Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb055510 Zea mays HOM05D003460 ORTHO05D004277 2.1e-123 445.7 213 100.0
Zm00001eb382450 Zea mays HOM05D003460 ORTHO05D004277 1.4e-92 343.2 207 83.1
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 2.5e-89 332.4 208 82.7
Os07g0648266 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 2.2e-69 266.2 206 68.4
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 5.5e-52 208.4 200 53.5
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 7.2e-52 208.0 177 58.2
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 7.2e-52 208.0 177 57.1
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 2.7e-51 206.1 177 61.0
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 6.1e-51 204.9 177 57.6
Dinv43816 Davidia involucrata HOM05D003460 ORTHO05D004277 1.0e-50 204.1 208 50.5
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 1.4e-50 203.8 177 58.2
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 3.0e-50 202.6 177 59.9
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 4.0e-50 202.2 179 57.5
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 5.2e-50 201.8 179 58.1
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 6.7e-50 201.4 176 58.5
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 6.7e-50 201.4 196 54.6
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 6.7e-50 201.4 177 57.1
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 8.8e-50 201.1 177 58.2
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 1.1e-49 200.7 177 55.4
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 1.1e-49 200.7 196 54.6
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 1.5e-49 200.3 177 57.6
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 1.5e-49 200.3 177 57.6
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 3.3e-49 199.1 176 56.2
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 3.3e-49 199.1 176 56.2
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 3.3e-49 199.1 176 56.2
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 4.4e-49 198.7 176 56.2
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 7.5e-49 198.0 196 55.1
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 7.5e-49 198.0 179 55.9
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 7.5e-49 198.0 177 57.6
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 9.7e-49 197.6 179 55.3
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 1.3e-48 197.2 196 51.5
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 1.7e-48 196.8 173 57.2
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.7e-48 196.8 176 55.7
HPP92_028275 Vanilla planifolia HOM05D003460 ORTHO05D004277 1.7e-48 196.8 177 54.8
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 2.2e-48 196.4 176 55.7
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 2.8e-48 196.1 177 54.8
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 2.8e-48 196.1 206 50.0
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 4.8e-48 195.3 177 55.9
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 8.2e-48 194.5 177 54.8
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 8.2e-48 194.5 177 55.4
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 1.1e-47 194.1 207 49.8
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 2.4e-47 193.0 177 54.8
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 2.4e-47 193.0 177 57.1
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 4.1e-47 192.2 207 48.3
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 5.3e-47 191.8 176 55.1
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 5.3e-47 191.8 207 47.8
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 9.1e-47 191.0 179 54.7
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 1.2e-46 190.7 177 57.6
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 1.2e-46 190.7 179 53.6
Zm00001eb291570 Zea mays HOM05D003460 ORTHO05D004277 1.2e-46 190.7 131 77.1
MELO3C006109.2 Cucumis melo HOM05D002082 ORTHO05D002130 1.6e-46 190.3 177 54.2
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 1.6e-46 190.3 179 55.3
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 2.0e-46 189.9 177 53.7
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 2.0e-46 189.9 177 53.7
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 2.7e-46 189.5 177 55.4
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 2.7e-46 189.5 177 53.1
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 3.5e-46 189.1 176 56.8
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 3.5e-46 189.1 176 54.5
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 3.5e-46 189.1 177 54.8
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 3.5e-46 189.1 179 53.1
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 3.5e-46 189.1 177 53.1
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 4.5e-46 188.7 177 54.2
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 4.5e-46 188.7 176 55.7
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 5.9e-46 188.3 177 55.9
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 5.9e-46 188.3 179 53.6
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 5.9e-46 188.3 177 55.9
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 1.0e-45 187.6 197 52.3
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 2.9e-45 186.0 176 54.0
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 3.8e-45 185.7 197 51.8
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 3.8e-45 185.7 178 56.2
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 5.0e-45 185.3 177 53.1
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 6.5e-45 184.9 197 51.8
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 6.5e-45 184.9 179 55.3
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 1.5e-44 183.7 176 54.0
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 1.5e-44 183.7 176 54.0
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 1.5e-44 183.7 177 52.5
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 1.5e-44 183.7 177 52.0
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 1.5e-44 183.7 176 53.4
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 1.9e-44 183.3 173 54.3
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 1.9e-44 183.3 197 51.3
