Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb052040 Zea mays HOM05D003412 ORTHO05D003962 1.4e-38 162.5 86 100.0
Zm00001eb075980 Zea mays HOM05D003412 ORTHO05D003962 3.7e-31 137.9 106 74.5
Zm00001eb080250 Zea mays HOM05D003412 ORTHO05D003962 1.7e-20 102.4 64 79.7
Zm00001eb417390 Zea mays HOM05D003412 ORTHO05D003962 6.1e-18 94.0 139 47.5
Zm00001eb354610 Zea mays HOM05D003412 ORTHO05D003962 1.8e-17 92.4 139 46.0
Os05g0135900 Oryza sativa ssp. japonica HOM05D003412 ORTHO05D003962 5.7e-16 87.4 137 44.5
Zm00001eb113430 Zea mays HOM05D003412 ORTHO05D003962 1.3e-15 86.3 68 66.2
Nitab4.5_0014791g0020 Nicotiana tabacum HOM05D003412 ORTHO05D003962 1.1e-11 73.2 137 38.7
Hma1.2p1_3304F.1_g335080 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 1.5e-11 72.8 137 38.7
Rhsim05G0121800 Rhododendron simsii HOM05D003412 ORTHO05D003962 1.9e-11 72.4 137 38.0
ECA236G3082 Erigeron canadensis HOM05D003412 ORTHO05D003962 2.5e-11 72.0 136 40.4
Peaxi162Scf00357g00017 Petunia axillaris HOM05D003412 ORTHO05D003962 3.3e-11 71.6 137 38.0
PGSC0003DMG400018247 Solanum tuberosum HOM05D003412 ORTHO05D003962 3.3e-11 71.6 135 38.5
GSVIVG01031318001 Vitis vinifera HOM05D003412 ORTHO05D003962 3.3e-11 71.6 137 38.7
Solyc01g101130.3 Solanum lycopersicum HOM05D003412 ORTHO05D003962 5.5e-11 70.9 135 38.5
Sopen01g044580 Solanum pennellii HOM05D003412 ORTHO05D003962 5.5e-11 70.9 135 38.5
CAN.G1248.24 Capsicum annuum HOM05D003412 ORTHO05D003962 7.2e-11 70.5 137 36.5
Nitab4.5_0001931g0010 Nicotiana tabacum HOM05D003412 ORTHO05D003962 7.2e-11 70.5 137 38.0
MSTRG.5167 Avicennia marina HOM05D003412 ORTHO05D003962 9.5e-11 70.1 136 38.2
Cc02_g35780 Coffea canephora HOM05D003412 ORTHO05D003962 9.5e-11 70.1 135 39.3
Lsat_1_v5_gn_9_77100 Lactuca sativa HOM05D003412 ORTHO05D003962 1.2e-10 69.7 137 36.5
Dinv24506 Davidia involucrata HOM05D003412 ORTHO05D003962 1.6e-10 69.3 133 39.1
Oeu000100.1 Olea europaea HOM05D003412 ORTHO05D003962 1.6e-10 69.3 137 38.0
Oeu036644.1 Olea europaea HOM05D003412 ORTHO05D003962 1.6e-10 69.3 135 37.8
Lj5A319T47 Lonicera japonica HOM05D003412 ORTHO05D003962 2.8e-10 68.6 136 38.2
Hma1.2p1_0052F.1_g030415 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 4.7e-10 67.8 137 36.5
TAR365G0905 Trochodendron aralioides HOM05D003412 ORTHO05D003962 4.7e-10 67.8 137 37.2
vmacro19768 Vaccinium macrocarpon HOM05D003412 ORTHO05D003962 6.1e-10 67.4 137 36.5
Cpa.g.sc48.220 Carica papaya HOM05D003412 ORTHO05D003962 1.0e-09 66.6 137 37.2
Nn4g25397 Nelumbo nucifera HOM05D003412 ORTHO05D003962 1.0e-09 66.6 137 39.4
CiPaw.08G150800 Carya illinoinensis HOM05D003412 ORTHO05D003962 1.4e-09 66.2 137 36.5
