Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 1.0e-66 256.5 123 100.0
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 1.5e-65 252.7 123 97.6
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 1.6e-64 249.2 119 98.3
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 4.7e-64 247.7 119 97.5
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 1.9e-60 235.7 119 90.8
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 2.1e-51 205.7 119 80.7
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 3.5e-51 204.9 119 82.4
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 4.6e-51 204.5 119 81.5
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 4.6e-51 204.5 119 79.8
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 4.6e-51 204.5 119 81.5
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 4.6e-51 204.5 119 81.5
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 1.3e-50 203.0 121 80.2
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 1.3e-50 203.0 119 80.7
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 2.3e-50 202.2 121 80.2
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 2.3e-50 202.2 119 79.0
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 2.3e-50 202.2 121 79.3
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 3.0e-50 201.8 121 79.3
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 3.0e-50 201.8 122 78.7
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 3.0e-50 201.8 119 80.7
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 3.9e-50 201.4 119 81.5
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 5.1e-50 201.1 121 77.7
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 5.1e-50 201.1 121 79.3
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 5.1e-50 201.1 119 79.0
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 6.6e-50 200.7 119 80.7
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 6.6e-50 200.7 119 80.7
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 8.7e-50 200.3 119 79.0
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 1.1e-49 199.9 120 78.3
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 1.1e-49 199.9 119 78.2
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 1.1e-49 199.9 121 77.7
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 1.5e-49 199.5 119 79.0
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 1.9e-49 199.1 121 77.7
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 1.9e-49 199.1 121 76.9
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 2.5e-49 198.7 123 78.0
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 4.3e-49 198.0 119 78.2
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 7.3e-49 197.2 119 77.3
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 7.3e-49 197.2 119 78.2
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 9.6e-49 196.8 119 78.2
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 9.6e-49 196.8 119 77.3
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 9.6e-49 196.8 119 75.6
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 1.6e-48 196.1 119 75.6
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.6e-48 196.1 119 79.0
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 2.1e-48 195.7 119 74.8
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 2.1e-48 195.7 119 77.3
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 2.1e-48 195.7 119 77.3
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 2.8e-48 195.3 119 77.3
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 2.8e-48 195.3 119 77.3
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 2.8e-48 195.3 121 77.7
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 4.8e-48 194.5 119 74.8
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 8.1e-48 193.7 120 77.5
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 8.1e-48 193.7 119 73.9
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 1.4e-47 193.0 119 76.5
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 1.4e-47 193.0 119 76.5
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 1.4e-47 193.0 119 76.5
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 1.4e-47 193.0 119 75.6
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 1.4e-47 193.0 119 77.3
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 1.8e-47 192.6 119 76.5
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 3.1e-47 191.8 127 75.6
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 3.1e-47 191.8 119 76.5
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 3.1e-47 191.8 119 76.5
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 3.1e-47 191.8 119 74.8
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 5.3e-47 191.0 119 77.3
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 5.3e-47 191.0 119 74.8
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 6.9e-47 190.7 119 73.1
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 6.9e-47 190.7 120 73.3
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 6.9e-47 190.7 122 76.2
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 6.9e-47 190.7 119 73.9
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 9.0e-47 190.3 121 76.0
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 9.0e-47 190.3 121 75.2
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 1.2e-46 189.9 119 78.2
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 1.5e-46 189.5 119 75.6
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 1.5e-46 189.5 119 73.1
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 2.6e-46 188.7 119 73.9
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.6e-46 188.7 119 75.6
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.6e-46 188.7 119 75.6
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 2.6e-46 188.7 119 71.4
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 3.4e-46 188.3 119 75.6
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 3.4e-46 188.3 121 74.4
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 4.5e-46 188.0 120 75.0
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 5.8e-46 187.6 119 73.9
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 7.6e-46 187.2 120 72.5
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 7.6e-46 187.2 121 72.7
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 7.6e-46 187.2 119 72.3
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 9.9e-46 186.8 119 73.9
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 9.9e-46 186.8 119 75.6
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 1.7e-45 186.0 119 74.8
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 2.2e-45 185.7 119 71.4
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 2.2e-45 185.7 121 71.9
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 2.2e-45 185.7 119 71.4
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 2.9e-45 185.3 119 74.8
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 2.9e-45 185.3 119 72.3
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 3.8e-45 184.9 119 73.1
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 3.8e-45 184.9 119 73.1
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 4.9e-45 184.5 119 73.1
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 8.4e-45 183.7 120 73.3
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.1e-44 183.3 119 74.8
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 1.1e-44 183.3 120 70.8
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 1.4e-44 183.0 119 73.1
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 1.4e-44 183.0 119 73.1
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 1.4e-44 183.0 119 73.9
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 1.4e-44 183.0 119 70.6
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 1.9e-44 182.6 119 73.9
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 2.4e-44 182.2 119 73.9
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 4.2e-44 181.4 119 71.4
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.6e-43 179.5 119 73.1
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 1.6e-43 179.5 119 72.3
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 2.1e-43 179.1 119 73.9
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 2.7e-43 178.7 119 68.9
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 3.3e-41 171.8 100 77.0
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 5.8e-38 161.0 121 66.1
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 7.6e-38 160.6 119 64.7
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 2.7e-35 152.1 120 64.2
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 4.6e-35 151.4 119 66.4
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 4.6e-35 151.4 119 65.5
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 7.9e-35 150.6 121 59.5
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 1.1e-33 146.7 119 58.0
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 9.6e-33 143.7 119 54.6
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.0e-30 136.0 121 61.2
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 2.6e-30 135.6 119 60.5
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 4.5e-30 134.8 121 60.3
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 1.1e-28 130.2 106 56.6
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.9e-28 129.4 121 55.4
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.2e-27 126.7 121 54.5
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 1.5e-25 119.8 67 77.6
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 2.4e-23 112.5 90 64.4
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 1.2e-22 110.2 120 49.2
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 1.4e-20 103.2 69 72.5
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 3.4e-14 82.0 42 88.1
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 7.7e-14 80.9 121 38.0
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 5.0e-13 78.2 44 79.5


User provided reference genes

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