Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb053820 Zea mays HOM05D000091 ORTHO05D017290 6.1e-36 153.7 80 100.0
Zm00001eb227590 Zea mays HOM05D000091 ORTHO05D017290 3.4e-31 137.9 79 92.4
Zm00001eb290430 Zea mays HOM05D000091 ORTHO05D017290 3.4e-31 137.9 79 93.7
Zm00001eb128400 Zea mays HOM05D000091 ORTHO05D017290 4.6e-28 127.5 76 88.2
Os01g0176400 Oryza sativa ssp. japonica HOM05D000091 ORTHO05D017290 1.2e-20 102.8 80 71.2
QL05p026979 Quercus lobata HOM05D000091 ORTHO05D005952 1.4e-16 89.4 78 57.7
MBI04_g33815_MAGBIO Magnolia biondii HOM05D000091 ORTHO05D005952 4.1e-16 87.8 78 60.3
Manes.04G119200 Manihot esculenta HOM05D000091 ORTHO05D005952 4.5e-15 84.3 78 57.7
Potri.003G058800 Populus trichocarpa HOM05D000091 ORTHO05D005952 5.9e-15 84.0 79 60.8
TAR383G0090 Trochodendron aralioides HOM05D000091 ORTHO05D005952 5.9e-15 84.0 78 59.0
CiPaw.01G242700 Carya illinoinensis HOM05D000091 ORTHO05D005952 7.7e-15 83.6 79 57.0
COL.COLO4_12861 Corchorus olitorius HOM05D000091 ORTHO05D005952 1.0e-14 83.2 78 57.7
vmacro18949 Vaccinium macrocarpon HOM05D000091 ORTHO05D005952 1.0e-14 83.2 79 62.0
Duzib235G0165 Durio zibethinus HOM05D000091 ORTHO05D005952 1.7e-14 82.4 78 56.4
Psat5g300000 Pisum sativum HOM05D000091 ORTHO05D005952 2.2e-14 82.0 79 58.2
PSO017G2535 Papaver somniferum HOM05D000091 ORTHO05D005952 3.8e-14 81.3 78 56.4
PSO170G0909 Papaver somniferum HOM05D000091 ORTHO05D005952 3.8e-14 81.3 78 56.4
TPR.G37140 Trifolium pratense HOM05D000091 ORTHO05D005952 3.8e-14 81.3 79 57.0
Os05g0178000 Oryza sativa ssp. japonica HOM05D000091 ORTHO05D005952 5.0e-14 80.9 85 60.0
Hma1.2p1_0317F.1_g123330 Hydrangea macrophylla HOM05D000091 ORTHO05D005952 6.5e-14 80.5 78 56.4
CANSAT56G3237 Cannabis sativa HOM05D000091 ORTHO05D005952 8.5e-14 80.1 81 55.6
Manes.11G049400 Manihot esculenta HOM05D000091 ORTHO05D005952 8.5e-14 80.1 78 57.7
Phvul.010G152800 Phaseolus vulgaris HOM05D000091 ORTHO05D005952 8.5e-14 80.1 78 61.5
PGR102G0217 Punica granatum HOM05D000091 ORTHO05D005952 8.5e-14 80.1 78 53.8
VMungo0331G1857 Vigna mungo HOM05D000091 ORTHO05D005952 8.5e-14 80.1 78 61.5
Eucgr.F02560 Eucalyptus grandis HOM05D000091 ORTHO05D005952 1.1e-13 79.7 79 57.0
MD17G1201600 Malus domestica HOM05D000091 ORTHO05D005952 1.1e-13 79.7 78 55.1
Hund00573 Selenicereus undatus HOM05D000091 ORTHO05D005952 1.1e-13 79.7 78 57.7
Cpa.g.sc246.9 Carica papaya HOM05D000091 ORTHO05D005952 1.5e-13 79.3 78 57.7
Thecc.06G077400 Theobroma cacao HOM05D000091 ORTHO05D005952 1.5e-13 79.3 78 53.8
Glyma.13G362200 Glycine max HOM05D000091 ORTHO05D005952 2.5e-13 78.6 78 57.7
Ciclev10025646m.g Citrus clementina HOM05D000091 ORTHO05D005952 3.2e-13 78.2 78 56.4
Duzib160G0820 Durio zibethinus HOM05D000091 ORTHO05D005952 3.2e-13 78.2 78 55.1
Haze_16489 Corylus avellana HOM05D000091 ORTHO05D005952 4.2e-13 77.8 78 53.8