MSTRG.16423 Avicennia marina HOM05D003412 ORTHO05D003962 1.8e-09 65.9 136 36.0
MSTRG.27914 Avicennia marina HOM05D003412 ORTHO05D003962 1.8e-09 65.9 136 38.2
MBI19_g32732_MAGBIO Magnolia biondii HOM05D003412 ORTHO05D003962 3.0e-09 65.1 135 37.8
Duzib128G1566 Durio zibethinus HOM05D003412 ORTHO05D003962 4.0e-09 64.7 137 37.2
Duzib177G0752 Durio zibethinus HOM05D003412 ORTHO05D003962 4.0e-09 64.7 137 37.2
DCAR_025305 Daucus carota HOM05D003412 ORTHO05D003962 5.2e-09 64.3 137 36.5
Gohir.D13G116700 Gossypium hirsutum HOM05D003412 ORTHO05D003962 5.2e-09 64.3 137 37.2
Gorai.013G131200 Gossypium raimondii HOM05D003412 ORTHO05D003962 5.2e-09 64.3 137 37.2
Nn3g21904 Nelumbo nucifera HOM05D003412 ORTHO05D003962 5.2e-09 64.3 137 35.8
Rhsim11G0101900 Rhododendron simsii HOM05D003412 ORTHO05D003962 5.2e-09 64.3 135 36.3
CANSAT54G2189 Cannabis sativa HOM05D003412 ORTHO05D003962 6.8e-09 63.9 136 36.8
GSVIVG01028212001 Vitis vinifera HOM05D003412 ORTHO05D003962 8.9e-09 63.5 137 36.5
EL10Ac4g09549 Beta vulgaris HOM05D003412 ORTHO05D003962 1.2e-08 63.2 136 36.8
HanXRQChr03g0088701 Helianthus annuus HOM05D003412 ORTHO05D003962 1.2e-08 63.2 136 35.3
DCAR_029287 Daucus carota HOM05D003412 ORTHO05D003962 1.5e-08 62.8 136 35.3
Gohir.A13G113600 Gossypium hirsutum HOM05D003412 ORTHO05D003962 1.5e-08 62.8 137 36.5
Thecc.05G329000 Theobroma cacao HOM05D003412 ORTHO05D003962 1.5e-08 62.8 137 35.8
Sed0023403 Sechium edule HOM05D003412 ORTHO05D003962 2.0e-08 62.4 137 34.3
SGA_v2.0_scaffold117G32404 Striga asiatica HOM05D003412 ORTHO05D003962 2.0e-08 62.4 133 36.8
Ah.06g190650 Amaranthus hybridus HOM05D003412 ORTHO05D003962 4.4e-08 61.2 137 34.3
Migut.B00877 Erythranthe guttata HOM05D003412 ORTHO05D003962 4.4e-08 61.2 136 34.6
Oeu029183.1 Olea europaea HOM05D003412 ORTHO05D003962 4.4e-08 61.2 131 35.1
Sc16g0009380 Simmondsia chinensis HOM05D003412 ORTHO05D003962 4.4e-08 61.2 137 33.6
Glyma.10G144000 Glycine max HOM05D003412 ORTHO05D003962 5.7e-08 60.8 137 35.0
Eucgr.H01317 Eucalyptus grandis HOM05D003412 ORTHO05D003962 7.5e-08 60.5 137 34.3
Dinv30940 Davidia involucrata HOM05D003412 ORTHO05D003962 9.8e-08 60.1 42 71.4
Prupe.6G305600 Prunus persica HOM05D003412 ORTHO05D003962 9.8e-08 60.1 136 36.8
PGR083G2508 Punica granatum HOM05D003412 ORTHO05D003962 9.8e-08 60.1 47 61.7
Sabra13G0002900 Salix brachista HOM05D003412 ORTHO05D003962 9.8e-08 60.1 137 35.8
ClCG02G014670 Citrullus lanatus HOM05D003412 ORTHO05D003962 1.3e-07 59.7 137 32.8
Eucgr.B01817 Eucalyptus grandis HOM05D003412 ORTHO05D003962 1.7e-07 59.3 137 34.3
