Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 1.5e-255 885.9 523 100.0
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 1.7e-150 537.0 531 69.5
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 1.8e-35 154.8 115 70.4
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 7.2e-21 106.3 109 49.5
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.8e-20 104.4 109 48.6
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 1.8e-19 101.7 172 39.0
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 9.8e-18 95.9 106 49.1
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 6.3e-17 93.2 164 39.6
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.1e-16 92.4 127 44.1
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 1.8e-16 91.7 154 39.6
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.4e-16 91.3 161 39.8
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 2.4e-16 91.3 138 37.0
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 2.4e-16 91.3 159 41.5
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 5.4e-16 90.1 168 40.5
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 7.0e-16 89.7 108 45.4
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 7.0e-16 89.7 138 39.1
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 9.2e-16 89.4 161 38.5
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 9.2e-16 89.4 130 40.8
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 1.2e-15 89.0 135 40.7
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 1.2e-15 89.0 141 38.3
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 1.2e-15 89.0 113 42.5
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.2e-15 89.0 145 38.6
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 1.2e-15 89.0 108 46.3
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 1.6e-15 88.6 109 44.0
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.6e-15 88.6 147 38.8
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.6e-15 88.6 161 41.0
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 1.6e-15 88.6 161 38.5
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 2.0e-15 88.2 108 42.6
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 2.0e-15 88.2 161 37.9
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 2.0e-15 88.2 105 42.9
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 2.7e-15 87.8 121 42.1
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 3.5e-15 87.4 533 28.1
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 3.5e-15 87.4 162 38.9
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 3.5e-15 87.4 176 34.7
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 4.5e-15 87.0 152 36.2
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 4.5e-15 87.0 109 42.2
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 4.5e-15 87.0 129 42.6
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 5.9e-15 86.7 152 36.2
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 5.9e-15 86.7 109 43.1
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 5.9e-15 86.7 133 37.6
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 7.8e-15 86.3 153 37.9
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 7.8e-15 86.3 161 41.0
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 1.0e-14 85.9 125 40.8
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 1.0e-14 85.9 105 41.9
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.3e-14 85.5 108 43.5
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 1.7e-14 85.1 171 36.3
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 1.7e-14 85.1 171 36.3
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 1.7e-14 85.1 107 43.0
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 1.7e-14 85.1 107 43.0
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 2.3e-14 84.7 132 38.6
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 2.3e-14 84.7 161 36.6
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 2.3e-14 84.7 105 41.9
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 2.9e-14 84.3 104 44.2
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 2.9e-14 84.3 161 39.1
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.9e-14 84.3 161 39.1
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.9e-14 84.3 161 39.1
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 2.9e-14 84.3 133 39.8
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 2.9e-14 84.3 127 39.4
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.9e-14 84.3 108 43.5
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.9e-14 84.3 108 43.5
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 3.9e-14 84.0 161 39.8
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 3.9e-14 84.0 105 42.9
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 5.0e-14 83.6 163 36.2
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 5.0e-14 83.6 129 41.1
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 5.0e-14 83.6 169 36.7
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 5.0e-14 83.6 169 36.7
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 5.0e-14 83.6 167 37.7
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 5.0e-14 83.6 113 40.7
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 6.6e-14 83.2 150 33.3
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 6.6e-14 83.2 128 39.8
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 6.6e-14 83.2 150 38.7
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 8.6e-14 82.8 148 35.8
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 8.6e-14 82.8 130 38.5
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 8.6e-14 82.8 134 42.5
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 8.6e-14 82.8 105 42.9
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.1e-13 82.4 171 34.5
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 1.1e-13 82.4 169 35.5
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 1.1e-13 82.4 108 39.8
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.1e-13 82.4 168 31.0
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.5e-13 82.0 158 33.5
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 1.5e-13 82.0 105 42.9
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 1.9e-13 81.6 551 25.0
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 2.5e-13 81.3 133 38.3
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 2.5e-13 81.3 104 43.3
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 2.5e-13 81.3 112 39.3
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 2.5e-13 81.3 161 37.3
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 4.3e-13 80.5 139 36.0
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 5.6e-13 80.1 155 34.2
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 5.6e-13 80.1 150 36.0
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 5.6e-13 80.1 513 27.3
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 7.3e-13 79.7 186 35.5
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 7.3e-13 79.7 161 32.9
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 9.5e-13 79.3 108 41.7
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 9.5e-13 79.3 144 38.2
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 9.5e-13 79.3 159 35.2
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 9.5e-13 79.3 164 35.4
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 9.5e-13 79.3 171 34.5
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 1.2e-12 79.0 161 32.9
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 1.2e-12 79.0 144 38.2
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 1.6e-12 78.6 407 27.5
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 2.1e-12 78.2 110 39.1
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 2.1e-12 78.2 104 41.3
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 2.8e-12 77.8 130 39.2
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 2.8e-12 77.8 106 41.5
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 2.8e-12 77.8 177 35.6
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 4.7e-12 77.0 155 33.5
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 6.1e-12 76.6 161 37.3
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 8.0e-12 76.3 103 41.7
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 1.0e-11 75.9 161 33.5
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 1.0e-11 75.9 145 37.9
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 1.0e-11 75.9 106 44.3
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 4.0e-11 73.9 137 35.0
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 4.0e-11 73.9 103 40.8
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 5.2e-11 73.6 537 25.3
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 5.2e-11 73.6 145 36.6
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 8.9e-11 72.8 102 42.2
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 2.6e-10 71.2 162 34.0
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 3.4e-10 70.9 110 40.0
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 4.4e-10 70.5 522 25.1
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 1.3e-09 68.9 505 23.8
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 2.2e-09 68.2 106 36.8
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 6.4e-09 66.6 162 30.9
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 1.9e-08 65.1 152 33.6
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 3.2e-08 64.3 438 24.7
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 9.2e-08 62.8 521 25.0
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 1.2e-07 62.4 510 25.1
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 2.0e-07 61.6 536 25.2
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 3.5e-07 60.8 69 44.9
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 4.6e-07 60.5 581 24.1
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 2.3e-06 58.2 61 44.3
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 5.0e-06 57.0 101 33.7
SMO119G0313 Selaginella moellendorffii HOM05D004938 ORTHO05D006035 5.0e-06 57.0 121 33.1
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 8.6e-06 56.2 539 23.9


User provided reference genes

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