Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 3.6e-164 581.6 318 100.0
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 1.0e-94 350.9 355 60.6
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 1.4e-30 137.9 354 35.6
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 1.8e-30 137.5 337 38.0
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 2.3e-30 137.1 341 37.5
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 2.3e-30 137.1 354 35.3
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.0e-30 136.3 398 36.7
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 5.2e-30 136.0 331 40.8
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 8.9e-30 135.2 331 40.5
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 8.9e-30 135.2 379 36.4
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 2.2e-28 130.6 350 36.9
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 2.2e-28 130.6 355 35.5
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 3.7e-28 129.8 331 40.2
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 6.3e-28 129.0 363 35.5
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 8.3e-28 128.6 353 34.6
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 1.2e-26 124.8 360 37.2
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 1.2e-26 124.8 343 36.2
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 1.6e-26 124.4 357 35.9
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 2.7e-26 123.6 369 33.6
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 3.5e-26 123.2 359 34.5
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 4.5e-26 122.9 350 36.3
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 4.5e-26 122.9 329 34.0
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 4.5e-26 122.9 367 36.2
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 1.0e-25 121.7 372 33.9
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 1.0e-25 121.7 359 38.7
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 1.7e-25 120.9 357 36.7
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 1.7e-25 120.9 345 33.6
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 2.3e-25 120.6 365 34.5
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 2.3e-25 120.6 350 36.0
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 2.9e-25 120.2 355 34.4
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 3.9e-25 119.8 346 35.3
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 3.9e-25 119.8 350 36.0
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 5.0e-25 119.4 351 34.5
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 1.5e-24 117.9 325 35.7
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.5e-24 117.9 356 34.3
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 1.5e-24 117.9 371 35.0
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 1.9e-24 117.5 328 33.2
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 1.9e-24 117.5 351 36.2
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 1.9e-24 117.5 334 34.7
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 2.5e-24 117.1 363 34.2
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 7.3e-24 115.5 369 33.9
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 9.5e-24 115.2 355 33.2
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 1.6e-23 114.4 371 35.0
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 6.1e-23 112.5 343 33.5
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 8.0e-23 112.1 359 33.4
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 1.0e-22 111.7 325 34.8
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 1.0e-22 111.7 368 33.2
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 1.4e-22 111.3 371 32.9
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 1.8e-22 110.9 353 34.0
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 2.3e-22 110.5 370 33.5
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 2.3e-22 110.5 351 35.0
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 3.1e-22 110.2 365 32.6
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 4.0e-22 109.8 422 31.3
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 8.9e-22 108.6 358 31.3
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 1.2e-21 108.2 362 35.1
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.5e-21 107.8 356 32.6
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 4.4e-21 106.3 367 33.2
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 5.8e-21 105.9 371 31.3
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 9.8e-21 105.1 362 34.5
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 9.8e-21 105.1 349 34.7
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 1.7e-20 104.4 191 42.9
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 2.2e-20 104.0 347 32.6
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 8.3e-20 102.1 401 30.7
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 8.3e-20 102.1 361 33.8
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 1.9e-19 100.9 331 32.6
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 4.1e-19 99.8 345 32.2
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 4.1e-19 99.8 345 32.2
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 7.0e-19 99.0 346 32.7
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 9.2e-19 98.6 373 31.1
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 2.0e-18 97.4 348 32.5
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 2.0e-18 97.4 405 30.6
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 3.5e-18 96.7 353 32.6
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 3.5e-18 96.7 353 32.6
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 4.6e-18 96.3 370 31.1
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 7.8e-18 95.5 187 40.6
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 3.9e-17 93.2 186 39.8
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 5.0e-17 92.8 322 33.5
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 5.0e-17 92.8 349 31.8
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 6.6e-17 92.4 381 31.2
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 9.5e-16 88.6 351 32.2
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 3.6e-15 86.7 346 32.7
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 8.0e-15 85.5 289 34.9
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 8.0e-15 85.5 308 32.1
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 1.1e-14 85.1 340 32.1
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 4.0e-14 83.2 343 31.5
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 5.2e-14 82.8 297 32.3
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 5.2e-14 82.8 281 31.0
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 1.2e-13 81.6 342 31.0
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 3.4e-13 80.1 289 30.1
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 7.5e-13 79.0 347 30.8
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 2.2e-12 77.4 186 37.1
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 1.1e-11 75.1 370 28.9
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 3.2e-11 73.6 347 29.1
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 5.4e-11 72.8 275 31.3
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 7.0e-11 72.4 322 31.4
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 7.8e-10 68.9 251 31.1
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 3.0e-09 67.0 149 38.3
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 3.3e-08 63.5 229 31.0
ATR0665G137 Amborella trichopoda HOM05D006327 ORTHO05D007952 1.2e-07 61.6 145 36.6
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 2.1e-07 60.8 292 29.5
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 8.1e-07 58.9 373 27.1
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 1.8e-06 57.8 335 27.2


User provided reference genes

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