Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb057170 Zea mays HOM05D003255 ORTHO05D003705 4.9e-202 707.6 364 100.0
Os03g0748300 Oryza sativa ssp. japonica HOM05D003255 ORTHO05D003705 8.4e-93 344.7 357 58.0
Nn7g35823 Nelumbo nucifera HOM05D003255 ORTHO05D003705 2.5e-60 236.9 282 46.8
Duzib128G0833 Durio zibethinus HOM05D003255 ORTHO05D003705 2.6e-57 226.9 288 44.8
Gohir.D11G268800 Gossypium hirsutum HOM05D003255 ORTHO05D003705 2.6e-57 226.9 279 47.0
Thecc.05G293800 Theobroma cacao HOM05D003255 ORTHO05D003705 2.6e-57 226.9 286 46.2
TAR623G0562 Trochodendron aralioides HOM05D003255 ORTHO05D003705 3.3e-57 226.5 286 46.5
QL07p020062 Quercus lobata HOM05D003255 ORTHO05D003705 4.4e-57 226.1 287 46.0
QL07p019728 Quercus lobata HOM05D003255 ORTHO05D003705 5.7e-57 225.7 284 46.1
Gorai.007G288600 Gossypium raimondii HOM05D003255 ORTHO05D003705 7.4e-57 225.3 279 46.6
Gohir.A11G258700 Gossypium hirsutum HOM05D003255 ORTHO05D003705 9.7e-57 224.9 278 46.8
Rhsim03G0001300 Rhododendron simsii HOM05D003255 ORTHO05D003705 1.7e-56 224.2 293 46.1
Peaxi162Scf00076g01038 Petunia axillaris HOM05D003255 ORTHO05D003705 1.8e-55 220.7 292 42.1
PGSC0003DMG400008640 Solanum tuberosum HOM05D003255 ORTHO05D003705 3.1e-55 219.9 287 44.6
Haze_19413 Corylus avellana HOM05D003255 ORTHO05D003705 4.1e-55 219.5 288 44.8
Sopen03g015020 Solanum pennellii HOM05D003255 ORTHO05D003705 9.1e-55 218.4 297 43.4
Solyc03g062710.4 Solanum lycopersicum HOM05D003255 ORTHO05D003705 1.2e-54 218.0 297 43.4
Actinidia30556 Actinidia chinensis HOM05D003255 ORTHO05D003705 2.0e-54 217.2 294 46.3
Aqoxy2G00586 Aquilegia oxysepala HOM05D003255 ORTHO05D003705 3.5e-54 216.5 289 45.3
DCAR_013690 Daucus carota HOM05D003255 ORTHO05D003705 3.5e-54 216.5 284 43.3
Nitab4.5_0002825g0020 Nicotiana tabacum HOM05D003255 ORTHO05D003705 3.5e-54 216.5 286 43.0
Dinv14583 Davidia involucrata HOM05D003255 ORTHO05D003705 5.9e-54 215.7 295 43.4
CAN.G317.14 Capsicum annuum HOM05D003255 ORTHO05D003705 7.7e-54 215.3 287 43.2
Lsat_1_v5_gn_6_36901 Lactuca sativa HOM05D003255 ORTHO05D003705 1.7e-53 214.2 296 44.3
HanXRQChr13g0398041 Helianthus annuus HOM05D003255 ORTHO05D003705 3.8e-53 213.0 319 41.7
CiPaw.10G000700 Carya illinoinensis HOM05D003255 ORTHO05D003705 8.5e-53 211.8 295 42.7
Sabra19G0041900 Salix brachista HOM05D003255 ORTHO05D003705 9.4e-52 208.4 311 41.5
vmacro12570 Vaccinium macrocarpon HOM05D003255 ORTHO05D003705 1.2e-51 208.0 303 43.6
Oeu060006.1 Olea europaea HOM05D003255 ORTHO05D003705 3.6e-51 206.5 293 41.6
ECA233G3001 Erigeron canadensis HOM05D000074 ORTHO05D000696 6.1e-51 205.7 316 41.1
Potri.019G034000 Populus trichocarpa HOM05D003255 ORTHO05D003705 8.0e-51 205.3 288 42.0
PSO339G1718 Papaver somniferum HOM05D003255 ORTHO05D003705 1.8e-50 204.1 292 43.5
CANSAT56G4486 Cannabis sativa HOM05D003255 ORTHO05D003705 3.0e-50 203.4 281 42.7
