Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb053260 Zea mays HOM05D005988 ORTHO05D007392 3.1e-44 181.4 91 100.0
Zm00001eb053240 Zea mays HOM05D005988 ORTHO05D007392 2.6e-43 178.3 91 97.8
Zm00001eb422590 Zea mays HOM05D005988 ORTHO05D007392 2.0e-11 72.4 36 94.4
Zm00001eb290200 Zea mays HOM05D005988 ORTHO05D007392 7.7e-11 70.5 36 94.4
Os03g0685900 Oryza sativa ssp. japonica HOM05D005988 ORTHO05D007392 9.4e-09 63.5 36 77.8
Aa31sc377G10 Aethionema arabicum HOM05D005988 ORTHO05D007392 1.0e-07 60.1 36 72.2
Gohir.D02G149200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 1.8e-07 59.3 36 75.0
Gorai.005G167100 Gossypium raimondii HOM05D005988 ORTHO05D007392 1.8e-07 59.3 36 75.0
BcaB03g15204 Brassica carinata HOM05D005988 ORTHO05D007392 2.3e-07 58.9 36 72.2
BcaB05g24271 Brassica carinata HOM05D005988 ORTHO05D007392 2.3e-07 58.9 36 72.2
BcaB05g24277 Brassica carinata HOM05D005988 ORTHO05D007392 2.3e-07 58.9 36 72.2
BcaC03g14837 Brassica carinata HOM05D005988 ORTHO05D007392 2.3e-07 58.9 36 72.2
BcaC08g46168 Brassica carinata HOM05D005988 ORTHO05D007392 2.3e-07 58.9 36 72.2
A02p14180 Brassica napus HOM05D005988 ORTHO05D007392 2.3e-07 58.9 36 72.2
A07p33950 Brassica napus HOM05D005988 ORTHO05D007392 2.3e-07 58.9 36 72.2
C02p22980 Brassica napus HOM05D005988 ORTHO05D007392 2.3e-07 58.9 36 72.2
C06p42910 Brassica napus HOM05D005988 ORTHO05D007392 2.3e-07 58.9 36 72.2
BraA02t06481Z Brassica rapa HOM05D005988 ORTHO05D007392 2.3e-07 58.9 36 72.2
COL.COLO4_20400 Corchorus olitorius HOM05D005988 ORTHO05D007392 2.3e-07 58.9 36 75.0
Thhalv10019308m.g Eutrema salsugineum HOM05D005988 ORTHO05D007392 2.3e-07 58.9 36 72.2
Gohir.A03G126200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 2.3e-07 58.9 36 75.0
Sp5g22300 Schrenkiella parvula HOM05D005988 ORTHO05D007392 2.3e-07 58.9 36 72.2
TWI18G1296 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 2.3e-07 58.9 34 76.5
TWI75G1041 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 2.3e-07 58.9 34 79.4
Ca_18034_v3 Cicer arietinum L. HOM05D005988 ORTHO05D007392 3.0e-07 58.5 36 75.0
Hma1.2p1_0065F.1_g035500 Hydrangea macrophylla HOM05D005988 ORTHO05D007392 3.0e-07 58.5 36 75.0
AL2G25900 Arabidopsis lyrata HOM05D005988 ORTHO05D007392 3.9e-07 58.2 36 69.4
AT1G67350 Arabidopsis thaliana HOM05D005988 ORTHO05D007392 3.9e-07 58.2 36 69.4
CARHR059890 Cardamine hirsuta HOM05D005988 ORTHO05D007392 3.9e-07 58.2 36 69.4
Lalb_Chr07g0187141 Lupinus albus HOM05D005988 ORTHO05D007392 3.9e-07 58.2 36 72.2
Nitab4.5_0005361g0020 Nicotiana tabacum HOM05D005988 ORTHO05D007392 3.9e-07 58.2 36 77.8
Nitab4.5_0006506g0010 Nicotiana tabacum HOM05D005988 ORTHO05D007392 3.9e-07 58.2 36 77.8
Psat0s2314g0040 Pisum sativum HOM05D005988 ORTHO05D007392 3.9e-07 58.2 36 72.2
CSS0025775 Camellia sinensis var. sinensis HOM05D005988 ORTHO05D007392 5.1e-07 57.8 36 72.2
CAN.G875.9 Capsicum annuum HOM05D005988 ORTHO05D007392 5.1e-07 57.8 37 75.7
Manes.13G012300 Manihot esculenta HOM05D005988 ORTHO05D007392 5.1e-07 57.8 36 75.0
THA.LOC109117182 Tarenaya hassleriana HOM05D005988 ORTHO05D007392 5.1e-07 57.8 36 69.4
Thecc.02G210500 Theobroma cacao HOM05D005988 ORTHO05D007392 5.1e-07 57.8 36 72.2
CiPaw.05G109900 Carya illinoinensis HOM05D005988 ORTHO05D007392 6.7e-07 57.4 36 72.2
PGR102G1123 Punica granatum HOM05D005988 ORTHO05D007392 6.7e-07 57.4 36 72.2
RcHm_v2.0_Chr4g0430261 Rosa chinensis HOM05D005988 ORTHO05D007392 6.7e-07 57.4 36 72.2
TPR.G34164 Trifolium pratense HOM05D005988 ORTHO05D007392 6.7e-07 57.4 36 72.2
Glyma.05G147302 Glycine max HOM05D005988 ORTHO05D007392 8.8e-07 57.0 36 69.4
Glyma.08G104300 Glycine max HOM05D005988 ORTHO05D007392 8.8e-07 57.0 36 69.4
