Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 3.0e-151 538.5 275 100.0
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 1.5e-118 429.9 307 70.0
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 2.8e-80 302.8 304 52.6
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 8.1e-80 301.2 286 54.2
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 2.3e-79 299.7 304 52.0
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 2.3e-79 299.7 304 52.0
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.5e-78 297.0 304 51.6
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 7.6e-78 294.7 304 51.3
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 1.3e-77 293.9 300 51.3
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 1.3e-77 293.9 300 51.3
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 6.4e-77 291.6 304 50.3
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 6.4e-77 291.6 304 50.0
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 1.9e-76 290.0 305 52.5
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 3.2e-76 289.3 304 50.3
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 4.1e-76 288.9 304 50.7
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 7.1e-76 288.1 305 51.1
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 1.6e-75 287.0 304 50.0
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 3.5e-75 285.8 305 50.5
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 6.0e-75 285.0 304 49.0
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 6.0e-75 285.0 305 49.8
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 6.0e-75 285.0 304 50.7
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 7.8e-75 284.6 308 48.7
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 7.8e-75 284.6 303 50.5
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 7.8e-75 284.6 307 48.9
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 1.0e-74 284.3 304 48.7
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 1.0e-74 284.3 305 50.8
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 1.7e-74 283.5 301 50.5
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 2.3e-74 283.1 304 50.0
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 2.3e-74 283.1 304 49.3
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 3.0e-74 282.7 304 49.7
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 6.6e-74 281.6 304 51.3
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 6.6e-74 281.6 304 48.7
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 1.1e-73 280.8 304 49.7
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.1e-73 280.8 289 49.8
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 1.1e-73 280.8 305 49.2
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 1.5e-73 280.4 305 48.5
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 1.9e-73 280.0 304 48.7
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 1.9e-73 280.0 304 48.7
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 1.9e-73 280.0 304 48.7
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.9e-73 280.0 315 47.0
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 2.5e-73 279.6 304 48.0
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 3.3e-73 279.3 304 49.7
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 4.3e-73 278.9 304 48.4
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 4.3e-73 278.9 304 49.3
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 5.6e-73 278.5 296 50.3
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 5.6e-73 278.5 302 48.7
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 7.3e-73 278.1 304 47.7
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 9.6e-73 277.7 304 49.7
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 1.2e-72 277.3 304 49.7
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 2.1e-72 276.6 304 47.4
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 2.1e-72 276.6 305 48.5
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 2.1e-72 276.6 305 48.5
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 6.2e-72 275.0 305 47.9
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 6.2e-72 275.0 304 47.4
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 8.1e-72 274.6 277 52.0
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.1e-71 274.2 304 48.0
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 2.4e-71 273.1 305 48.2
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 3.1e-71 272.7 306 47.7
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 3.1e-71 272.7 306 48.0
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 3.1e-71 272.7 304 49.3
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 5.2e-71 271.9 305 47.2
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 5.2e-71 271.9 305 47.2
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 5.2e-71 271.9 304 48.4
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 6.8e-71 271.6 304 49.3
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 8.9e-71 271.2 277 51.3
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 1.5e-70 270.4 304 46.7
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 1.5e-70 270.4 307 48.5
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 3.4e-70 269.2 305 46.9
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 3.4e-70 269.2 305 46.9
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 4.4e-70 268.9 277 50.9
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 4.4e-70 268.9 304 47.4
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 4.4e-70 268.9 301 48.2
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 4.4e-70 268.9 303 47.9
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 5.8e-70 268.5 306 46.1
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 1.3e-69 267.3 304 47.4
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.3e-69 267.3 313 46.6
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 1.3e-69 267.3 303 47.5
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 3.8e-69 265.8 304 48.0
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 1.4e-68 263.8 305 46.6
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 1.9e-68 263.5 255 52.2
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 2.4e-68 263.1 304 47.0
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 3.2e-68 262.7 310 47.1
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 3.2e-68 262.7 344 43.9
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 1.2e-67 260.8 234 56.4
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 2.7e-67 259.6 303 46.5
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 6.0e-67 258.5 280 48.9
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 3.9e-66 255.8 305 46.6
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 6.6e-66 255.0 347 43.5
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 1.1e-65 254.2 340 44.1
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 1.5e-65 253.8 259 51.4
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 5.6e-65 251.9 331 44.4
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 5.6e-65 251.9 251 51.4
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 7.3e-65 251.5 263 50.2
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 7.6e-62 241.5 378 39.9
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 3.8e-61 239.2 416 36.3
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 6.0e-59 231.9 307 45.0
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 8.7e-58 228.0 409 36.2
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 2.1e-56 223.4 236 51.7
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 2.4e-55 219.9 304 44.4
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 7.1e-52 208.4 288 43.1
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 7.1e-52 208.4 154 65.6
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 2.1e-51 206.8 232 47.0
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 3.0e-50 203.0 301 42.2
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 5.1e-50 202.2 140 66.4
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 1.0e-45 188.0 213 48.4
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 3.8e-45 186.0 221 41.6
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 4.2e-44 182.6 253 41.1
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 1.5e-41 174.1 279 38.0
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 5.7e-41 172.2 212 45.3
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 2.8e-40 169.9 282 35.8
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 4.1e-39 166.0 211 42.2
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 2.1e-35 153.7 219 38.8
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 4.6e-35 152.5 188 42.6
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 1.3e-34 151.0 350 30.9
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 6.5e-21 105.5 128 46.1
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 6.5e-21 105.5 128 46.1
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 2.5e-20 103.6 75 62.7
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 4.2e-20 102.8 61 70.5
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 2.7e-19 100.1 87 59.8
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 6.7e-18 95.5 51 80.4
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 4.4e-17 92.8 118 42.4
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 5.7e-17 92.4 53 73.6
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 7.4e-17 92.0 72 58.3
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 7.4e-17 92.0 119 43.7
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 3.7e-16 89.7 118 41.5
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 6.3e-16 89.0 125 36.8
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.1e-15 88.2 130 39.2
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 1.4e-15 87.8 116 37.9
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 2.4e-15 87.0 118 40.7
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.2e-14 84.7 69 60.9
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 6.5e-13 79.0 118 38.1
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 2.5e-12 77.0 56 62.5
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 1.6e-11 74.3 119 41.2
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 6.1e-11 72.4 99 38.4
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 2.3e-10 70.5 38 71.1
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 3.3e-09 66.6 35 74.3
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.4e-07 61.2 84 42.9
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.4e-07 60.5 57 50.9


User provided reference genes

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