Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb054850 Zea mays HOM05D002598 ORTHO05D003130 5.9e-83 310.8 159 100.0
Zm00001eb220970 Zea mays HOM05D002598 ORTHO05D003130 3.1e-60 235.3 201 67.2
Os10g0495500 Oryza sativa ssp. japonica HOM05D002598 ORTHO05D003130 9.8e-54 213.8 202 58.4
HPP92_014667 Vanilla planifolia HOM05D002598 ORTHO05D003130 1.7e-29 133.3 200 41.0
SGA_v2.0_scaffold1G00764 Striga asiatica HOM05D002598 ORTHO05D003130 3.0e-26 122.5 209 37.3
PGSC0003DMG400017744 Solanum tuberosum HOM05D002598 ORTHO05D003130 3.9e-26 122.1 203 37.4
Migut.D00544 Erythranthe guttata HOM05D002598 ORTHO05D003130 1.1e-25 120.6 209 38.8
Sopen02g026290 Solanum pennellii HOM05D002598 ORTHO05D003130 1.5e-25 120.2 203 36.9
SalBow2G0823 Salvia bowleyana HOM05D002598 ORTHO05D003130 2.5e-25 119.4 207 37.2
MBI03_g11911_MAGBIO Magnolia biondii HOM05D002598 ORTHO05D003130 3.3e-25 119.0 198 37.4
PSO063G4785 Papaver somniferum HOM05D002598 ORTHO05D003130 3.3e-25 119.0 197 39.1
CDE04G1968 Ceratophyllum demersum HOM05D002598 ORTHO05D003130 4.3e-25 118.6 197 38.6
Peaxi162Scf00048g01725 Petunia axillaris HOM05D002598 ORTHO05D003130 4.3e-25 118.6 200 39.0
unitig_22.g5309 Utricularia gibba HOM05D002598 ORTHO05D003130 4.3e-25 118.6 211 37.0
Cfa010285 Carpinus fangiana HOM05D002598 ORTHO05D003130 7.3e-25 117.9 198 37.4
PSO170G5574 Papaver somniferum HOM05D002598 ORTHO05D003130 9.6e-25 117.5 197 38.6
QL04p079433 Quercus lobata HOM05D002598 ORTHO05D003130 9.6e-25 117.5 197 36.5
Nn4g25047 Nelumbo nucifera HOM05D002598 ORTHO05D003130 2.1e-24 116.3 197 37.6
Aqoxy5G04166 Aquilegia oxysepala HOM05D002598 ORTHO05D003130 2.8e-24 115.9 197 37.1
Haze_23015 Corylus avellana HOM05D002598 ORTHO05D003130 3.6e-24 115.5 198 36.9
Cc01_g05200 Coffea canephora HOM05D002598 ORTHO05D003130 4.7e-24 115.2 200 37.0
Sed0003342 Sechium edule HOM05D002598 ORTHO05D003130 4.7e-24 115.2 195 37.4
CAN.G809.66 Capsicum annuum HOM05D002598 ORTHO05D003130 6.2e-24 114.8 198 36.9
CANSAT78G1360 Cannabis sativa HOM05D002598 ORTHO05D003130 1.1e-23 114.0 199 37.2
CsaV3_2G034180 Cucumis sativus L. HOM05D002598 ORTHO05D003130 1.8e-23 113.2 198 36.4
DCAR_024389 Daucus carota HOM05D002598 ORTHO05D003130 1.8e-23 113.2 197 36.0
AT2G18220 Arabidopsis thaliana HOM05D002598 ORTHO05D003130 3.1e-23 112.5 198 36.9
Lj2A672T48 Lonicera japonica HOM05D002598 ORTHO05D003130 3.1e-23 112.5 198 36.4
Rhsim13G0227000 Rhododendron simsii HOM05D002598 ORTHO05D003130 3.1e-23 112.5 197 34.0
SEGI_31704 Sequoiadendron giganteum HOM05D002598 ORTHO05D003130 3.1e-23 112.5 198 35.9
Solyc02g081680.4 Solanum lycopersicum HOM05D002598 ORTHO05D003130 3.1e-23 112.5 198 36.9
TWI23G0969 Tripterygium wilfordii HOM05D002598 ORTHO05D003130 3.1e-23 112.5 197 35.5
GSVIVG01037396001 Vitis vinifera HOM05D002598 ORTHO05D003130 3.1e-23 112.5 197 36.0
MELO3C008200.2 Cucumis melo HOM05D002598 ORTHO05D003130 4.0e-23 112.1 200 37.0
