Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 8.1e-208 726.9 374 100.0
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 5.2e-114 415.2 373 56.3
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 6.8e-114 414.8 374 56.7
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 5.8e-113 411.8 376 56.6
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 1.3e-112 410.6 376 56.6
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 4.9e-112 408.7 373 56.8
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 3.2e-111 406.0 373 55.8
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 4.1e-111 405.6 376 55.6
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 7.0e-111 404.8 374 56.7
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 7.0e-111 404.8 373 55.2
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 7.0e-111 404.8 375 56.0
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 1.2e-110 404.1 375 58.1
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 3.9e-109 399.1 373 56.3
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 5.1e-109 398.7 373 55.2
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 1.9e-108 396.7 375 55.2
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 3.3e-108 396.0 373 53.4
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 3.3e-108 396.0 374 53.7
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 4.3e-108 395.6 375 53.9
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 4.3e-108 395.6 373 53.6
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 1.2e-107 394.0 374 54.0
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 2.8e-107 392.9 373 53.4
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 2.8e-107 392.9 373 54.2
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 2.8e-107 392.9 373 53.6
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 3.6e-107 392.5 373 54.4
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 4.7e-107 392.1 377 53.1
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 4.7e-107 392.1 373 55.5
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 6.2e-107 391.7 377 53.6
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 6.2e-107 391.7 373 53.6
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 6.2e-107 391.7 371 55.3
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 1.1e-106 391.0 373 54.4
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 1.4e-106 390.6 373 53.6
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 1.8e-106 390.2 391 52.7
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 2.3e-106 389.8 372 54.8
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 6.8e-106 388.3 385 51.9
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 8.9e-106 387.9 373 54.7
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 1.2e-105 387.5 394 52.0
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 1.2e-105 387.5 373 54.2
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 1.2e-105 387.5 374 52.9
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 1.5e-105 387.1 373 53.9
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 2.0e-105 386.7 373 55.0
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 4.4e-105 385.6 372 53.5
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 7.5e-105 384.8 374 52.9
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 1.7e-104 383.6 377 52.3
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 3.7e-104 382.5 373 53.4
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 4.9e-104 382.1 381 51.4
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 6.4e-104 381.7 373 52.5
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 8.3e-104 381.3 399 51.1
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 2.4e-103 379.8 385 51.7
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 4.1e-103 379.0 379 52.8
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 7.1e-103 378.3 373 52.5
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 9.2e-103 377.9 373 53.4
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 1.2e-102 377.5 375 52.8
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 2.7e-102 376.3 373 52.8
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 2.3e-101 373.2 376 53.2
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 1.1e-100 370.9 375 53.1
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 9.5e-100 367.9 375 51.7
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 2.8e-99 366.3 375 53.3
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 2.8e-99 366.3 375 51.5
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 3.6e-99 365.9 380 52.1
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 6.2e-99 365.2 381 49.3
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 6.2e-99 365.2 381 51.4
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 1.1e-98 364.4 377 50.4
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 1.8e-98 363.6 352 54.8
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 2.4e-98 363.2 373 51.2
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 4.0e-98 362.5 374 51.9
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 1.7e-96 357.1 388 50.0
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 2.2e-96 356.7 373 50.7
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 2.7e-94 349.7 364 53.6
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 4.6e-94 349.0 376 49.7
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 5.6e-92 342.0 385 48.8
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 4.7e-91 339.0 346 51.2
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 1.1e-90 337.8 385 49.4
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 4.0e-90 335.9 373 49.9
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 1.2e-89 334.3 373 46.9
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 5.8e-89 332.0 263 66.5
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 9.9e-89 331.3 373 49.1
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 6.4e-88 328.6 402 49.3
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 8.4e-88 328.2 375 47.2
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 3.2e-87 326.2 434 43.8
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 4.2e-87 325.9 397 46.6
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 7.1e-87 325.1 338 49.1
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 3.3e-84 316.2 375 45.1
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 9.6e-84 314.7 340 47.9
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 1.8e-82 310.5 359 48.7
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 2.4e-82 310.1 375 45.6
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 1.7e-80 303.9 374 45.5
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 3.2e-79 299.7 374 45.5
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 7.9e-78 295.0 364 45.6
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 1.0e-77 294.7 373 44.2
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 1.8e-74 283.9 245 60.4
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 5.3e-74 282.3 310 51.0
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 1.5e-73 280.8 245 59.2
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 9.9e-73 278.1 245 58.4
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 2.2e-72 276.9 245 58.0
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 4.9e-72 275.8 245 59.2
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 6.4e-72 275.4 245 58.4
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 1.9e-68 263.8 374 41.4
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 1.6e-67 260.8 252 53.2
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 4.5e-65 252.7 245 54.3
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 1.4e-63 247.7 299 46.8
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 3.0e-61 240.0 245 51.4
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 5.1e-61 239.2 228 54.8
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 1.1e-58 231.5 313 43.5
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 3.6e-54 216.5 373 38.9
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 4.7e-46 189.5 364 34.9
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 3.7e-43 179.9 319 35.1
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 6.1e-38 162.5 373 31.6
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 7.4e-36 155.6 351 32.5
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 4.1e-34 149.8 379 29.8
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 1.4e-29 134.8 127 50.4
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 1.8e-29 134.4 136 47.8
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 8.8e-29 132.1 134 47.0
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 2.2e-27 127.5 109 58.7
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 1.4e-26 124.8 130 47.7
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 4.1e-26 123.2 129 48.8
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 2.2e-19 100.9 97 54.6
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 4.8e-19 99.8 79 65.8
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 5.4e-18 96.3 101 54.5
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 9.1e-18 95.5 101 50.5
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 5.2e-13 79.7 111 41.4
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 3.4e-12 77.0 94 41.5
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 3.2e-10 70.5 52 57.7
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 4.1e-10 70.1 101 38.6
THA.LOC104813028 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 9.5e-07 58.9 120 35.8
PRCOL_00004000 Prasinoderma coloniale HOM05D002345 ORTHO05D002460 1.2e-06 58.5 124 35.5
SMO234G0002 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 1.2e-06 58.5 139 30.2
Lalb_Chr01g0020941 Lupinus albus HOM05D006451 ORTHO05D007680 1.6e-06 58.2 152 29.6
BcaB05g23846 Brassica carinata HOM05D001916 ORTHO05D003272 3.6e-06 57.0 116 35.3
Cc02_g02210 Coffea canephora HOM05D001916 ORTHO05D003272 3.6e-06 57.0 116 32.8
Eucgr.A02714 Eucalyptus grandis HOM05D001916 ORTHO05D003272 3.6e-06 57.0 115 33.0
Glyma.02G004400 Glycine max HOM05D006451 ORTHO05D007680 4.7e-06 56.6 160 30.0
Nitab4.5_0000472g0280 Nicotiana tabacum HOM05D001916 ORTHO05D003272 4.7e-06 56.6 115 35.7
Nitab4.5_0007653g0010 Nicotiana tabacum HOM05D001916 ORTHO05D003272 4.7e-06 56.6 115 35.7
Glyma.10G003800 Glycine max HOM05D006451 ORTHO05D007680 6.1e-06 56.2 159 29.6
Lj6g0024617 Lotus japonicus HOM05D006451 ORTHO05D007680 6.1e-06 56.2 160 29.4
MD01G1210400 Malus domestica HOM05D001916 ORTHO05D003272 8.0e-06 55.8 115 33.9


User provided reference genes

Program Settings