Haze_16491 Corylus avellana HOM05D000091 ORTHO05D005952 4.2e-13 77.8 78 53.8
PGR102G2088 Punica granatum HOM05D000091 ORTHO05D005952 5.5e-13 77.4 78 51.3
Aqoxy7G01968 Aquilegia oxysepala HOM05D000091 ORTHO05D005952 7.2e-13 77.0 79 51.9
Lalb_Chr24g0395651 Lupinus albus HOM05D000091 ORTHO05D005952 7.2e-13 77.0 78 55.1
Nn8g39337 Nelumbo nucifera HOM05D000091 ORTHO05D005952 7.2e-13 77.0 79 53.2
arahy.Tifrunner.gnm1.ann1.E8ST2Z Arachis hypogaea HOM05D000091 ORTHO05D005952 9.4e-13 76.6 79 58.2
arahy.Tifrunner.gnm1.ann1.KX3KVT Arachis hypogaea HOM05D000091 ORTHO05D005952 9.4e-13 76.6 79 58.2
CSS0010460 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D005952 9.4e-13 76.6 78 53.8
CSS0041588 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D005952 9.4e-13 76.6 78 53.8
Gorai.011G079500 Gossypium raimondii HOM05D000091 ORTHO05D005952 9.4e-13 76.6 78 51.3
Gohir.D10G073700 Gossypium hirsutum HOM05D000091 ORTHO05D005952 1.2e-12 76.3 78 51.3
Atru.chr1.3162 Acer truncatum HOM05D000091 ORTHO05D005952 1.6e-12 75.9 79 55.7
MBI01_g15491_MAGBIO Magnolia biondii HOM05D000091 ORTHO05D005952 1.6e-12 75.9 79 53.2
Ca_01095_v3 Cicer arietinum L. HOM05D000091 ORTHO05D005952 2.1e-12 75.5 79 54.4
Cc04_g03790 Coffea canephora HOM05D000091 ORTHO05D005952 2.1e-12 75.5 78 53.8
Gohir.A10G077900 Gossypium hirsutum HOM05D000091 ORTHO05D005952 2.1e-12 75.5 78 50.0
Medtr2g102730 Medicago truncatula HOM05D000091 ORTHO05D005952 2.1e-12 75.5 79 54.4
Peaxi162Scf00015g00522 Petunia axillaris HOM05D000091 ORTHO05D005952 2.1e-12 75.5 78 52.6
VMungo1080G1045 Vigna mungo HOM05D000091 ORTHO05D005952 2.1e-12 75.5 78 55.1
Cfa002030 Carpinus fangiana HOM05D000091 ORTHO05D005952 3.6e-12 74.7 79 54.4
Lj9A504T62 Lonicera japonica HOM05D000091 ORTHO05D005952 4.7e-12 74.3 80 53.8
Lj3g0023473 Lotus japonicus HOM05D000091 ORTHO05D005952 4.7e-12 74.3 76 53.9
Rhsim08G0217700 Rhododendron simsii HOM05D000091 ORTHO05D005952 4.7e-12 74.3 78 55.1
CiPaw.02G153700 Carya illinoinensis HOM05D000091 ORTHO05D005952 6.1e-12 73.9 79 51.9
THA.LOC104815544 Tarenaya hassleriana HOM05D000091 ORTHO05D005952 6.1e-12 73.9 80 51.2
Glyma.07G033200 Glycine max HOM05D000091 ORTHO05D005952 1.4e-11 72.8 78 57.7
Sabra06G0182500 Salix brachista HOM05D000091 ORTHO05D005952 1.4e-11 72.8 78 56.4
FvH4_6g30650 Fragaria vesca HOM05D000091 ORTHO05D005952 2.3e-11 72.0 79 50.6
FAN05G0863 Fragaria x ananassa HOM05D000091 ORTHO05D005952 2.3e-11 72.0 79 50.6
FAN09G4038 Fragaria x ananassa HOM05D000091 ORTHO05D005952 2.3e-11 72.0 79 50.6
FAN14G4364 Fragaria x ananassa HOM05D000091 ORTHO05D005952 2.3e-11 72.0 79 50.6
Glyma.08G209000 Glycine max HOM05D000091 ORTHO05D005952 3.0e-11 71.6 78 55.1
Lj5A66T60 Lonicera japonica HOM05D000091 ORTHO05D005952 3.0e-11 71.6 79 53.2
Phvul.005G173900 Phaseolus vulgaris HOM05D000091 ORTHO05D005952 3.0e-11 71.6 78 53.8