TAR362G0246 Trochodendron aralioides HOM05D002598 ORTHO05D003130 4.0e-23 112.1 197 35.0
Atru.chr2.2210 Acer truncatum HOM05D002598 ORTHO05D003130 5.2e-23 111.7 197 35.5
COL.COLO4_05528 Corchorus olitorius HOM05D002598 ORTHO05D003130 5.2e-23 111.7 197 36.0
THA.LOC104811191 Tarenaya hassleriana HOM05D002598 ORTHO05D003130 5.2e-23 111.7 198 35.4
vmacro21749 Vaccinium macrocarpon HOM05D002598 ORTHO05D003130 5.2e-23 111.7 197 34.0
ClCG11G007030 Citrullus lanatus HOM05D002598 ORTHO05D003130 6.8e-23 111.3 195 36.4
QL04p060728 Quercus lobata HOM05D002598 ORTHO05D003130 6.8e-23 111.3 197 35.0
Manes.17G118000 Manihot esculenta HOM05D002598 ORTHO05D003130 8.9e-23 110.9 195 36.4
Potri.001G012800 Populus trichocarpa HOM05D002598 ORTHO05D003130 8.9e-23 110.9 195 36.9
TAR633G0485 Trochodendron aralioides HOM05D002598 ORTHO05D003130 8.9e-23 110.9 197 35.5
arahy.Tifrunner.gnm1.ann1.EL0I67 Arachis hypogaea HOM05D002598 ORTHO05D003130 1.2e-22 110.5 197 35.0
Lsat_1_v5_gn_6_50761 Lactuca sativa HOM05D002598 ORTHO05D003130 1.2e-22 110.5 197 36.0
CiPaw.14G129400 Carya illinoinensis HOM05D002598 ORTHO05D003130 1.5e-22 110.2 197 35.0
Eucgr.B03642 Eucalyptus grandis HOM05D002598 ORTHO05D003130 1.5e-22 110.2 197 36.0
Aa31LG8G15770 Aethionema arabicum HOM05D002598 ORTHO05D003130 2.0e-22 109.8 198 35.9
Glyma.13G335000 Glycine max HOM05D002598 ORTHO05D003130 2.0e-22 109.8 197 35.0
Thecc.05G325500 Theobroma cacao HOM05D002598 ORTHO05D003130 2.0e-22 109.8 197 35.0
Phvul.007G004700 Phaseolus vulgaris HOM05D002598 ORTHO05D003130 2.6e-22 109.4 197 35.0
Pp3c24_4150 Physcomitrium patens HOM05D002598 ORTHO05D003130 2.6e-22 109.4 171 38.0
Actinidia01842 Actinidia chinensis HOM05D002598 ORTHO05D003130 3.4e-22 109.0 197 34.0
Actinidia06866 Actinidia chinensis HOM05D002598 ORTHO05D003130 3.4e-22 109.0 197 33.5
arahy.Tifrunner.gnm1.ann1.N6X2T2 Arachis hypogaea HOM05D002598 ORTHO05D003130 3.4e-22 109.0 197 34.5
Ciclev10014393m.g Citrus clementina HOM05D002598 ORTHO05D003130 4.4e-22 108.6 198 35.4
Duzib128G0393 Durio zibethinus HOM05D002598 ORTHO05D003130 4.4e-22 108.6 197 35.0
Glyma.15G039500 Glycine max HOM05D002598 ORTHO05D003130 4.4e-22 108.6 197 34.5
PGR102G0507 Punica granatum HOM05D002598 ORTHO05D003130 4.4e-22 108.6 197 34.5
Sabra01G0009500 Salix brachista HOM05D002598 ORTHO05D003130 4.4e-22 108.6 195 36.4
SHI30489 Sapria himalayana HOM05D002598 ORTHO05D003130 4.4e-22 108.6 198 32.8
AL3G51460 Arabidopsis lyrata HOM05D002598 ORTHO05D003130 5.8e-22 108.2 198 35.9
Carub.0003s3239 Capsella rubella HOM05D002598 ORTHO05D003130 5.8e-22 108.2 198 35.9
Lalb_Chr06g0164451 Lupinus albus HOM05D002598 ORTHO05D003130 5.8e-22 108.2 197 35.0
ATR0609G119 Amborella trichopoda HOM05D002598 ORTHO05D003130 7.6e-22 107.8 197 36.5
Gohir.A08G204600 Gossypium hirsutum HOM05D002598 ORTHO05D003130 7.6e-22 107.8 197 35.5
Gohir.D08G221900 Gossypium hirsutum HOM05D002598 ORTHO05D003130 7.6e-22 107.8 197 35.5