FvH4_1g28070 Fragaria vesca HOM05D003255 ORTHO05D003705 6.8e-50 202.2 300 42.0
FAN19G2054 Fragaria x ananassa HOM05D003255 ORTHO05D003705 8.8e-50 201.8 300 41.7
Lalb_Chr06g0173971 Lupinus albus HOM05D003255 ORTHO05D003705 8.8e-50 201.8 283 43.1
Prupe.7G003600 Prunus persica HOM05D003255 ORTHO05D003705 2.0e-49 200.7 294 42.2
PGR142G1693 Punica granatum HOM05D003255 ORTHO05D003705 4.4e-49 199.5 290 42.8
AUR62032061 Chenopodium quinoa HOM05D003255 ORTHO05D003705 5.7e-49 199.1 296 41.6
Eucgr.K01496 Eucalyptus grandis HOM05D003255 ORTHO05D003705 7.5e-49 198.7 288 44.8
MD14G1002400 Malus domestica HOM05D003255 ORTHO05D003705 7.5e-49 198.7 305 40.3
TWI60G0442 Tripterygium wilfordii HOM05D003255 ORTHO05D003705 7.5e-49 198.7 291 41.6
Nitab4.5_0000001g0080 Nicotiana tabacum HOM05D003255 ORTHO05D003705 9.8e-49 198.4 311 39.9
Lj2C357T24 Lonicera japonica HOM05D003255 ORTHO05D003705 1.7e-48 197.6 294 41.2
Hma1.2p1_0376F.1_g139160 Hydrangea macrophylla HOM05D003255 ORTHO05D003705 2.8e-48 196.8 301 40.9
Ca_21767_v3 Cicer arietinum L. HOM05D000813 ORTHO05D004282 4.8e-48 196.1 284 41.5
Ciclev10020539m.g Citrus clementina HOM05D003255 ORTHO05D003705 4.8e-48 196.1 293 40.6
Psat0s2522g0120 Pisum sativum HOM05D003255 ORTHO05D003705 5.4e-47 192.6 280 39.6
Medtr6g032880 Medicago truncatula HOM05D003255 ORTHO05D003705 7.0e-47 192.2 284 43.3
Manes.09G142000 Manihot esculenta HOM05D003255 ORTHO05D003705 9.1e-47 191.8 288 42.4
CSS0017996 Camellia sinensis var. sinensis HOM05D003255 ORTHO05D003705 1.6e-46 191.0 290 40.7
TPR.G34627 Trifolium pratense HOM05D003255 ORTHO05D003705 2.0e-46 190.7 282 41.1
GSVIVG01033392001 Vitis vinifera HOM05D003255 ORTHO05D003705 2.0e-46 190.7 257 44.0
EL10Ac3g06815 Beta vulgaris HOM05D003255 ORTHO05D003705 3.5e-46 189.9 300 40.3
ClCG04G005290 Citrullus lanatus HOM05D003255 ORTHO05D003705 3.5e-46 189.9 337 38.3
MELO3C008799.2 Cucumis melo HOM05D003255 ORTHO05D003705 1.0e-45 188.3 277 41.2
VMungo0464G0063 Vigna mungo HOM05D003255 ORTHO05D003705 1.0e-45 188.3 282 40.1
ATR0697G052 Amborella trichopoda HOM05D003255 ORTHO05D003705 1.7e-45 187.6 290 42.1
CsaV3_4G013300 Cucumis sativus L. HOM05D003255 ORTHO05D003705 2.2e-45 187.2 332 38.3
Sed0011624 Sechium edule HOM05D003255 ORTHO05D003705 2.9e-45 186.8 282 42.2
Ah.13g075320 Amaranthus hybridus HOM05D003255 ORTHO05D003705 6.5e-45 185.7 284 40.5
Glyma.16G153000 Glycine max HOM05D003255 ORTHO05D003705 1.1e-44 184.9 280 40.4
unitig_37.g12787 Utricularia gibba HOM05D003255 ORTHO05D003705 1.1e-44 184.9 283 41.7
CDE02G4790 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 1.9e-44 184.1 271 42.1
Cpa.g.sc51.108 Carica papaya HOM05D003255 ORTHO05D003705 5.5e-44 182.6 282 40.1
MSTRG.19937 Avicennia marina HOM05D003255 ORTHO05D003705 7.2e-44 182.2 283 39.9
RcHm_v2.0_Chr3g0497181 Rosa chinensis HOM05D003255 ORTHO05D003705 3.6e-43 179.9 300 40.0
Phvul.004G079500 Phaseolus vulgaris HOM05D003255 ORTHO05D003705 8.0e-43 178.7 277 39.4
