Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb053370 Zea mays HOM05D004158 ORTHO05D004884 5.9e-103 377.5 182 100.0
Os03g0684500 Oryza sativa ssp. japonica HOM05D004158 ORTHO05D004884 1.0e-70 270.4 178 76.4
Nn6g35104 Nelumbo nucifera HOM05D004158 ORTHO05D004884 8.3e-49 197.6 154 58.4
CSS0041510 Camellia sinensis var. sinensis HOM05D004158 ORTHO05D004884 3.2e-48 195.7 156 61.5
FAN10G3528 Fragaria x ananassa HOM05D004158 ORTHO05D004884 4.1e-48 195.3 152 59.2
Lsat_1_v5_gn_9_70320 Lactuca sativa HOM05D004158 ORTHO05D004884 7.0e-48 194.5 159 55.3
Aqoxy1G01001 Aquilegia oxysepala HOM05D004158 ORTHO05D004884 9.2e-48 194.1 158 57.6
Actinidia18561 Actinidia chinensis HOM05D004158 ORTHO05D004884 1.6e-47 193.4 160 56.9
Aa31LG11G5370 Aethionema arabicum HOM05D004158 ORTHO05D004884 1.6e-47 193.4 166 57.2
FvH4_7g07030 Fragaria vesca HOM05D004158 ORTHO05D004884 2.0e-47 193.0 126 65.9
FAN01G2366 Fragaria x ananassa HOM05D004158 ORTHO05D004884 2.7e-47 192.6 152 57.9
Medtr1g090920 Medicago truncatula HOM05D004158 ORTHO05D004884 2.7e-47 192.6 157 57.3
Cc02_g10420 Coffea canephora HOM05D004158 ORTHO05D004884 3.5e-47 192.2 150 62.7
RcHm_v2.0_Chr1g0336981 Rosa chinensis HOM05D004158 ORTHO05D004884 3.5e-47 192.2 125 67.2
TAR623G1307 Trochodendron aralioides HOM05D004158 ORTHO05D004884 3.5e-47 192.2 157 57.3
MSTRG.9120 Avicennia marina HOM05D004158 ORTHO05D004884 7.8e-47 191.0 122 67.2
Dinv20856 Davidia involucrata HOM05D004158 ORTHO05D004884 7.8e-47 191.0 125 67.2
Lj5g0005466 Lotus japonicus HOM05D004158 ORTHO05D004884 7.8e-47 191.0 125 65.6
TPR.G21919 Trifolium pratense HOM05D004158 ORTHO05D004884 7.8e-47 191.0 125 65.6
THA.LOC104816449 Tarenaya hassleriana HOM05D004158 ORTHO05D004884 1.0e-46 190.7 164 54.9
Eucgr.G02723 Eucalyptus grandis HOM05D004158 ORTHO05D004884 1.7e-46 189.9 152 63.8
Phvul.007G144400 Phaseolus vulgaris HOM05D004158 ORTHO05D004884 1.7e-46 189.9 134 63.4
Potri.010G232700 Populus trichocarpa HOM05D004158 ORTHO05D004884 1.7e-46 189.9 122 67.2
Prupe.2G096900 Prunus persica HOM05D004158 ORTHO05D004884 1.7e-46 189.9 122 68.0
MSTRG.406 Avicennia marina HOM05D004158 ORTHO05D004884 2.3e-46 189.5 157 58.0
FAN06G0479 Fragaria x ananassa HOM05D004158 ORTHO05D004884 2.3e-46 189.5 152 57.9
TWI38G1342 Tripterygium wilfordii HOM05D004158 ORTHO05D004884 2.3e-46 189.5 125 64.8
VMungo0720G2210 Vigna mungo HOM05D004158 ORTHO05D004884 3.0e-46 189.1 156 55.1
Cpa.g.sc128.66 Carica papaya HOM05D004158 ORTHO05D004884 5.0e-46 188.3 147 59.2
PSO384G3917 Papaver somniferum HOM05D004158 ORTHO05D004884 5.0e-46 188.3 155 56.1
Rhsim03G0110500 Rhododendron simsii HOM05D004158 ORTHO05D004884 5.0e-46 188.3 153 58.2
