Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 6.6e-96 354.4 225 100.0
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 5.2e-69 265.0 231 77.9
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 6.3e-30 135.2 232 54.7
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 1.3e-11 74.3 62 56.5
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 1.1e-10 71.2 69 49.3
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.5e-10 70.9 70 52.9
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 1.9e-10 70.5 54 59.3
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 2.5e-10 70.1 55 60.0
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 3.2e-10 69.7 59 57.6
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.2e-10 69.3 47 68.1
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 7.2e-10 68.6 46 65.2
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 7.2e-10 68.6 46 65.2
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 9.4e-10 68.2 52 59.6
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 9.4e-10 68.2 52 61.5
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 9.4e-10 68.2 53 60.4
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 9.4e-10 68.2 52 61.5
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 1.2e-09 67.8 49 65.3
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 1.6e-09 67.4 57 56.1
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 2.1e-09 67.0 71 50.7
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 2.1e-09 67.0 46 63.0
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 2.1e-09 67.0 52 59.6
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 2.1e-09 67.0 52 59.6
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 2.7e-09 66.6 52 59.6
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 3.6e-09 66.2 81 45.7
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 8.0e-09 65.1 71 45.1
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 8.0e-09 65.1 68 44.1
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 8.0e-09 65.1 47 66.0
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 8.0e-09 65.1 68 47.1
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 8.0e-09 65.1 81 43.2
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 8.0e-09 65.1 182 28.6
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.0e-08 64.7 65 52.3
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.0e-08 64.7 65 52.3
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 1.0e-08 64.7 46 60.9
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.4e-08 64.3 62 53.2
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 1.4e-08 64.3 51 62.7
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 1.8e-08 63.9 79 41.8
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 1.8e-08 63.9 45 64.4
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.3e-08 63.5 62 53.2
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 3.0e-08 63.2 84 44.0
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.0e-08 63.2 68 54.4
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 4.0e-08 62.8 46 67.4
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 4.0e-08 62.8 54 53.7
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 4.0e-08 62.8 75 46.7
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 5.2e-08 62.4 56 51.8
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 5.2e-08 62.4 64 54.7
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 5.2e-08 62.4 45 62.2
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 5.2e-08 62.4 80 42.5
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 5.2e-08 62.4 54 50.0
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 5.2e-08 62.4 52 59.6
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 6.7e-08 62.0 61 50.8
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 6.7e-08 62.0 44 65.9
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 6.7e-08 62.0 44 65.9
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 6.7e-08 62.0 52 55.8
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 6.7e-08 62.0 65 46.2
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 8.8e-08 61.6 45 64.4
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 8.8e-08 61.6 45 64.4
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 8.8e-08 61.6 61 54.1
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 8.8e-08 61.6 57 54.4
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 8.8e-08 61.6 54 51.9
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 8.8e-08 61.6 52 55.8
Zm00001eb050120 Zea mays HOM05D004032 ORTHO05D004462 8.8e-08 61.6 50 66.0
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 1.1e-07 61.2 59 55.9
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 1.1e-07 61.2 64 50.0
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.1e-07 61.2 45 62.2
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.1e-07 61.2 45 62.2
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.1e-07 61.2 45 62.2
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 1.1e-07 61.2 79 41.8
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.1e-07 61.2 46 63.0
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 1.1e-07 61.2 54 53.7
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 1.5e-07 60.8 46 58.7
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 1.5e-07 60.8 46 58.7
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 1.5e-07 60.8 46 58.7
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 1.5e-07 60.8 46 60.9
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 1.5e-07 60.8 50 58.0
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.5e-07 60.8 42 66.7
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.5e-07 60.8 47 57.4
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 2.0e-07 60.5 58 48.3
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 2.0e-07 60.5 58 48.3
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 2.0e-07 60.5 46 58.7
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.0e-07 60.5 47 59.6
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.6e-07 60.1 45 55.6
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 2.6e-07 60.1 46 58.7