Gorai.004G235600 Gossypium raimondii HOM05D002598 ORTHO05D003130 7.6e-22 107.8 197 35.5
VMungo0720G2693 Vigna mungo HOM05D002598 ORTHO05D003130 7.6e-22 107.8 197 35.0
Nitab4.5_0006794g0020 Nicotiana tabacum HOM05D002598 ORTHO05D003130 9.9e-22 107.5 224 36.2
Dinv36321 Davidia involucrata HOM05D002598 ORTHO05D003130 1.7e-21 106.7 197 34.5
Zm00001eb203560 Zea mays HOM05D002598 ORTHO05D000365 1.7e-21 106.7 58 91.4
C03p59050 Brassica napus HOM05D002598 ORTHO05D003130 2.9e-21 105.9 169 39.1
Lj5g0026664 Lotus japonicus HOM05D002598 ORTHO05D003130 2.9e-21 105.9 200 36.0
RcHm_v2.0_Chr5g0080571 Rosa chinensis HOM05D002598 ORTHO05D003130 3.8e-21 105.5 197 36.5
Ca_11394_v3 Cicer arietinum L. HOM05D002598 ORTHO05D003130 4.9e-21 105.1 198 36.4
Ca_30896_v3 Cicer arietinum L. HOM05D002598 ORTHO05D003130 4.9e-21 105.1 198 36.4
BcaB03g16611 Brassica carinata HOM05D002598 ORTHO05D003130 6.4e-21 104.8 198 34.8
A07p02490 Brassica napus HOM05D002598 ORTHO05D003130 6.4e-21 104.8 198 34.8
C07p04660 Brassica napus HOM05D002598 ORTHO05D003130 6.4e-21 104.8 198 34.8
BraA07t28045Z Brassica rapa HOM05D002598 ORTHO05D003130 6.4e-21 104.8 198 34.8
Psat6g226520 Pisum sativum HOM05D002598 ORTHO05D003130 8.4e-21 104.4 197 35.5
HanXRQChr02g0056671 Helianthus annuus HOM05D002598 ORTHO05D003130 1.1e-20 104.0 190 35.8
BcaC06g36386 Brassica carinata HOM05D002598 ORTHO05D003130 1.4e-20 103.6 198 34.8
BolC7t40867H Brassica oleracea HOM05D002598 ORTHO05D003130 1.4e-20 103.6 198 34.8
FvH4_3g44260 Fragaria vesca HOM05D002598 ORTHO05D003130 1.4e-20 103.6 197 35.5
FAN11G3610 Fragaria x ananassa HOM05D002598 ORTHO05D003130 1.4e-20 103.6 197 35.5
FAN21G1479 Fragaria x ananassa HOM05D002598 ORTHO05D003130 1.4e-20 103.6 197 35.5
TPR.G38575 Trifolium pratense HOM05D002598 ORTHO05D003130 2.4e-20 102.8 199 35.7
AagrBONN_evm.TU.Sc2ySwM_362.557 Anthoceros agrestis HOM05D002598 ORTHO05D003130 3.2e-20 102.4 199 32.7
FAN25G2153 Fragaria x ananassa HOM05D002598 ORTHO05D003130 3.2e-20 102.4 197 35.5
Sp3g31630 Schrenkiella parvula HOM05D002598 ORTHO05D003130 3.2e-20 102.4 198 34.8
MD11G1016800 Malus domestica HOM05D002598 ORTHO05D003130 4.2e-20 102.1 197 37.1
Hund18841 Selenicereus undatus HOM05D002598 ORTHO05D003130 4.2e-20 102.1 197 35.0
Medtr1g110560 Medicago truncatula HOM05D002598 ORTHO05D003130 9.3e-20 100.9 197 35.0
CARHR108750 Cardamine hirsuta HOM05D002598 ORTHO05D003130 2.7e-19 99.4 198 33.3
Thhalv10022567m.g Eutrema salsugineum HOM05D002598 ORTHO05D003130 6.0e-19 98.2 196 33.2
TPR.G18797 Trifolium pratense HOM05D002598 ORTHO05D003130 6.0e-19 98.2 199 34.7
Potri.003G213601 Populus trichocarpa HOM05D002598 ORTHO05D003130 1.3e-18 97.1 212 32.1
Sc22g0005180 Simmondsia chinensis HOM05D002598 ORTHO05D003130 1.3e-18 97.1 199 33.7
Nitab4.5_0011845g0010 Nicotiana tabacum HOM05D002598 ORTHO05D003130 1.7e-18 96.7 255 31.8
ECA233G6155 Erigeron canadensis HOM05D002598 ORTHO05D003130 2.5e-17 92.8 190 34.2