Aa31LG9G6390 Aethionema arabicum HOM05D004158 ORTHO05D004884 6.6e-46 188.0 163 56.4
MD07G1076200 Malus domestica HOM05D004158 ORTHO05D004884 6.6e-46 188.0 157 56.7
Sp1g23120 Schrenkiella parvula HOM05D004158 ORTHO05D004884 6.6e-46 188.0 163 54.0
Hund06746 Selenicereus undatus HOM05D004158 ORTHO05D004884 6.6e-46 188.0 130 62.3
HanXRQChr13g0404601 Helianthus annuus HOM05D004158 ORTHO05D004884 8.6e-46 187.6 169 52.7
Carub.0006s0343 Capsella rubella HOM05D004158 ORTHO05D004884 1.1e-45 187.2 176 51.7
Ca_10468_v3 Cicer arietinum L. HOM05D004158 ORTHO05D004884 1.1e-45 187.2 125 64.0
DCAR_019047 Daucus carota HOM05D004158 ORTHO05D004884 1.1e-45 187.2 151 55.0
Migut.F00926 Erythranthe guttata HOM05D004158 ORTHO05D004884 1.1e-45 187.2 125 64.0
Nn2g13950 Nelumbo nucifera HOM05D004158 ORTHO05D004884 1.1e-45 187.2 160 53.8
Atru.chr12.930 Acer truncatum HOM05D004158 ORTHO05D004884 1.5e-45 186.8 122 63.1
CiPaw.14G027300 Carya illinoinensis HOM05D004158 ORTHO05D004884 1.5e-45 186.8 166 54.8
ClCG05G021490 Citrullus lanatus HOM05D004158 ORTHO05D004884 1.5e-45 186.8 147 59.9
Glyma.10G200700 Glycine max HOM05D004158 ORTHO05D004884 1.5e-45 186.8 125 64.8
Potri.008G028900 Populus trichocarpa HOM05D004158 ORTHO05D004884 1.5e-45 186.8 122 66.4
GSVIVG01034672001 Vitis vinifera HOM05D004158 ORTHO05D004884 1.5e-45 186.8 153 55.6
MD02G1240900 Malus domestica HOM05D004158 ORTHO05D004884 1.9e-45 186.4 158 56.3
Peaxi162Scf00398g00720 Petunia axillaris HOM05D004158 ORTHO05D004884 2.5e-45 186.0 152 57.2
Solyc05g055420.4 Solanum lycopersicum HOM05D004158 ORTHO05D004884 2.5e-45 186.0 171 51.5
BcaC06g32159 Brassica carinata HOM05D004158 ORTHO05D004884 3.3e-45 185.7 163 52.1
Lj3A934G31 Lonicera japonica HOM05D004158 ORTHO05D004884 3.3e-45 185.7 124 65.3
Peaxi162Scf00004g00010 Petunia axillaris HOM05D004158 ORTHO05D004884 3.3e-45 185.7 178 51.7
SalBow6G6612 Salvia bowleyana HOM05D004158 ORTHO05D004884 3.3e-45 185.7 123 64.2
Glyma.20G189900 Glycine max HOM05D004158 ORTHO05D004884 4.3e-45 185.3 156 54.5
Psat6g176040 Pisum sativum HOM05D004158 ORTHO05D004884 4.3e-45 185.3 156 55.1
QL04p040389 Quercus lobata HOM05D004158 ORTHO05D004884 4.3e-45 185.3 122 65.6
CiPaw.13G034700 Carya illinoinensis HOM05D004158 ORTHO05D004884 5.6e-45 184.9 148 56.8
Nitab4.5_0003408g0110 Nicotiana tabacum HOM05D004158 ORTHO05D004884 5.6e-45 184.9 163 54.0
PSO339G6367 Papaver somniferum HOM05D004158 ORTHO05D004884 5.6e-45 184.9 155 55.5
Sopen05g033860 Solanum pennellii HOM05D004158 ORTHO05D004884 5.6e-45 184.9 180 50.0
PGSC0003DMG400023377 Solanum tuberosum HOM05D004158 ORTHO05D004884 5.6e-45 184.9 180 50.0