Potri.001G175400 Populus trichocarpa HOM05D000091 ORTHO05D005952 3.0e-11 71.6 78 52.6
Prupe.3G077500 Prunus persica HOM05D000091 ORTHO05D005952 4.0e-11 71.2 78 50.0
Aa31LG8G2810 Aethionema arabicum HOM05D000091 ORTHO05D005952 5.2e-11 70.9 78 48.7
MELO3C023387.2 Cucumis melo HOM05D000091 ORTHO05D005952 5.2e-11 70.9 81 55.6
CsaV3_7G032790 Cucumis sativus L. HOM05D000091 ORTHO05D005952 5.2e-11 70.9 81 55.6
Sabra01G0137100 Salix brachista HOM05D000091 ORTHO05D005952 6.7e-11 70.5 78 53.8
Sed0001851 Sechium edule HOM05D000091 ORTHO05D005952 6.7e-11 70.5 81 50.6
FAN02G0946 Fragaria x ananassa HOM05D000091 ORTHO05D005952 8.8e-11 70.1 79 50.6
Oeu001142.1 Olea europaea HOM05D000091 ORTHO05D005952 2.0e-10 68.9 79 50.6
Oeu001144.1 Olea europaea HOM05D000091 ORTHO05D005952 2.0e-10 68.9 79 50.6
ClCG09G002530 Citrullus lanatus HOM05D000091 ORTHO05D005952 3.3e-10 68.2 81 53.1
PSO423G0069 Papaver somniferum HOM05D000091 ORTHO05D005952 3.3e-10 68.2 78 48.7
Sc10g0007520 Simmondsia chinensis HOM05D000091 ORTHO05D005952 3.3e-10 68.2 81 50.6
CAN.G438.94 Capsicum annuum HOM05D000091 ORTHO05D005952 4.4e-10 67.8 82 47.6
TWI18G0784 Tripterygium wilfordii HOM05D000091 ORTHO05D005952 5.7e-10 67.4 78 48.7
Sabra03G0033600 Salix brachista HOM05D000091 ORTHO05D005952 9.7e-10 66.6 78 51.3
RcHm_v2.0_Chr2g0137051 Rosa chinensis HOM05D000091 ORTHO05D005952 1.3e-09 66.2 79 48.1
Lalb_Chr22g0351081 Lupinus albus HOM05D000091 ORTHO05D005952 1.7e-09 65.9 78 46.2
Carub.0001s4186 Capsella rubella HOM05D000091 ORTHO05D005952 2.2e-09 65.5 87 46.0
Lj3g0026273 Lotus japonicus HOM05D000091 ORTHO05D005952 2.2e-09 65.5 77 53.2
GSVIVG01017210001 Vitis vinifera HOM05D000091 ORTHO05D005952 2.2e-09 65.5 63 57.1
Nitab4.5_0004817g0010 Nicotiana tabacum HOM05D000091 ORTHO05D005952 2.8e-09 65.1 83 50.6
AT1G52770 Arabidopsis thaliana HOM05D000091 ORTHO05D005952 3.7e-09 64.7 85 45.9
Solyc03g119960.3 Solanum lycopersicum HOM05D000091 ORTHO05D005952 3.7e-09 64.7 81 50.6
AL1G61090 Arabidopsis lyrata HOM05D000091 ORTHO05D005952 6.3e-09 63.9 85 47.1
Lalb_Chr06g0171101 Lupinus albus HOM05D000091 ORTHO05D005952 6.3e-09 63.9 77 49.4
Nitab4.5_0000410g0390 Nicotiana tabacum HOM05D000091 ORTHO05D005952 8.2e-09 63.5 83 49.4
Sopen03g038840 Solanum pennellii HOM05D000091 ORTHO05D005952 8.2e-09 63.5 81 49.4
Thhalv10011482m.g Eutrema salsugineum HOM05D000091 ORTHO05D005952 1.4e-08 62.8 80 43.8
Glyma.15G011600 Glycine max HOM05D000091 ORTHO05D005952 1.4e-08 62.8 77 46.8
Aa31LG10G2270 Aethionema arabicum HOM05D000091 ORTHO05D005952 1.8e-08 62.4 83 44.6
AUR62011593 Chenopodium quinoa HOM05D000091 ORTHO05D005952 2.4e-08 62.0 67 50.7
AUR62016407 Chenopodium quinoa HOM05D000091 ORTHO05D005952 2.4e-08 62.0 67 50.7
DCAR_016248 Daucus carota HOM05D000091 ORTHO05D005952 3.1e-08 61.6 79 48.1