Hma1.2p1_0074F.1_g039040 Hydrangea macrophylla HOM05D002598 ORTHO05D003130 2.1e-16 89.7 216 31.0
Mapoly0061s0134 Marchantia polymorpha HOM05D002598 ORTHO05D003130 4.0e-15 85.5 144 31.9
Ah.11g042920 Amaranthus hybridus HOM05D002598 ORTHO05D003130 5.3e-15 85.1 197 31.5
SMO347G0030 Selaginella moellendorffii HOM05D002598 ORTHO05D003130 2.0e-14 83.2 204 30.4
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 5.8e-14 81.6 149 36.2
EL10Ac7g16185 Beta vulgaris HOM05D002598 ORTHO05D003130 9.9e-14 80.9 189 31.2
AUR62001631 Chenopodium quinoa HOM05D002598 ORTHO05D003130 1.3e-13 80.5 189 32.8
AUR62020148 Chenopodium quinoa HOM05D002598 ORTHO05D003130 2.9e-13 79.3 189 32.3
ATR0763G043 Amborella trichopoda HOM05D002598 ORTHO05D003130 4.9e-13 78.6 199 27.6
Zm00001eb004610 Zea mays HOM05D002598 ORTHO05D003130 1.4e-12 77.0 93 50.5
CBR_g20280 Chara braunii HOM05D002598 ORTHO05D003130 1.6e-11 73.6 198 25.3
PSO675G5612 Papaver somniferum HOM05D002598 ORTHO05D003130 1.1e-09 67.4 195 26.7
SEGI_11973 Sequoiadendron giganteum HOM05D002598 ORTHO05D003130 2.5e-09 66.2 144 27.8
MD07G1178300 Malus domestica HOM05D002598 ORTHO05D003130 7.3e-09 64.7 152 28.3
Dinv31352 Davidia involucrata HOM05D002598 ORTHO05D003130 1.3e-08 63.9 152 28.3
CDE02G2488 Ceratophyllum demersum HOM05D002598 ORTHO05D003130 2.1e-08 63.2 149 26.8
MD01G1111800 Malus domestica HOM05D002598 ORTHO05D003130 2.1e-08 63.2 152 28.3
Prupe.2G217500 Prunus persica HOM05D002598 ORTHO05D003130 2.1e-08 63.2 72 38.9
Os12g0163200 Oryza sativa ssp. japonica HOM05D002598 ORTHO05D003130 2.8e-08 62.8 189 27.0
Zm00001eb093290 Zea mays HOM05D002598 ORTHO05D003130 2.8e-08 62.8 189 24.3
CiPaw.01G275800 Carya illinoinensis HOM05D002598 ORTHO05D003130 6.2e-08 61.6 198 24.7
Lj1A920T52 Lonicera japonica HOM05D002598 ORTHO05D003130 6.2e-08 61.6 80 35.0
RcHm_v2.0_Chr5g0044521 Rosa chinensis HOM05D002598 ORTHO05D003130 6.2e-08 61.6 72 37.5
Sabra08G0030000 Salix brachista HOM05D002598 ORTHO05D003130 8.1e-08 61.2 152 28.3
FvH4_2g10660 Fragaria vesca HOM05D002598 ORTHO05D003130 1.1e-07 60.8 72 37.5
FAN20G0077 Fragaria x ananassa HOM05D002598 ORTHO05D003130 1.1e-07 60.8 72 37.5
FAN27G0297 Fragaria x ananassa HOM05D002598 ORTHO05D003130 1.1e-07 60.8 72 37.5
Sed0003300 Sechium edule HOM05D002598 ORTHO05D003130 1.1e-07 60.8 72 36.1
MELO3C025507.2 Cucumis melo HOM05D002598 ORTHO05D003130 1.4e-07 60.5 72 34.7
Potri.008G043400 Populus trichocarpa HOM05D002598 ORTHO05D003130 1.4e-07 60.5 140 29.3
GSVIVG01016319001 Vitis vinifera HOM05D002598 ORTHO05D003130 1.4e-07 60.5 152 25.7
CSS0003608 Camellia sinensis var. sinensis HOM05D002598 ORTHO05D003130 2.4e-07 59.7 152 27.0
Hma1.2p1_0453F.1_g156031 Hydrangea macrophylla HOM05D002598 ORTHO05D003130 2.4e-07 59.7 72 38.9
Sabra16G0321500 Salix brachista HOM05D002598 ORTHO05D003130 2.4e-07 59.7 152 28.3
Sabra16G0323300 Salix brachista HOM05D002598 ORTHO05D003130 2.4e-07 59.7 152 28.3
