Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb056210 Zea mays HOM05D007571 ORTHO05D009439 5.5e-60 234.2 124 100.0
Os03g0731100 Oryza sativa ssp. japonica HOM05D007571 ORTHO05D009439 1.2e-35 153.3 126 73.0
AUR62030860 Chenopodium quinoa HOM05D007571 ORTHO05D009439 4.0e-18 95.1 73 65.8
CDE04G1832 Ceratophyllum demersum HOM05D007571 ORTHO05D009439 8.8e-18 94.0 91 57.1
CAN.G1433.5 Capsicum annuum HOM05D007571 ORTHO05D009439 2.0e-17 92.8 114 50.9
Oeu024805.1 Olea europaea HOM05D007571 ORTHO05D009439 3.4e-17 92.0 87 59.8
Thecc.02G118900 Theobroma cacao HOM05D007571 ORTHO05D009439 5.7e-17 91.3 115 49.6
Ah.01g007010 Amaranthus hybridus HOM05D007571 ORTHO05D009439 7.5e-17 90.9 93 54.8
MBI16_g39621_MAGBIO Magnolia biondii HOM05D007571 ORTHO05D009439 7.5e-17 90.9 124 51.6
MBI16_g43666_MAGBIO Magnolia biondii HOM05D007571 ORTHO05D009439 7.5e-17 90.9 124 51.6
Hund06510 Selenicereus undatus HOM05D007571 ORTHO05D009439 9.8e-17 90.5 102 52.9
arahy.Tifrunner.gnm1.ann1.A1M8SQ Arachis hypogaea HOM05D007571 ORTHO05D009439 1.3e-16 90.1 87 55.2
arahy.Tifrunner.gnm1.ann1.I40GDJ Arachis hypogaea HOM05D007571 ORTHO05D009439 1.3e-16 90.1 87 55.2
Ciclev10029547m.g Citrus clementina HOM05D007571 ORTHO05D009439 1.3e-16 90.1 112 49.1
EL10Ac9g22184 Beta vulgaris HOM05D007571 ORTHO05D009439 2.2e-16 89.4 90 54.4
Sc05g0005590 Simmondsia chinensis HOM05D007571 ORTHO05D009439 2.8e-16 89.0 110 50.0
AT1G49975 Arabidopsis thaliana HOM05D007571 ORTHO05D009439 4.8e-16 88.2 107 52.3
Carub.0001s3916 Capsella rubella HOM05D007571 ORTHO05D009439 4.8e-16 88.2 97 54.6
Cc02_g09420 Coffea canephora HOM05D007571 ORTHO05D009439 4.8e-16 88.2 81 59.3
PGR042G0328 Punica granatum HOM05D007571 ORTHO05D009439 6.3e-16 87.8 87 55.2
TPR.G21146 Trifolium pratense HOM05D007571 ORTHO05D009439 6.3e-16 87.8 101 53.5
TWI59G0511 Tripterygium wilfordii HOM05D007571 ORTHO05D009439 6.3e-16 87.8 99 52.5
AL1G57530 Arabidopsis lyrata HOM05D007571 ORTHO05D009439 8.3e-16 87.4 97 54.6
Potri.001G292000 Populus trichocarpa HOM05D007571 ORTHO05D009439 1.1e-15 87.0 111 46.8
Aqoxy6G02559 Aquilegia oxysepala HOM05D007571 ORTHO05D009439 1.4e-15 86.7 92 55.4
BcaC08g43171 Brassica carinata HOM05D007571 ORTHO05D009439 2.4e-15 85.9 64 70.3
A06p03470 Brassica napus HOM05D007571 ORTHO05D009439 2.4e-15 85.9 64 70.3
C06p04720 Brassica napus HOM05D007571 ORTHO05D009439 2.4e-15 85.9 64 70.3
BraA06t23555Z Brassica rapa HOM05D007571 ORTHO05D009439 2.4e-15 85.9 64 70.3
COL.COLO4_32496 Corchorus olitorius HOM05D007571 ORTHO05D009439 2.4e-15 85.9 122 44.3
Thhalv10011862m.g Eutrema salsugineum HOM05D007571 ORTHO05D009439 2.4e-15 85.9 102 50.0
Eucgr.G01203 Eucalyptus grandis HOM05D007571 ORTHO05D009439 3.1e-15 85.5 88 56.8