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 2.5e-44 183.0 175 54.3
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 4.2e-44 182.2 194 52.1
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 4.2e-44 182.2 194 52.1
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 4.2e-44 182.2 194 52.1
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 4.2e-44 182.2 194 52.1
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 4.2e-44 182.2 194 52.1
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 4.2e-44 182.2 177 52.5
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 5.5e-44 181.8 177 54.8
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 9.4e-44 181.0 185 53.5
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 9.4e-44 181.0 177 53.1
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 9.4e-44 181.0 179 53.1
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 1.2e-43 180.6 171 50.9
Atru.chr5.497 Acer truncatum HOM05D003460 ORTHO05D004277 1.6e-43 180.3 208 48.6
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 1.6e-43 180.3 177 52.5
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 1.6e-43 180.3 197 50.8
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 2.1e-43 179.9 173 53.8
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 2.1e-43 179.9 176 54.0
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 2.7e-43 179.5 179 54.2
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 2.7e-43 179.5 178 51.7
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 3.6e-43 179.1 174 52.9
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 1.0e-42 177.6 177 55.4
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 1.4e-42 177.2 177 53.7
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 1.4e-42 177.2 176 51.7
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 1.8e-42 176.8 178 52.2
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 3.0e-42 176.0 179 54.2
TPR.G8688 Trifolium pratense HOM05D003460 ORTHO05D004277 3.0e-42 176.0 177 53.1
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 5.2e-42 175.3 197 49.7
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 8.8e-42 174.5 179 53.6
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 1.5e-41 173.7 189 51.3
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 1.5e-41 173.7 189 51.3
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 1.5e-41 173.7 177 51.4
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 1.5e-41 173.7 179 52.5
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 2.0e-41 173.3 179 53.1
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 2.0e-41 173.3 179 53.1
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 2.0e-41 173.3 177 54.2
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 2.0e-41 173.3 177 54.8
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 2.6e-41 172.9 179 53.6
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 4.4e-41 172.2 177 50.8
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 5.7e-41 171.8 177 51.4
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 5.7e-41 171.8 179 49.7
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 5.7e-41 171.8 181 50.3
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 7.5e-41 171.4 179 52.5
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 7.5e-41 171.4 180 53.3
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 1.3e-40 170.6 182 50.5
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 2.8e-40 169.5 177 49.7
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 4.8e-40 168.7 177 49.2
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 4.8e-40 168.7 180 55.6
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 8.3e-40 167.9 180 51.1
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 8.3e-40 167.9 177 50.8
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 1.4e-39 167.2 177 50.3
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 1.4e-39 167.2 188 47.9
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 1.4e-39 167.2 173 50.3
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 5.9e-38 161.8 200 47.5
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 1.3e-37 160.6 177 53.1
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 2.9e-37 159.5 177 47.5
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 6.5e-37 158.3 179 49.7
HPP92_025394 Vanilla planifolia HOM05D003460 ORTHO05D004277 9.4e-36 154.5 146 52.1
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 1.2e-35 154.1 131 55.7
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 3.6e-35 152.5 131 54.2
Pp3c11_14610 Physcomitrium patens HOM05D003460 ORTHO05D004277 8.0e-35 151.4 136 52.2
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 3.7e-32 142.5 178 45.5
Os10g0550066 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 2.4e-31 139.8 88 75.0
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 4.1e-31 139.0 232 37.5
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 2.0e-30 136.7 123 52.0
CDE04G0432 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 2.7e-30 136.3 189 44.4
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 3.6e-27 125.9 94 64.9
Phvul.002G081700 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 5.2e-26 122.1 84 66.7
Zm00001eb373730 Zea mays HOM05D003460 ORTHO05D004277 1.2e-25 120.9 57 96.5
Zm00001eb156420 Zea mays HOM05D003460 ORTHO05D004277 2.6e-25 119.8 57 96.5
SHI13448 Sapria himalayana HOM05D003460 ORTHO05D004277 3.2e-23 112.8 165 40.0
CBR_g44444 Chara braunii HOM05D003460 ORTHO05D004277 7.0e-23 111.7 128 47.7
AagrBONN_evm.TU.Sc2ySwM_344.2569 Anthoceros agrestis HOM05D003460 ORTHO05D004277 1.4e-18 97.4 121 44.6
SHI13450 Sapria himalayana HOM05D003460 ORTHO05D000014 1.1e-07 61.2 44 61.4
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 1.9e-07 60.5 36 69.4
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 5.4e-07 58.9 28 92.9
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 5.4e-07 58.9 28 92.9
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 5.4e-07 58.9 28 92.9
Cfa003926 Carpinus fangiana HOM05D003460 ORTHO05D004277 1.6e-06 57.4 36 72.2


User provided reference genes

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