PSO063G2433 Papaver somniferum HOM05D002598 ORTHO05D003130 3.1e-07 59.3 189 25.4
CsaV3_3G019010 Cucumis sativus L. HOM05D002598 ORTHO05D003130 4.0e-07 58.9 72 33.3
Lalb_Chr06g0176371 Lupinus albus HOM05D002598 ORTHO05D003130 4.0e-07 58.9 152 27.0
TPR.G36621 Trifolium pratense HOM05D002598 ORTHO05D003130 5.3e-07 58.5 149 29.5
Medtr6g033410 Medicago truncatula HOM05D002598 ORTHO05D003130 6.9e-07 58.2 141 28.4
COL.COLO4_07091 Corchorus olitorius HOM05D002598 ORTHO05D003130 9.0e-07 57.8 72 34.7
Nn4g24880 Nelumbo nucifera HOM05D002598 ORTHO05D003130 9.0e-07 57.8 152 25.7
Ciclev10030815m.g Citrus clementina HOM05D002598 ORTHO05D003130 1.2e-06 57.4 72 37.5
MELO3C019491.2 Cucumis melo HOM05D002598 ORTHO05D003130 1.2e-06 57.4 72 34.7
DCAR_006461 Daucus carota HOM05D002598 ORTHO05D003130 1.2e-06 57.4 152 26.3
SHI08944 Sapria himalayana HOM05D002598 ORTHO05D003130 1.2e-06 57.4 149 25.5
Glyma.17G186500 Glycine max HOM05D002598 ORTHO05D003130 1.5e-06 57.0 71 35.2
MCO16G202 Micromonas commoda HOM05D002598 ORTHO05D003130 1.5e-06 57.0 143 25.9
Phvul.004G075200 Phaseolus vulgaris HOM05D002598 ORTHO05D003130 1.5e-06 57.0 197 23.9
QL08p056686 Quercus lobata HOM05D002598 ORTHO05D003130 2.0e-06 56.6 72 34.7
Cfa001600 Carpinus fangiana HOM05D002598 ORTHO05D003130 2.6e-06 56.2 72 33.3
AUR62020774 Chenopodium quinoa HOM05D002598 ORTHO05D003130 2.6e-06 56.2 72 37.5
Duzib114G1037 Durio zibethinus HOM05D002598 ORTHO05D003130 2.6e-06 56.2 152 25.0
Gorai.008G083900 Gossypium raimondii HOM05D002598 ORTHO05D003130 2.6e-06 56.2 189 23.8
Nitab4.5_0000534g0040 Nicotiana tabacum HOM05D002598 ORTHO05D003130 2.6e-06 56.2 80 36.2
EL10Ac2g03569 Beta vulgaris HOM05D002598 ORTHO05D003130 3.4e-06 55.8 72 36.1
Ca_04677_v3 Cicer arietinum L. HOM05D002598 ORTHO05D003130 3.4e-06 55.8 72 34.7
Gohir.D12G075200 Gossypium hirsutum HOM05D002598 ORTHO05D003130 3.4e-06 55.8 189 23.8
Manes.10G043700 Manihot esculenta HOM05D002598 ORTHO05D003130 3.4e-06 55.8 189 24.9
VMungo0464G1285 Vigna mungo HOM05D002598 ORTHO05D003130 4.5e-06 55.5 72 33.3
Cpa.g.sc53.27 Carica papaya HOM05D002598 ORTHO05D003130 5.8e-06 55.1 189 23.8
Glyma.05G088952 Glycine max HOM05D002598 ORTHO05D003130 5.8e-06 55.1 71 33.8
SalBow4G1919 Salvia bowleyana HOM05D002598 ORTHO05D003130 5.8e-06 55.1 72 31.9
TWI15G0990 Tripterygium wilfordii HOM05D002598 ORTHO05D003130 5.8e-06 55.1 72 33.3
AUR62027930 Chenopodium quinoa HOM05D002598 ORTHO05D003130 7.6e-06 54.7 72 37.5
Cre09.g391652 Chlamydomonas reinhardtii HOM05D002598 ORTHO05D003130 7.6e-06 54.7 199 25.1
Haze_16928 Corylus avellana HOM05D002598 ORTHO05D003130 7.6e-06 54.7 72 33.3
AL5G36660 Arabidopsis lyrata HOM05D002598 ORTHO05D003130 9.9e-06 54.3 152 25.7
SGA_v2.0_scaffold62G21413 Striga asiatica HOM05D002598 ORTHO05D003130 9.9e-06 54.3 72 33.3


User provided reference genes

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