Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 5.8e-71 270.8 136 100.0
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 7.1e-69 263.8 136 97.8
Zm00001eb256610 Zea mays HOM05D004166 ORTHO05D004992 1.2e-68 263.1 136 97.1
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 7.2e-21 104.4 65 81.5
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 1.2e-20 103.6 65 81.5
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 2.7e-20 102.4 63 82.5
Zm00001eb076920 Zea mays HOM05D004166 ORTHO05D004992 6.1e-20 101.3 62 87.1
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 1.1e-16 90.5 65 70.8
Zm00001eb124050 Zea mays HOM05D000586 ORTHO05D443244 2.4e-16 89.4 68 77.9
Zm00001eb114460 Zea mays HOM05D004166 ORTHO05D004992 4.1e-16 88.6 53 79.2
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 3.7e-09 65.5 61 57.4
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 4.8e-09 65.1 57 61.4
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 6.3e-09 64.7 64 53.1
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 8.2e-09 64.3 68 54.4
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 8.2e-09 64.3 61 57.4
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 1.4e-08 63.5 68 50.0
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 1.4e-08 63.5 61 54.1
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 1.4e-08 63.5 58 56.9
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 1.8e-08 63.2 58 58.6
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 2.4e-08 62.8 62 54.8
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 2.4e-08 62.8 58 55.2
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 3.1e-08 62.4 58 55.2
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 4.1e-08 62.0 61 55.7
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 5.3e-08 61.6 59 52.5
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 5.3e-08 61.6 58 58.6
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 5.3e-08 61.6 59 55.9
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 7.0e-08 61.2 58 58.6
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 7.0e-08 61.2 58 58.6
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 7.0e-08 61.2 58 58.6
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 1.2e-07 60.5 58 58.6
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 1.2e-07 60.5 58 53.4
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.2e-07 60.5 61 52.5
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 1.2e-07 60.5 59 55.9
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 1.2e-07 60.5 58 56.9
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 1.5e-07 60.1 61 55.7
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.5e-07 60.1 58 51.7
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 2.0e-07 59.7 61 54.1
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 2.6e-07 59.3 58 53.4
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 2.6e-07 59.3 64 50.0
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 2.6e-07 59.3 58 56.9
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 2.6e-07 59.3 58 55.2
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.4e-07 58.9 57 57.9
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.4e-07 58.9 57 57.9
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 3.4e-07 58.9 58 55.2
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 4.5e-07 58.5 61 52.5
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 4.5e-07 58.5 57 56.1
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 5.9e-07 58.2 58 56.9
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 5.9e-07 58.2 61 54.1
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 7.7e-07 57.8 61 47.5
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 7.7e-07 57.8 61 47.5
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 7.7e-07 57.8 68 50.0
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 7.7e-07 57.8 57 56.1
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 7.7e-07 57.8 58 56.9
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 7.7e-07 57.8 61 49.2
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 7.7e-07 57.8 61 57.4
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 1.0e-06 57.4 61 50.8
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 1.0e-06 57.4 58 48.3
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.0e-06 57.4 58 56.9
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 1.0e-06 57.4 61 54.1
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 1.0e-06 57.4 58 58.6
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 1.0e-06 57.4 58 56.9
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 1.0e-06 57.4 57 54.4
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 1.3e-06 57.0 58 53.4
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.3e-06 57.0 61 52.5
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.3e-06 57.0 61 52.5
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.3e-06 57.0 58 56.9
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.3e-06 57.0 63 50.8
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.3e-06 57.0 58 53.4
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.3e-06 57.0 56 57.1
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.3e-06 57.0 57 54.4
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 1.7e-06 56.6 58 53.4
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 1.7e-06 56.6 58 53.4
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 1.7e-06 56.6 58 53.4
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.7e-06 56.6 57 50.9
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 1.7e-06 56.6 59 50.8
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.2e-06 56.2 61 52.5
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.2e-06 56.2 61 52.5
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.2e-06 56.2 64 48.4
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 2.9e-06 55.8 58 53.4
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 2.9e-06 55.8 57 50.9
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 2.9e-06 55.8 61 49.2
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 2.9e-06 55.8 58 53.4
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 2.9e-06 55.8 58 55.2
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 2.9e-06 55.8 57 50.9
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 2.9e-06 55.8 69 44.9
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 3.8e-06 55.5 58 51.7
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 3.8e-06 55.5 58 53.4
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 3.8e-06 55.5 61 50.8
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 3.8e-06 55.5 57 47.4
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.8e-06 55.5 57 52.6
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 3.8e-06 55.5 57 52.6
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 3.8e-06 55.5 58 51.7
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 5.0e-06 55.1 58 51.7
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 5.0e-06 55.1 58 51.7
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 5.0e-06 55.1 58 50.0
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 5.0e-06 55.1 58 53.4
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 5.0e-06 55.1 58 53.4
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 5.0e-06 55.1 58 53.4
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 6.5e-06 54.7 58 51.7
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 6.5e-06 54.7 54 57.4
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 6.5e-06 54.7 58 51.7
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 6.5e-06 54.7 58 51.7
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 8.5e-06 54.3 58 51.7
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 8.5e-06 54.3 46 63.0
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 8.5e-06 54.3 57 47.4


User provided reference genes

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