SalBow6G2573 Salvia bowleyana HOM05D007571 ORTHO05D009439 3.1e-15 85.5 70 61.4
Atru.chr5.2324 Acer truncatum HOM05D007571 ORTHO05D009439 4.1e-15 85.1 87 57.5
Solyc05g150152.1 Solanum lycopersicum HOM05D007571 ORTHO05D009439 4.1e-15 85.1 81 59.3
Sopen05g033610 Solanum pennellii HOM05D007571 ORTHO05D009439 4.1e-15 85.1 81 59.3
TAR628G1270 Trochodendron aralioides HOM05D007571 ORTHO05D009439 4.1e-15 85.1 92 56.5
MSTRG.417 Avicennia marina HOM05D007571 ORTHO05D009439 5.4e-15 84.7 125 47.2
BcaB07g33447 Brassica carinata HOM05D007571 ORTHO05D009439 5.4e-15 84.7 64 68.8
vmacro19538 Vaccinium macrocarpon HOM05D007571 ORTHO05D009439 5.4e-15 84.7 81 60.5
CARHR040010 Cardamine hirsuta HOM05D007571 ORTHO05D009439 7.0e-15 84.3 63 66.7
Gohir.D12G019350 Gossypium hirsutum HOM05D007571 ORTHO05D009439 7.0e-15 84.3 99 48.5
Nn6g34507 Nelumbo nucifera HOM05D007571 ORTHO05D009439 7.0e-15 84.3 97 50.5
Duzib052G0547 Durio zibethinus HOM05D007571 ORTHO05D009439 9.1e-15 84.0 90 52.2
HanXRQChr02g0053531 Helianthus annuus HOM05D007571 ORTHO05D009439 9.1e-15 84.0 81 58.0
Sed0007395 Sechium edule HOM05D007571 ORTHO05D009439 9.1e-15 84.0 101 52.5
Haze_10272 Corylus avellana HOM05D007571 ORTHO05D009439 1.6e-14 83.2 97 53.6
CsaV3_7G007730 Cucumis sativus L. HOM05D007571 ORTHO05D009439 1.6e-14 83.2 103 50.5
Migut.F01585 Erythranthe guttata HOM05D007571 ORTHO05D009439 1.6e-14 83.2 69 65.2
Phvul.007G046800 Phaseolus vulgaris HOM05D007571 ORTHO05D009439 1.6e-14 83.2 102 51.0
Rhsim05G0092500 Rhododendron simsii HOM05D007571 ORTHO05D009439 1.6e-14 83.2 101 50.5
CSS0048413 Camellia sinensis var. sinensis HOM05D007571 ORTHO05D009439 2.0e-14 82.8 83 59.0
ECA238G3778 Erigeron canadensis HOM05D007571 ORTHO05D009439 2.7e-14 82.4 90 55.6
Gohir.A12G018900 Gossypium hirsutum HOM05D007571 ORTHO05D009439 2.7e-14 82.4 90 48.9
MELO3C018528.2 Cucumis melo HOM05D007571 ORTHO05D009439 3.5e-14 82.0 119 45.4
Lsat_1_v5_gn_2_105800 Lactuca sativa HOM05D007571 ORTHO05D009439 3.5e-14 82.0 91 54.9
QL11p029955 Quercus lobata HOM05D007571 ORTHO05D009439 5.9e-14 81.3 105 46.7
CANSAT25G0272 Cannabis sativa HOM05D007571 ORTHO05D009439 7.7e-14 80.9 81 58.0
CANSAT25G2750 Cannabis sativa HOM05D007571 ORTHO05D009439 7.7e-14 80.9 81 58.0
THA.LOC104825387 Tarenaya hassleriana HOM05D007571 ORTHO05D009439 7.7e-14 80.9 110 48.2
Medtr1g106075 Medicago truncatula HOM05D007571 ORTHO05D009439 1.0e-13 80.5 101 50.5
Peaxi162Scf00519g00423 Petunia axillaris HOM05D007571 ORTHO05D009439 1.0e-13 80.5 82 58.5
DCAR_028375 Daucus carota HOM05D007571 ORTHO05D009439 1.3e-13 80.1 81 58.0
RcHm_v2.0_Chr6g0252541 Rosa chinensis HOM05D007571 ORTHO05D009439 1.3e-13 80.1 81 58.0