MBI01_g01248_MAGBIO Magnolia biondii HOM05D005988 ORTHO05D007392 8.8e-07 57.0 36 72.2
Phvul.L002046 Phaseolus vulgaris HOM05D005988 ORTHO05D007392 8.8e-07 57.0 36 69.4
Lj4g0004056 Lotus japonicus HOM05D005988 ORTHO05D007392 1.1e-06 56.6 36 72.2
CANSAT01G3258 Cannabis sativa HOM05D005988 ORTHO05D007392 1.5e-06 56.2 36 69.4
Carub.0002s1364 Capsella rubella HOM05D005988 ORTHO05D007392 1.5e-06 56.2 36 66.7
Cpa.g.sc43.58 Carica papaya HOM05D005988 ORTHO05D007392 1.5e-06 56.2 36 75.0
Cfa009369 Carpinus fangiana HOM05D005988 ORTHO05D007392 1.5e-06 56.2 36 69.4
Haze_12418 Corylus avellana HOM05D005988 ORTHO05D007392 1.5e-06 56.2 36 69.4
Eucgr.B03491 Eucalyptus grandis HOM05D005988 ORTHO05D007392 1.5e-06 56.2 36 75.0
PSO017G5437 Papaver somniferum HOM05D005988 ORTHO05D007392 1.5e-06 56.2 36 69.4
Peaxi162Scf00038g00014 Petunia axillaris HOM05D005988 ORTHO05D007392 1.5e-06 56.2 37 73.0
Rhsim04G0162300 Rhododendron simsii HOM05D005988 ORTHO05D007392 1.5e-06 56.2 36 69.4
vmacro01331 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 1.5e-06 56.2 36 69.4
vmacro05591 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 1.5e-06 56.2 36 69.4
vmacro23425 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 1.5e-06 56.2 36 69.4
Medtr8g080630 Medicago truncatula HOM05D005988 ORTHO05D007392 2.0e-06 55.8 36 69.4
PGSC0003DMG400017679 Solanum tuberosum HOM05D005988 ORTHO05D007392 2.0e-06 55.8 36 75.0
TPR.G17077 Trifolium pratense HOM05D005988 ORTHO05D007392 2.0e-06 55.8 36 69.4
ECA233G0411 Erigeron canadensis HOM05D005988 ORTHO05D007392 2.6e-06 55.5 36 72.2
FvH4_4g23770 Fragaria vesca HOM05D005988 ORTHO05D007392 2.6e-06 55.5 36 69.4
FAN07G1208 Fragaria x ananassa HOM05D005988 ORTHO05D007392 2.6e-06 55.5 36 69.4
FAN12G0190 Fragaria x ananassa HOM05D005988 ORTHO05D007392 2.6e-06 55.5 36 69.4
FAN17G2984 Fragaria x ananassa HOM05D005988 ORTHO05D007392 2.6e-06 55.5 36 69.4
Manes.12G011400 Manihot esculenta HOM05D005988 ORTHO05D007392 2.6e-06 55.5 36 72.2
Solyc04g045620.3 Solanum lycopersicum HOM05D005988 ORTHO05D007392 2.6e-06 55.5 36 72.2
Sopen04g017580 Solanum pennellii HOM05D005988 ORTHO05D007392 2.6e-06 55.5 36 72.2
QL03p052764 Quercus lobata HOM05D005988 ORTHO05D007392 3.3e-06 55.1 36 66.7
AUR62034347 Chenopodium quinoa HOM05D005988 ORTHO05D007392 4.4e-06 54.7 36 66.7
Potri.003G173000 Populus trichocarpa HOM05D005988 ORTHO05D007392 4.4e-06 54.7 36 72.2
Prupe.1G225900 Prunus persica HOM05D005988 ORTHO05D007392 4.4e-06 54.7 36 66.7
Hund13388 Selenicereus undatus HOM05D005988 ORTHO05D007392 4.4e-06 54.7 36 69.4
Potri.001G055400 Populus trichocarpa HOM05D005988 ORTHO05D007392 5.7e-06 54.3 36 69.4
Rhsim12G0099600 Rhododendron simsii HOM05D005988 ORTHO05D007392 5.7e-06 54.3 36 66.7
Sabra01G0040000 Salix brachista HOM05D005988 ORTHO05D007392 5.7e-06 54.3 36 69.4
Sabra03G0126500 Salix brachista HOM05D005988 ORTHO05D007392 5.7e-06 54.3 36 69.4
SalBow8G0976 Salvia bowleyana HOM05D005988 ORTHO05D007392 5.7e-06 54.3 36 66.7
Sc15g0005560 Simmondsia chinensis HOM05D005988 ORTHO05D007392 5.7e-06 54.3 36 66.7
Sc15g0005760 Simmondsia chinensis HOM05D005988 ORTHO05D007392 5.7e-06 54.3 36 66.7
Aqoxy3G00796 Aquilegia oxysepala HOM05D005988 ORTHO05D007392 7.4e-06 53.9 36 66.7
ClCG11G013680 Citrullus lanatus HOM05D005988 ORTHO05D007392 7.4e-06 53.9 36 66.7
Lalb_Chr13g0294321 Lupinus albus HOM05D005988 ORTHO05D007392 7.4e-06 53.9 36 66.7
unitig_62.g23652 Utricularia gibba HOM05D005988 ORTHO05D007392 7.4e-06 53.9 36 66.7
EL10Ac2g02768 Beta vulgaris HOM05D005988 ORTHO05D007392 9.7e-06 53.5 35 65.7


User provided reference genes

Program Settings