Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 3.0e-243 844.7 422 100.0
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 1.9e-197 692.6 386 87.6
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 7.1e-152 541.2 380 68.4
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 6.0e-151 538.1 380 68.4
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 3.0e-150 535.8 380 67.4
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 3.9e-150 535.4 412 65.3
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 2.5e-149 532.7 410 64.9
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 2.5e-149 532.7 387 66.9
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 1.3e-148 530.4 421 63.4
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 2.1e-148 529.6 392 66.3
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 2.8e-148 529.3 382 67.3
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 3.7e-148 528.9 385 67.5
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 3.7e-148 528.9 421 63.4
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 6.2e-148 528.1 398 65.8
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 8.1e-148 527.7 380 68.4
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 1.4e-147 526.9 421 63.2
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 3.1e-147 525.8 383 66.3
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 3.1e-147 525.8 411 65.5
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 3.1e-147 525.8 380 66.6
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 3.1e-147 525.8 409 64.8
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 4.0e-147 525.4 383 66.6
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 4.0e-147 525.4 409 63.3
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 1.2e-146 523.9 381 66.9
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 1.2e-146 523.9 385 66.2
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 1.2e-146 523.9 389 66.1
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 1.5e-146 523.5 407 61.9
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 2.0e-146 523.1 381 66.7
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 2.0e-146 523.1 385 65.5
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 2.6e-146 522.7 419 64.2
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 5.8e-146 521.5 381 66.1
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 5.8e-146 521.5 384 66.7
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 1.3e-145 520.4 417 61.9
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 1.3e-145 520.4 380 65.5
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 2.2e-145 519.6 390 64.1
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 2.9e-145 519.2 407 63.1
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 2.9e-145 519.2 385 64.9
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 4.9e-145 518.5 390 65.4
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 6.4e-145 518.1 383 66.1
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 8.4e-145 517.7 383 66.1
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 1.9e-144 516.5 384 66.1
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 1.9e-144 516.5 386 64.5
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 5.5e-144 515.0 383 64.5
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 5.5e-144 515.0 386 65.0
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 1.2e-143 513.8 387 65.1
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 1.2e-143 513.8 387 65.1
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 1.2e-143 513.8 388 65.5
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 1.6e-143 513.5 387 64.1
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 1.6e-143 513.5 391 64.5
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 2.1e-143 513.1 424 62.5
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 3.5e-143 512.3 411 63.5
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 4.6e-143 511.9 386 63.2
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 4.6e-143 511.9 395 63.8
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 7.9e-143 511.1 392 64.0
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 1.3e-142 510.4 381 66.4
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 2.3e-142 509.6 389 64.5
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 6.7e-142 508.1 380 66.1
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.1e-141 507.3 381 65.4
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 5.6e-141 505.0 386 64.5
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 9.6e-141 504.2 406 62.8
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 1.6e-140 503.4 423 61.0
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 1.6e-140 503.4 416 60.6
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 2.1e-140 503.1 416 60.6
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 3.7e-140 502.3 421 59.9
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.7e-140 502.3 380 63.9
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 4.8e-140 501.9 422 59.5
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 1.4e-139 500.4 405 62.5
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 2.4e-139 499.6 420 61.0
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 4.0e-139 498.8 376 63.6
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 9.0e-139 497.7 405 61.0
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 9.0e-139 497.7 398 62.6
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 5.8e-138 495.0 394 62.7
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 1.3e-137 493.8 352 67.9
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.3e-137 493.8 398 62.8
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 2.2e-137 493.0 448 57.1
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 8.4e-137 491.1 380 64.7
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 1.9e-136 490.0 386 63.7
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 4.2e-136 488.8 367 65.4
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 9.3e-136 487.6 413 61.5
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 9.3e-136 487.6 336 69.6
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 1.0e-134 484.2 409 59.4
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 2.3e-134 483.0 379 62.3
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 4.3e-133 478.8 423 59.1
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 1.3e-132 477.2 362 63.8
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 4.8e-132 475.3 386 60.6
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 1.1e-131 474.2 382 62.3
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 7.6e-130 468.0 392 61.0
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 1.0e-129 467.6 374 62.6
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 5.5e-128 461.8 335 65.4
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 6.9e-123 444.9 399 57.1
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 9.1e-123 444.5 398 57.0
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 2.9e-121 439.5 346 62.7
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 4.7e-119 432.2 348 62.1
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.4e-112 410.6 295 65.8
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 1.2e-111 407.5 386 54.4
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.6e-109 399.8 372 54.8
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 7.4e-109 398.3 294 65.0
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 9.7e-109 397.9 393 55.0
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 1.6e-106 390.6 409 52.1
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 5.9e-106 388.7 382 51.0
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 1.1e-104 384.4 388 50.3
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 4.7e-103 379.0 301 64.1
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 9.4e-96 354.8 303 60.7
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 1.2e-85 321.2 307 57.7
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 7.5e-85 318.5 372 46.5
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 3.4e-77 293.1 241 60.6
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 8.3e-76 288.5 276 53.3
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 1.6e-71 274.2 352 43.5
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 5.2e-70 269.2 179 70.9
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 2.6e-69 266.9 245 55.1
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 4.1e-67 259.6 450 38.9
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.2e-66 258.1 167 73.7
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.2e-66 258.1 167 73.7
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.9e-56 224.2 146 74.7
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 3.8e-44 183.3 127 65.4
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 1.6e-42 177.9 291 36.8
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.4e-38 164.9 99 76.8
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 2.4e-38 164.1 127 64.6
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 8.4e-36 155.6 195 46.2
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.2e-35 153.7 121 62.8
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 3.0e-33 147.1 83 75.9
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 3.0e-33 147.1 99 65.7
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 8.1e-31 139.0 101 65.3
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 9.9e-29 132.1 89 66.3
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 1.3e-28 131.7 115 57.4
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 1.8e-25 121.3 80 65.0
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 1.4e-22 111.7 167 46.7
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 2.0e-13 81.3 219 32.9
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 6.5e-12 76.3 66 54.5
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 2.2e-07 61.2 210 25.2
Aqoxy2G03169 Aquilegia oxysepala HOM05D002999 ORTHO05D003137 1.1e-06 58.9 248 25.8
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 1.8e-06 58.2 239 27.2
Hund05388 Selenicereus undatus HOM05D002999 ORTHO05D003137 1.8e-06 58.2 187 26.2
AUR62018095 Chenopodium quinoa HOM05D002999 ORTHO05D003137 3.1e-06 57.4 270 22.2
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 3.1e-06 57.4 253 22.9
THA.LOC104801205 Tarenaya hassleriana HOM05D002999 ORTHO05D003137 6.9e-06 56.2 240 25.4
Cre17.g713900 Chlamydomonas reinhardtii HOM05D004736 ORTHO05D006424 9.1e-06 55.8 161 27.3


User provided reference genes

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