Actinidia27996 Actinidia chinensis HOM05D007571 ORTHO05D009439 1.7e-13 79.7 87 54.0
Lj5g0013426 Lotus japonicus HOM05D007571 ORTHO05D009439 1.7e-13 79.7 102 50.0
Prupe.8G147200 Prunus persica HOM05D007571 ORTHO05D009439 1.7e-13 79.7 91 56.0
Sp1g36830 Schrenkiella parvula HOM05D007571 ORTHO05D009439 1.7e-13 79.7 102 47.1
PGSC0003DMG400023397 Solanum tuberosum HOM05D007571 ORTHO05D009439 1.7e-13 79.7 60 70.0
MD10G1108300 Malus domestica HOM05D007571 ORTHO05D009439 2.2e-13 79.3 112 50.0
GSVIVG01037807001 Vitis vinifera HOM05D007571 ORTHO05D009439 2.2e-13 79.3 93 54.8
Medtr3g008630 Medicago truncatula HOM05D007571 ORTHO05D009439 2.9e-13 79.0 101 50.5
Nitab4.5_0017347g0020 Nicotiana tabacum HOM05D007571 ORTHO05D009439 2.9e-13 79.0 70 60.0
Dinv15820 Davidia involucrata HOM05D007571 ORTHO05D009439 3.8e-13 78.6 94 54.3
Nitab4.5_0000687g0180 Nicotiana tabacum HOM05D007571 ORTHO05D009439 5.0e-13 78.2 82 56.1
SGA_v2.0_scaffold62G21311 Striga asiatica HOM05D007002 ORTHO05D008602 5.0e-13 78.2 59 67.8
Actinidia04391 Actinidia chinensis HOM05D007571 ORTHO05D009439 8.5e-13 77.4 96 53.1
FvH4_2g03581 Fragaria vesca HOM05D007571 ORTHO05D009439 8.5e-13 77.4 81 54.3
FAN20G2923 Fragaria x ananassa HOM05D007571 ORTHO05D009439 8.5e-13 77.4 81 54.3
ClCG02G007100 Citrullus lanatus HOM05D007571 ORTHO05D009439 5.5e-12 74.7 86 53.5
Glyma.10G256000 Glycine max HOM05D007571 ORTHO05D009439 5.5e-12 74.7 109 47.7
PSO675G4064 Papaver somniferum HOM05D007571 ORTHO05D009439 7.2e-12 74.3 70 58.6
PSO541G4064 Papaver somniferum HOM05D007571 ORTHO05D009439 9.4e-12 73.9 70 58.6
SEGI_38446 Sequoiadendron giganteum HOM05D007571 ORTHO05D009439 1.2e-11 73.6 102 49.0
Lalb_Chr21g0308001 Lupinus albus HOM05D007571 ORTHO05D009439 1.6e-11 73.2 86 51.2
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 8.0e-11 70.9 79 48.1
BolC6t35600H Brassica oleracea HOM05D007571 ORTHO05D009439 1.0e-10 70.5 93 48.4
VMungo0720G0585 Vigna mungo HOM05D007571 ORTHO05D009439 1.0e-10 70.5 99 47.5
ATR0739G046 Amborella trichopoda HOM05D007571 ORTHO05D009439 1.4e-10 70.1 67 58.2
CiPaw.05G019300 Carya illinoinensis HOM05D000470 ORTHO05D000348 2.3e-10 69.3 61 59.0
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.8e-10 67.8 79 46.8
AagrBONN_evm.TU.Sc2ySwM_228.3762 Anthoceros agrestis HOM05D007571 ORTHO05D009439 3.4e-09 65.5 102 42.2
Sabra16G0182000 Salix brachista HOM05D007571 ORTHO05D009439 1.7e-08 63.2 141 34.8
CBR_g6736 Chara braunii HOM05D007571 ORTHO05D009439 1.1e-07 60.5 64 53.1
SalBow6G2452 Salvia bowleyana HOM05D007571 ORTHO05D009439 1.1e-07 60.5 76 47.4
Pp3c17_8360 Physcomitrium patens HOM05D007571 ORTHO05D009439 3.5e-06 55.5 119 37.8


User provided reference genes

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