethionema arabicum HOM05D006082 ORTHO05D007616 1.4e-26 124.0 194 37.1
AT4G01510 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 1.8e-26 123.6 169 43.2
BolC9t53049H Brassica oleracea HOM05D006082 ORTHO05D007616 1.8e-26 123.6 223 37.2
BraA09t35778Z Brassica rapa HOM05D006082 ORTHO05D007616 1.8e-26 123.6 222 36.9
FAN10G2982 Fragaria x ananassa HOM05D006082 ORTHO05D007616 7.6e-25 118.2 211 39.3
CANSAT56G0035 Cannabis sativa HOM05D006082 ORTHO05D007616 6.5e-24 115.2 173 44.5
Gohir.D11G106800 Gossypium hirsutum HOM05D006082 ORTHO05D007616 1.9e-23 113.6 188 38.3
Sc24g0001860 Simmondsia chinensis HOM05D006082 ORTHO05D007616 1.9e-23 113.6 170 42.4
Manes.05G014900 Manihot esculenta HOM05D006082 ORTHO05D007616 2.1e-22 110.2 143 41.3
Sed0024729 Sechium edule HOM05D006082 ORTHO05D007616 6.1e-22 108.6 123 49.6
AT1G01020 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 6.7e-21 105.1 177 35.0
AagrBONN_evm.TU.Sc2ySwM_340.22 Anthoceros agrestis HOM05D006082 ORTHO05D007616 8.2e-19 98.2 199 34.2
Potri.002G181700 Populus trichocarpa HOM05D006082 ORTHO05D007616 8.2e-19 98.2 136 44.1
Pp3c10_9330 Physcomitrium patens HOM05D006082 ORTHO05D007616 1.4e-18 97.4 170 37.1
vmacro11192 Vaccinium macrocarpon HOM05D006082 ORTHO05D007616 1.4e-18 97.4 280 31.4
Hma1.2p1_0451F.1_g155800 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 3.1e-18 96.3 98 53.1
SMO367G0224 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 4.5e-17 92.4 169 36.7
Mapoly0050s0018 Marchantia polymorpha HOM05D006082 ORTHO05D007616 1.0e-16 91.3 169 33.1
COL.COLO4_23067 Corchorus olitorius HOM05D006082 ORTHO05D007616 2.9e-16 89.7 113 41.6
GSVIVG01003191001 Vitis vinifera HOM05D006082 ORTHO05D007616 2.5e-15 86.7 113 43.4
EL10Ac9g21719 Beta vulgaris HOM05D006082 ORTHO05D003517 5.5e-15 85.5 135 37.8
GSVIVG01003186001 Vitis vinifera HOM05D006082 ORTHO05D007616 2.7e-14 83.2 77 53.2
SEGI_20928 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 3.0e-13 79.7 119 39.5
SMO230G0051 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 5.1e-13 79.0 167 34.7
CBR_g1036 Chara braunii HOM05D006082 ORTHO05D007616 6.7e-13 78.6 203 29.1
QL03p043604 Quercus lobata HOM05D006082 ORTHO05D007616 8.8e-13 78.2 120 41.7
C05p00940 Brassica napus HOM05D006082 ORTHO05D007616 7.4e-12 75.1 112 40.2
C05p00960 Brassica napus HOM05D006082 ORTHO05D007616 8.2e-11 71.6 103 39.8
DCAR_014739 Daucus carota HOM05D006082 ORTHO05D007616 5.3e-10 68.9 198 27.8
Migut.L00585 Erythranthe guttata HOM05D006082 ORTHO05D007616 5.3e-10 68.9 59 50.8
BolC5t28880H Brassica oleracea HOM05D006082 ORTHO05D007616 6.9e-10 68.6 98 41.8
Hma1.2p1_0262F.1_g105255 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 6.5e-08 62.0 39 66.7
Hma1.2p1_0451F.1_g155790 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 6.5e-08 62.0 39 66.7
BcaC05g24597 Brassica carinata HOM05D006082 ORTHO05D007616 1.9e-07 60.5 148 29.7
MD07G1162600 Malus domestica HOM05D006082 ORTHO05D007616 7.2e-07 58.5 59 54.2


User provided reference genes

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