unitig_748.g8777 Utricularia gibba HOM05D004158 ORTHO05D004884 5.6e-45 184.9 122 65.6
CARHR208770 Cardamine hirsuta HOM05D004158 ORTHO05D004884 7.3e-45 184.5 161 53.4
ECA232G3252 Erigeron canadensis HOM05D004158 ORTHO05D004884 9.5e-45 184.1 122 65.6
vmacro07210 Vaccinium macrocarpon HOM05D004158 ORTHO05D004884 9.5e-45 184.1 158 57.6
HanXRQChr09g0247121 Helianthus annuus HOM05D004158 ORTHO05D004884 1.2e-44 183.7 162 51.2
SGA_v2.0_scaffold13G06506 Striga asiatica HOM05D004158 ORTHO05D004884 1.2e-44 183.7 159 54.7
BraA02t04815Z Brassica rapa HOM05D004158 ORTHO05D004884 1.6e-44 183.3 163 52.1
Nitab4.5_0000096g0160 Nicotiana tabacum HOM05D004158 ORTHO05D004884 1.6e-44 183.3 163 54.0
Sabra10G0180500 Salix brachista HOM05D004158 ORTHO05D004884 1.6e-44 183.3 122 65.6
Sopen11g003630 Solanum pennellii HOM05D004158 ORTHO05D004884 1.6e-44 183.3 151 57.6
A10p31590 Brassica napus HOM05D004158 ORTHO05D004884 2.1e-44 183.0 163 50.9
C09p72260 Brassica napus HOM05D004158 ORTHO05D004884 2.1e-44 183.0 163 50.9
BraA10t45205Z Brassica rapa HOM05D004158 ORTHO05D004884 2.1e-44 183.0 163 50.9
Gohir.D05G291601 Gossypium hirsutum HOM05D004158 ORTHO05D004884 2.1e-44 183.0 122 64.8
Gorai.009G307300 Gossypium raimondii HOM05D004158 ORTHO05D004884 2.1e-44 183.0 122 64.8
Manes.06G020900 Manihot esculenta HOM05D004158 ORTHO05D004884 2.1e-44 183.0 122 63.9
PSO063G3822 Papaver somniferum HOM05D004158 ORTHO05D004884 2.1e-44 183.0 155 56.1
Solyc11g007770.2 Solanum lycopersicum HOM05D004158 ORTHO05D004884 2.1e-44 183.0 151 57.0
PGSC0003DMG400027356 Solanum tuberosum HOM05D004158 ORTHO05D004884 2.1e-44 183.0 151 57.6
AL6G14142 Arabidopsis lyrata HOM05D004158 ORTHO05D004884 2.8e-44 182.6 163 52.8
CAN.G135.48 Capsicum annuum HOM05D004158 ORTHO05D004884 2.8e-44 182.6 151 57.6
COL.COLO4_07610 Corchorus olitorius HOM05D004158 ORTHO05D004884 2.8e-44 182.6 122 63.1
CsaV3_5G035760 Cucumis sativus L. HOM05D004158 ORTHO05D004884 2.8e-44 182.6 147 57.8
SalBow4G0446 Salvia bowleyana HOM05D004158 ORTHO05D004884 2.8e-44 182.6 125 63.2
BcaC03g12948 Brassica carinata HOM05D004158 ORTHO05D004884 3.6e-44 182.2 161 52.2
Cfa011201 Carpinus fangiana HOM05D004158 ORTHO05D004884 3.6e-44 182.2 145 57.2
arahy.Tifrunner.gnm1.ann1.16QXFL Arachis hypogaea HOM05D004158 ORTHO05D004884 4.7e-44 181.8 125 62.4
CDE05G1361 Ceratophyllum demersum HOM05D004158 ORTHO05D004884 4.7e-44 181.8 122 63.9
Ciclev10030719m.g Citrus clementina HOM05D004158 ORTHO05D004884 4.7e-44 181.8 122 63.1
Migut.F01667 Erythranthe guttata HOM05D004158 ORTHO05D004884 4.7e-44 181.8 159 53.5
Lalb_Chr02g0151231 Lupinus albus HOM05D004158 ORTHO05D004884 4.7e-44 181.8 125 63.2