PGSC0003DMG400005613 Solanum tuberosum HOM05D000091 ORTHO05D005952 3.1e-08 61.6 81 46.9
EL10Ac9g21965 Beta vulgaris HOM05D000091 ORTHO05D005952 9.1e-08 60.1 66 50.0
Thhalv10022354m.g Eutrema salsugineum HOM05D000091 ORTHO05D005952 9.1e-08 60.1 82 48.8
BcaB06g29596 Brassica carinata HOM05D000091 ORTHO05D005952 1.2e-07 59.7 80 47.5
CARHR090650 Cardamine hirsuta HOM05D000091 ORTHO05D005952 1.2e-07 59.7 77 45.5
SGA_v2.0_scaffold5G02646 Striga asiatica HOM05D000091 ORTHO05D005952 1.6e-07 59.3 75 49.3
AL3G28190 Arabidopsis lyrata HOM05D000091 ORTHO05D005952 2.0e-07 58.9 82 43.9
BcaC05g28953 Brassica carinata HOM05D000091 ORTHO05D005952 2.0e-07 58.9 81 45.7
A05p33820 Brassica napus HOM05D000091 ORTHO05D005952 2.0e-07 58.9 81 45.7
BolC5t33832H Brassica oleracea HOM05D000091 ORTHO05D005952 2.0e-07 58.9 81 45.7
BraA05t22204Z Brassica rapa HOM05D000091 ORTHO05D005952 2.0e-07 58.9 81 45.7
Dinv38076 Davidia involucrata HOM05D000091 ORTHO05D005952 2.0e-07 58.9 84 45.2
Carub.0003s1531 Capsella rubella HOM05D000091 ORTHO05D005952 3.5e-07 58.2 82 46.3
Psat7g254400 Pisum sativum HOM05D000091 ORTHO05D005952 4.5e-07 57.8 82 46.3
Sp3g13850 Schrenkiella parvula HOM05D000091 ORTHO05D005952 5.9e-07 57.4 83 47.0
Os01g0943950 Oryza sativa ssp. japonica HOM05D000091 ORTHO05D017290 7.7e-07 57.0 42 71.4
Hund06593 Selenicereus undatus HOM05D000091 ORTHO05D005952 7.7e-07 57.0 78 44.9
Ca_07174_v3 Cicer arietinum L. HOM05D000091 ORTHO05D005952 1.0e-06 56.6 81 44.4
SalBow2G0197 Salvia bowleyana HOM05D000091 ORTHO05D005952 1.0e-06 56.6 78 44.9
TPR.G38634 Trifolium pratense HOM05D000091 ORTHO05D005952 1.0e-06 56.6 82 46.3
A03p39380 Brassica napus HOM05D000091 ORTHO05D005952 1.3e-06 56.2 77 41.6
C03p47760 Brassica napus HOM05D000091 ORTHO05D005952 1.3e-06 56.2 77 42.9
BolC3t17053H Brassica oleracea HOM05D000091 ORTHO05D005952 1.3e-06 56.2 77 42.9
BraA03t13087Z Brassica rapa HOM05D000091 ORTHO05D005952 1.3e-06 56.2 77 41.6
Medtr4g011530 Medicago truncatula HOM05D000091 ORTHO05D005952 1.3e-06 56.2 82 46.3
AT3G15570 Arabidopsis thaliana HOM05D000091 ORTHO05D005952 2.9e-06 55.1 82 43.9
BcaC01g03868 Brassica carinata HOM05D000091 ORTHO05D005952 2.9e-06 55.1 77 42.9
Migut.I00815 Erythranthe guttata HOM05D000091 ORTHO05D005952 2.9e-06 55.1 74 45.9
Sp1g39340 Schrenkiella parvula HOM05D000091 ORTHO05D005952 5.0e-06 54.3 80 41.2
Lsat_1_v5_gn_4_104861 Lactuca sativa HOM05D000091 ORTHO05D005952 6.5e-06 53.9 79 40.5
Ah.01g006010 Amaranthus hybridus HOM05D000091 ORTHO05D005952 8.5e-06 53.5 69 43.5
A06p01630 Brassica napus HOM05D000091 ORTHO05D005952 8.5e-06 53.5 80 40.0
BraA06t23379Z Brassica rapa HOM05D000091 ORTHO05D005952 8.5e-06 53.5 80 40.0
CARHR042930 Cardamine hirsuta HOM05D000091 ORTHO05D005952 8.5e-06 53.5 85 37.6


User provided reference genes

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