Lj2g0018565 Lotus japonicus HOM05D003255 ORTHO05D003705 1.4e-42 177.9 283 39.9
Cc06_g22880 Coffea canephora HOM05D003255 ORTHO05D003705 1.8e-42 177.6 250 41.6
AUR62032686 Chenopodium quinoa HOM05D003255 ORTHO05D003705 2.0e-41 174.1 284 39.4
Actinidia22086 Actinidia chinensis HOM05D003255 ORTHO05D003705 1.6e-38 164.5 209 47.4
THA.LOC104816712 Tarenaya hassleriana HOM05D003255 ORTHO05D003705 1.3e-37 161.4 296 37.2
THA.LOC104805764 Tarenaya hassleriana HOM05D003255 ORTHO05D003705 1.7e-37 161.0 298 37.2
THA.LOC104807097 Tarenaya hassleriana HOM05D003255 ORTHO05D003705 1.7e-37 161.0 298 37.2
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 1.5e-36 157.9 293 37.9
Migut.J01893 Erythranthe guttata HOM05D003255 ORTHO05D003705 2.5e-36 157.1 317 37.9
arahy.Tifrunner.gnm1.ann1.6P03AF Arachis hypogaea HOM05D003255 ORTHO05D003705 4.2e-36 156.4 293 37.9
FAN26G2862 Fragaria x ananassa HOM05D003255 ORTHO05D003705 5.5e-36 156.0 223 42.6
Atru.chr2.1364 Acer truncatum HOM05D003255 ORTHO05D003705 7.2e-36 155.6 253 39.5
Sp1g41050 Schrenkiella parvula HOM05D003255 ORTHO05D003705 2.8e-35 153.7 276 37.3
CARHR045040 Cardamine hirsuta HOM05D003255 ORTHO05D003705 1.8e-34 151.0 297 36.0
Aa31LG10G1180 Aethionema arabicum HOM05D003255 ORTHO05D003705 2.0e-33 147.5 300 34.0
AL1G63430 Arabidopsis lyrata HOM05D003255 ORTHO05D003705 1.3e-32 144.8 296 34.1
AT1G55370 Arabidopsis thaliana HOM05D003255 ORTHO05D003705 1.3e-32 144.8 301 33.2
A06p00210 Brassica napus HOM05D003255 ORTHO05D003705 1.3e-32 144.8 293 35.8
BraA06t23237Z Brassica rapa HOM05D003255 ORTHO05D003705 1.3e-32 144.8 293 35.8
Thhalv10011597m.g Eutrema salsugineum HOM05D003255 ORTHO05D003705 1.7e-32 144.4 285 35.8
Carub.0001s4389 Capsella rubella HOM05D003255 ORTHO05D003705 1.1e-31 141.7 296 34.5
Hma1.2p1_2695F.1_g327030 Hydrangea macrophylla HOM05D003255 ORTHO05D003705 2.4e-31 140.6 251 38.2
Cfa016436 Carpinus fangiana HOM05D003255 ORTHO05D003705 3.9e-29 133.3 153 46.4
SEGI_06106 Sequoiadendron giganteum HOM05D003255 ORTHO05D003705 4.7e-27 126.3 303 31.7
BolC6t36111H Brassica oleracea HOM05D003255 ORTHO05D003705 9.8e-25 118.6 292 32.2
BcaC08g43621 Brassica carinata HOM05D003255 ORTHO05D003705 2.2e-24 117.5 292 32.2
C06p10350 Brassica napus HOM05D003255 ORTHO05D003705 2.2e-24 117.5 292 32.2
FAN23G0456 Fragaria x ananassa HOM05D003255 ORTHO05D003705 3.7e-24 116.7 139 47.5
Cfa008478 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.4e-23 114.8 233 35.6
Rhsim09G0004800 Rhododendron simsii HOM05D003255 ORTHO05D003705 1.7e-21 107.8 95 53.7
Haze_11188 Corylus avellana HOM05D003255 ORTHO05D003705 7.3e-20 102.4 149 41.6
Haze_11191 Corylus avellana HOM05D003255 ORTHO05D003705 1.4e-18 98.2 81 58.0
COL.COLO4_13608 Corchorus olitorius HOM05D003255 ORTHO05D003705 2.3e-18 97.4 100 53.0
Glyma.02G071800 Glycine max HOM05D003255 ORTHO05D003705 2.3e-18 97.4 188 35.6