Sc25g0001340 Simmondsia chinensis HOM05D004158 ORTHO05D004884 4.7e-44 181.8 163 51.5
AT5G04500 Arabidopsis thaliana HOM05D004158 ORTHO05D004884 6.2e-44 181.4 163 51.5
BcaB05g21757 Brassica carinata HOM05D004158 ORTHO05D004884 6.2e-44 181.4 163 51.5
Duzib128G0995 Durio zibethinus HOM05D004158 ORTHO05D004884 6.2e-44 181.4 122 63.9
BolC2t06153H Brassica oleracea HOM05D004158 ORTHO05D004884 8.1e-44 181.0 163 51.5
PGR142G1291 Punica granatum HOM05D004158 ORTHO05D004884 8.1e-44 181.0 125 62.4
Hund06745 Selenicereus undatus HOM05D004158 ORTHO05D004884 8.1e-44 181.0 163 52.8
arahy.Tifrunner.gnm1.ann1.SHL6Z6 Arachis hypogaea HOM05D004158 ORTHO05D004884 1.1e-43 180.6 125 61.6
Gohir.A05G290400 Gossypium hirsutum HOM05D004158 ORTHO05D004884 1.1e-43 180.6 122 63.9
Hma1.2p1_0492F.1_g164760 Hydrangea macrophylla HOM05D004158 ORTHO05D004884 1.4e-43 180.3 156 53.2
Sed0009937 Sechium edule HOM05D004158 ORTHO05D004884 1.4e-43 180.3 156 53.8
BolC9t59970H Brassica oleracea HOM05D004158 ORTHO05D004884 1.8e-43 179.9 163 49.7
Duzib114G0557 Durio zibethinus HOM05D004158 ORTHO05D004884 1.8e-43 179.9 122 63.9
Lalb_Chr06g0170091 Lupinus albus HOM05D004158 ORTHO05D004884 1.8e-43 179.9 125 60.8
Nitab4.5_0007922g0020 Nicotiana tabacum HOM05D004158 ORTHO05D004884 1.8e-43 179.9 163 53.4
Sc09g0005790 Simmondsia chinensis HOM05D004158 ORTHO05D004884 1.8e-43 179.9 167 52.1
Thecc.10G093600 Theobroma cacao HOM05D004158 ORTHO05D004884 1.8e-43 179.9 122 63.1
CDE05G0220 Ceratophyllum demersum HOM05D004158 ORTHO05D004884 2.3e-43 179.5 122 61.5
AUR62031975 Chenopodium quinoa HOM05D004158 ORTHO05D004884 3.1e-43 179.1 176 48.9
C02p01960 Brassica napus HOM05D004158 ORTHO05D004884 4.0e-43 178.7 163 50.3
PSO063G5270 Papaver somniferum HOM05D004158 ORTHO05D004884 5.2e-43 178.3 154 55.2
PSO339G4003 Papaver somniferum HOM05D004158 ORTHO05D004884 5.2e-43 178.3 154 55.2
SGA_v2.0_scaffold62G21518 Striga asiatica HOM05D004158 ORTHO05D004884 5.2e-43 178.3 124 62.9
Aqoxy2G01507 Aquilegia oxysepala HOM05D004158 ORTHO05D004884 6.8e-43 177.9 152 53.9
AUR62022268 Chenopodium quinoa HOM05D004158 ORTHO05D004884 6.8e-43 177.9 176 48.3
MBI04_g34128_MAGBIO Magnolia biondii HOM05D004158 ORTHO05D004884 6.8e-43 177.9 146 57.5
Lalb_Chr21g0313121 Lupinus albus HOM05D004158 ORTHO05D004884 8.9e-43 177.6 125 60.0
ATR0665G113 Amborella trichopoda HOM05D004158 ORTHO05D004884 1.2e-42 177.2 157 53.5
HPP92_019597 Vanilla planifolia HOM05D004158 ORTHO05D004884 1.2e-42 177.2 179 50.3
Lsat_1_v5_gn_8_22880 Lactuca sativa HOM05D004158 ORTHO05D004884 1.5e-42 176.8 163 52.1
HanXRQChr08g0218041 Helianthus annuus HOM05D004158 ORTHO05D004884 2.0e-42 176.4 125 61.6