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 2.6e-07 60.1 54 46.3
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.6e-07 60.1 46 60.9
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 2.6e-07 60.1 46 58.7
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 2.6e-07 60.1 74 43.2
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 3.3e-07 59.7 46 56.5
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 3.3e-07 59.7 51 52.9
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 3.3e-07 59.7 59 49.2
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 3.3e-07 59.7 59 49.2
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 3.3e-07 59.7 81 42.0
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 3.3e-07 59.7 58 48.3
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 3.3e-07 59.7 45 60.0
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 4.4e-07 59.3 46 56.5
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 4.4e-07 59.3 46 56.5
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 4.4e-07 59.3 46 56.5
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 4.4e-07 59.3 46 56.5
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 4.4e-07 59.3 46 56.5
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 4.4e-07 59.3 46 56.5
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 4.4e-07 59.3 43 60.5
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 4.4e-07 59.3 38 65.8
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 4.4e-07 59.3 85 42.4
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 4.4e-07 59.3 45 57.8
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 4.4e-07 59.3 46 60.9
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 4.4e-07 59.3 46 56.5
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 4.4e-07 59.3 57 50.9
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 4.4e-07 59.3 45 60.0
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 4.4e-07 59.3 45 62.2
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 4.4e-07 59.3 45 62.2
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 5.7e-07 58.9 68 44.1
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 5.7e-07 58.9 46 56.5
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 7.5e-07 58.5 38 71.1
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 7.5e-07 58.5 53 50.9
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 7.5e-07 58.5 60 46.7
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 7.5e-07 58.5 60 46.7
Potri.018G090000 Populus trichocarpa HOM05D007665 ORTHO05D008293 7.5e-07 58.5 75 42.7
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 7.5e-07 58.5 46 56.5
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 9.7e-07 58.2 45 60.0
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 9.7e-07 58.2 59 49.2
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 1.3e-06 57.8 73 43.8
ATR0111G010 Amborella trichopoda HOM05D001536 ORTHO05D001442 1.3e-06 57.8 38 73.7
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 1.3e-06 57.8 46 56.5
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 1.3e-06 57.8 46 56.5
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 1.3e-06 57.8 46 56.5
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 1.3e-06 57.8 55 45.5
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.3e-06 57.8 68 41.2
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.3e-06 57.8 63 50.8
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.3e-06 57.8 54 57.4
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 1.7e-06 57.4 37 70.3
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.7e-06 57.4 46 54.3
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.7e-06 57.4 46 54.3
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.7e-06 57.4 46 54.3
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 1.7e-06 57.4 45 57.8
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 1.7e-06 57.4 46 56.5
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 2.2e-06 57.0 46 54.3
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 2.2e-06 57.0 46 54.3
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.2e-06 57.0 52 50.0
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 2.2e-06 57.0 43 58.1
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 2.2e-06 57.0 39 69.2
SEGI_03234 Sequoiadendron giganteum HOM05D001536 ORTHO05D001442 2.2e-06 57.0 51 56.9
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 2.2e-06 57.0 52 55.8
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 2.2e-06 57.0 48 56.2
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 2.8e-06 56.6 65 46.2
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 2.8e-06 56.6 60 46.7
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.8e-06 56.6 42 61.9
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.8e-06 56.6 42 61.9
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.8e-06 56.6 80 41.2
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.8e-06 56.6 80 41.2
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 2.8e-06 56.6 42 61.9
SEGI_16187 Sequoiadendron giganteum HOM05D001536 ORTHO05D001442 2.8e-06 56.6 54 59.3
HPP92_018370 Vanilla planifolia HOM05D007665 ORTHO05D008293 2.8e-06 56.6 46 58.7
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 3.7e-06 56.2 38 63.2
Cpa.g.sc13.308 Carica papaya HOM05D001536 ORTHO05D001442 3.7e-06 56.2 40 65.0
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.7e-06 56.2 73 43.8
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 3.7e-06 56.2 37 67.6
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 3.7e-06 56.2 45 55.6
Cc11_g12410 Coffea canephora HOM05D001536 ORTHO05D001442 4.8e-06 55.8 59 47.5
MBI19_g16681_MAGBIO Magnolia biondii HOM05D001536 ORTHO05D001442 4.8e-06 55.8 43 60.5
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 4.8e-06 55.8 43 55.8
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 4.8e-06 55.8 46 54.3
Dinv38761 Davidia involucrata HOM05D001536 ORTHO05D001442 6.3e-06 55.5 47 61.7
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 6.3e-06 55.5 42 61.9
MD13G1066200 Malus domestica HOM05D001536 ORTHO05D001442 8.2e-06 55.1 65 49.2


User provided reference genes

Program Settings