Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 1.5e-110 402.9 212 100.0
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 3.0e-82 308.9 214 79.0
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.5e-57 226.9 198 66.2
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 2.5e-57 226.1 212 63.7
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.8e-56 222.6 200 63.0
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.4e-55 220.3 200 63.0
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 5.3e-55 218.4 195 64.6
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 6.9e-55 218.0 211 61.1
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 6.9e-55 218.0 200 62.0
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 9.0e-55 217.6 188 63.8
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 2.0e-54 216.5 198 63.6
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 2.6e-54 216.1 188 63.3
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 3.4e-54 215.7 198 61.1
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 3.4e-54 215.7 209 58.9
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 4.5e-54 215.3 200 60.5
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 4.5e-54 215.3 200 64.0
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.3e-53 213.8 199 61.8
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 1.7e-53 213.4 198 61.6
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 1.7e-53 213.4 210 58.6
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 2.2e-53 213.0 211 55.9
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.9e-53 212.6 211 55.9
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 2.9e-53 212.6 204 63.2
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 2.9e-53 212.6 204 60.3
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 3.8e-53 212.2 211 59.7
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 3.8e-53 212.2 216 57.9
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 5.0e-53 211.8 205 60.0
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 8.5e-53 211.1 214 57.9
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 8.5e-53 211.1 208 61.1
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.1e-52 210.7 206 58.7
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.1e-52 210.7 208 60.6
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 1.4e-52 210.3 200 60.5
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 1.9e-52 209.9 210 58.1
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 2.5e-52 209.5 192 62.0
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 3.2e-52 209.1 204 60.3
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 3.2e-52 209.1 211 60.7
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 3.2e-52 209.1 204 60.3
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 3.2e-52 209.1 202 59.9
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 5.5e-52 208.4 204 60.3
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 7.2e-52 208.0 195 62.1
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 9.4e-52 207.6 204 58.3
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.2e-51 207.2 211 60.2
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 1.2e-51 207.2 200 60.0
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 2.1e-51 206.5 204 59.8
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 3.6e-51 205.7 204 59.3
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 6.1e-51 204.9 193 60.6
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.0e-50 204.1 211 54.0
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 1.0e-50 204.1 200 58.0
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 1.8e-50 203.4 204 57.4
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 1.8e-50 203.4 200 57.5
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 1.8e-50 203.4 200 58.5
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 2.3e-50 203.0 176 64.2
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 2.3e-50 203.0 197 58.9
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 5.1e-50 201.8 204 55.9
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 1.1e-49 200.7 204 57.4
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 1.5e-49 200.3 209 55.0
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 1.5e-49 200.3 229 53.7
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 2.5e-49 199.5 200 58.0
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 2.5e-49 199.5 204 56.4
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 4.3e-49 198.7 192 58.3
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 1.7e-48 196.8 207 54.1
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 2.2e-48 196.4 205 54.6
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 2.8e-48 196.1 210 52.9
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 2.8e-48 196.1 197 57.4
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 6.3e-48 194.9 212 52.8
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 6.3e-48 194.9 200 55.0
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 6.3e-48 194.9 209 54.1
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 8.2e-48 194.5 200 55.5
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 1.1e-47 194.1 212 52.8
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 1.1e-47 194.1 212 52.8
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 1.1e-47 194.1 212 52.8
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 1.8e-47 193.4 206 55.8
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 4.1e-47 192.2 209 53.6
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 2.6e-46 189.5 192 57.8
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 7.7e-46 188.0 195 56.4
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 1.3e-45 187.2 214 51.9
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 1.3e-45 187.2 192 55.2
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 2.9e-45 186.0 194 57.7
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 2.9e-45 186.0 199 53.3
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 2.9e-45 186.0 192 55.2
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 5.0e-45 185.3 152 66.4
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 6.5e-45 184.9 155 64.5
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 6.5e-45 184.9 199 55.8
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 6.5e-45 184.9 169 61.5
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 8.5e-45 184.5 199 52.8
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 8.5e-45 184.5 155 64.5
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 8.5e-45 184.5 149 67.1
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 1.9e-44 183.3 197 53.3
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 1.9e-44 183.3 236 49.2
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 3.2e-44 182.6 195 52.8
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 3.2e-44 182.6 195 52.8
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 3.2e-44 182.6 195 52.8
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 3.6e-43 179.1 213 50.7
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 4.7e-43 178.7 190 52.1
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 4.7e-43 178.7 190 52.1
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 4.7e-43 178.7 191 56.0
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 6.1e-43 178.3 197 51.8
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.0e-42 177.6 209 52.6
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 1.4e-42 177.2 204 52.5
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 1.3e-40 170.6 125 69.6
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.7e-40 170.2 111 73.9
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 2.2e-40 169.9 145 61.4
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.7e-40 169.1 143 63.6
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 4.8e-40 168.7 118 71.2
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 6.3e-40 168.3 109 73.4
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 6.3e-40 168.3 121 67.8
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 6.3e-40 168.3 256 45.3
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 2.0e-38 163.3 127 63.8
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.0e-37 161.0 204 47.1
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 1.3e-37 160.6 174 52.9
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 2.2e-37 159.8 195 45.6
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 1.5e-36 157.1 122 60.7
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 8.8e-34 147.9 212 49.5
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 3.5e-30 136.0 111 64.0
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 3.0e-26 122.9 148 52.0
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 5.2e-26 122.1 134 57.5
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 2.0e-25 120.2 187 39.0
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 7.5e-25 118.2 148 50.7
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 4.8e-24 115.5 100 61.0
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 8.3e-24 114.8 100 61.0
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 4.1e-23 112.5 100 60.0
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 1.9e-20 103.6 181 35.9
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 5.5e-20 102.1 93 58.1
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 3.6e-19 99.4 171 34.5
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 8.8e-18 94.7 111 59.5
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 2.2e-16 90.1 162 42.6
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 2.8e-16 89.7 67 65.7
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 8.3e-16 88.2 65 64.6
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 8.3e-16 88.2 113 38.9
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 1.1e-15 87.8 125 44.8
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 7.7e-14 81.6 52 75.0
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 1.0e-13 81.3 134 41.8
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 2.5e-12 76.6 163 37.4
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 9.5e-12 74.7 150 34.0
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 2.8e-11 73.2 89 48.3
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 4.4e-09 65.9 82 46.3


User provided reference genes

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