Nitab4.5_0000593g0240 Nicotiana tabacum HOM05D004158 ORTHO05D004884 4.4e-42 175.3 163 52.8
MD02G1240800 Malus domestica HOM05D004158 ORTHO05D004884 7.5e-42 174.5 175 51.4
Sabra08G0019400 Salix brachista HOM05D004158 ORTHO05D004884 1.7e-41 173.3 146 56.2
ATR0749G020 Amborella trichopoda HOM05D004158 ORTHO05D004884 2.9e-41 172.6 154 54.5
Pp3c16_2210 Physcomitrium patens HOM05D004158 ORTHO05D004884 2.9e-41 172.6 152 53.9
SHI21307 Sapria himalayana HOM05D004158 ORTHO05D004884 3.7e-41 172.2 158 51.3
Ah.04g163550 Amaranthus hybridus HOM05D004158 ORTHO05D004884 4.9e-41 171.8 159 50.3
Zm00001eb294280 Zea mays HOM05D004158 ORTHO05D004884 4.9e-41 171.8 125 59.2
Pp3c6_28590 Physcomitrium patens HOM05D004158 ORTHO05D004884 8.3e-41 171.0 158 51.9
Oeu059840.1 Olea europaea HOM05D004158 ORTHO05D004884 1.9e-40 169.9 185 47.6
Zm00001eb342340 Zea mays HOM05D004158 ORTHO05D004884 2.4e-40 169.5 125 57.6
MELO3C012377.2 Cucumis melo HOM05D004158 ORTHO05D004884 5.4e-40 168.3 177 48.6
Os05g0540000 Oryza sativa ssp. japonica HOM05D004158 ORTHO05D004884 9.2e-40 167.5 160 50.0
Haze_02645 Corylus avellana HOM05D004158 ORTHO05D004884 1.6e-39 166.8 164 49.4
CAN.G1891.11 Capsicum annuum HOM05D004158 ORTHO05D004884 2.1e-39 166.4 179 48.0
Pp3c5_3040 Physcomitrium patens HOM05D004158 ORTHO05D004884 3.0e-38 162.5 125 57.6
SMO367G0291 Selaginella moellendorffii HOM05D004158 ORTHO05D004884 8.6e-38 161.0 150 49.3
AagrBONN_evm.TU.Sc2ySwM_368.1503 Anthoceros agrestis HOM05D004158 ORTHO05D004884 1.5e-37 160.2 159 51.6
Mapoly0001s0350 Marchantia polymorpha HOM05D004158 ORTHO05D004884 4.3e-37 158.7 122 54.9
EL10Ac4g08627 Beta vulgaris HOM05D004158 ORTHO05D004884 1.3e-33 147.1 158 46.2
ECA233G5256 Erigeron canadensis HOM05D004158 ORTHO05D004884 2.3e-30 136.3 89 61.8
MBI01_g11032_MAGBIO Magnolia biondii HOM05D004158 ORTHO05D004884 1.5e-29 133.7 98 62.2
Thhalv10012710m.g Eutrema salsugineum HOM05D004158 ORTHO05D004884 1.1e-24 117.5 163 39.9
unitig_746.g26628 Utricularia gibba HOM05D004158 ORTHO05D004884 1.1e-24 117.5 82 57.3
CAN.G765.11 Capsicum annuum HOM05D004158 ORTHO05D004884 2.1e-23 113.2 83 59.0
Manes.10G053900 Manihot esculenta HOM05D004158 ORTHO05D004884 8.1e-20 101.3 78 59.0
RcHm_v2.0_Chr1g0359101 Rosa chinensis HOM05D004158 ORTHO05D004884 1.5e-18 97.1 84 57.1
Oeu047512.1 Olea europaea HOM05D004158 ORTHO05D004884 4.2e-16 89.0 55 65.5
MSTRG.27512 Avicennia marina HOM05D004158 ORTHO05D004884 2.5e-13 79.7 55 58.2
MBI01_g11031_MAGBIO Magnolia biondii HOM05D004158 ORTHO05D004884 2.7e-07 59.7 62 48.4
Oeu032438.1 Olea europaea HOM05D004158 ORTHO05D004884 1.0e-06 57.8 37 59.5


User provided reference genes

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