Haze_11184 Corylus avellana HOM05D003255 ORTHO05D003705 4.0e-18 96.7 81 58.0
Hund19240 Selenicereus undatus HOM05D003255 ORTHO05D003705 3.4e-17 93.6 150 40.0
Mapoly0135s0022 Marchantia polymorpha HOM05D003255 ORTHO05D003705 4.4e-17 93.2 331 29.3
ATR0697G035 Amborella trichopoda HOM05D003255 ORTHO05D003705 8.3e-16 89.0 269 29.7
FvH4_4g18560 Fragaria vesca HOM05D003255 ORTHO05D003705 5.4e-15 86.3 85 48.2
FAN12G2339 Fragaria x ananassa HOM05D003255 ORTHO05D003705 1.0e-13 82.0 85 47.1
AagrBONN_evm.TU.Sc2ySwM_368.2197 Anthoceros agrestis HOM05D003255 ORTHO05D003705 2.3e-13 80.9 243 30.0
PSO384G0936 Papaver somniferum HOM05D003255 ORTHO05D003705 1.1e-12 78.6 285 27.7
Os03g0158300 Oryza sativa ssp. japonica HOM05D003255 ORTHO05D003705 1.5e-12 78.2 301 27.2
PSO339G4182 Papaver somniferum HOM05D003255 ORTHO05D003705 1.9e-12 77.8 285 28.1
Zm00001eb403240 Zea mays HOM05D003255 ORTHO05D003705 2.5e-12 77.4 297 30.0
Zm00001eb004410 Zea mays HOM05D003255 ORTHO05D003705 4.3e-12 76.6 206 33.5
TAR623G0824 Trochodendron aralioides HOM05D003255 ORTHO05D003705 2.1e-11 74.3 290 28.3
CDE05G3425 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 4.7e-11 73.2 200 29.0
GSVIVG01033393001 Vitis vinifera HOM05D003255 ORTHO05D003705 6.2e-11 72.8 262 28.2
Nn7g35822 Nelumbo nucifera HOM05D003255 ORTHO05D003705 8.9e-10 68.9 264 26.5
CDE01G0333 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 1.2e-09 68.6 181 31.5
SMO275G0062 Selaginella moellendorffii HOM05D003255 ORTHO05D003705 2.0e-09 67.8 308 25.6
Actinidia30555 Actinidia chinensis HOM05D003255 ORTHO05D003705 5.8e-09 66.2 199 29.6
Pp3c25_5270 Physcomitrium patens HOM05D003255 ORTHO05D003705 1.3e-08 65.1 256 26.6
CARHR045100 Cardamine hirsuta HOM05D003255 ORTHO05D003705 3.7e-08 63.5 109 33.9
Lj1g0023757 Lotus japonicus HOM05D003255 ORTHO05D003705 6.4e-08 62.8 282 26.6
Gohir.A11G258800 Gossypium hirsutum HOM05D003255 ORTHO05D003705 1.9e-07 61.2 204 27.0
Ah.04g153230 Amaranthus hybridus HOM05D003255 ORTHO05D003705 3.2e-07 60.5 228 28.5
vmacro12569 Vaccinium macrocarpon HOM05D003255 ORTHO05D003705 3.2e-07 60.5 207 27.5
AagrBONN_evm.TU.Sc2ySwM_368.2200 Anthoceros agrestis HOM05D003255 ORTHO05D003705 4.1e-07 60.1 220 30.0
FAN02G2038 Fragaria x ananassa HOM05D003255 ORTHO05D006458 4.1e-07 60.1 236 28.0
FAN09G1185 Fragaria x ananassa HOM05D003255 ORTHO05D003705 5.4e-07 59.7 229 28.4
Cc06_g22890 Coffea canephora HOM05D003255 ORTHO05D003705 1.6e-06 58.2 319 25.1
Lj1A1137T81 Lonicera japonica HOM05D003255 ORTHO05D003705 2.1e-06 57.8 232 29.3
CANSAT78G2239 Cannabis sativa HOM05D003255 ORTHO05D003705 3.5e-06 57.0 215 27.4
FAN17G0654 Fragaria x ananassa HOM05D003255 ORTHO05D003705 3.5e-06 57.0 91 39.6
Sed0025392 Sechium edule HOM05D003255 ORTHO05D003705 3.5e-06 57.0 205 27.8


User provided reference genes

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