Potri.013G003400 Populus trichocarpa HOM05D003412 ORTHO05D003962 1.7e-07 59.3 47 63.8
Aqoxy2G02528 Aquilegia oxysepala HOM05D003412 ORTHO05D003962 2.2e-07 58.9 46 65.2
Lalb_Chr21g0310081 Lupinus albus HOM05D003412 ORTHO05D003962 2.8e-07 58.5 137 32.8
SGA_v2.0_scaffold279G46784 Striga asiatica HOM05D003412 ORTHO05D003962 2.8e-07 58.5 130 36.2
Actinidia16911 Actinidia chinensis HOM05D003412 ORTHO05D003962 3.7e-07 58.2 80 47.5
Haze_03996 Corylus avellana HOM05D003412 ORTHO05D003962 3.7e-07 58.2 80 46.2
QL03p010236 Quercus lobata HOM05D003412 ORTHO05D003962 3.7e-07 58.2 47 61.7
QL03p010471 Quercus lobata HOM05D003412 ORTHO05D003962 3.7e-07 58.2 47 61.7
SalBow1G0001 Salvia bowleyana HOM05D003412 ORTHO05D003962 3.7e-07 58.2 136 34.6
Hund21837 Selenicereus undatus HOM05D003412 ORTHO05D003962 3.7e-07 58.2 42 66.7
ATR0796G311 Amborella trichopoda HOM05D003412 ORTHO05D003962 4.9e-07 57.8 46 65.2
Ciclev10012076m.g Citrus clementina HOM05D003412 ORTHO05D003962 4.9e-07 57.8 137 34.3
CDE08G0751 Ceratophyllum demersum HOM05D003412 ORTHO05D003962 6.3e-07 57.4 67 49.3
FvH4_6g08410 Fragaria vesca HOM05D003412 ORTHO05D003962 6.3e-07 57.4 80 46.2
FAN05G5683 Fragaria x ananassa HOM05D003412 ORTHO05D003962 6.3e-07 57.4 80 45.0
FAN09G0161 Fragaria x ananassa HOM05D003412 ORTHO05D003962 6.3e-07 57.4 80 46.2
FAN14G3569 Fragaria x ananassa HOM05D003412 ORTHO05D003962 6.3e-07 57.4 80 46.2
Oeu061921.1 Olea europaea HOM05D003412 ORTHO05D003962 6.3e-07 57.4 107 39.3
RcHm_v2.0_Chr3g0458381 Rosa chinensis HOM05D003412 ORTHO05D003962 6.3e-07 57.4 80 46.2
TAR362G0077 Trochodendron aralioides HOM05D003412 ORTHO05D003962 6.3e-07 57.4 132 34.1
MELO3C004154.2 Cucumis melo HOM05D003412 ORTHO05D003962 8.3e-07 57.0 47 59.6
CsaV3_2G007300 Cucumis sativus L. HOM05D003412 ORTHO05D003962 8.3e-07 57.0 47 59.6
MD12G1200500 Malus domestica HOM05D003412 ORTHO05D003962 8.3e-07 57.0 137 33.6
TAR365G0256 Trochodendron aralioides HOM05D003412 ORTHO05D003962 8.3e-07 57.0 42 64.3
Actinidia01664 Actinidia chinensis HOM05D003412 ORTHO05D003962 1.1e-06 56.6 42 66.7
BcaNung03912 Brassica carinata HOM05D003412 ORTHO05D003962 1.1e-06 56.6 73 43.8
Manes.08G107900 Manihot esculenta HOM05D003412 ORTHO05D003962 1.1e-06 56.6 47 61.7
Sed0017632 Sechium edule HOM05D003412 ORTHO05D003962 1.1e-06 56.6 80 43.8
Atru.chr12.1551 Acer truncatum HOM05D003412 ORTHO05D003962 1.4e-06 56.2 47 61.7
arahy.Tifrunner.gnm1.ann1.36CNLM Arachis hypogaea HOM05D003412 ORTHO05D003962 1.4e-06 56.2 42 64.3
arahy.Tifrunner.gnm1.ann1.D23GS1 Arachis hypogaea HOM05D003412 ORTHO05D003962 1.4e-06 56.2 42 64.3
BcaNung03675 Brassica carinata HOM05D003412 ORTHO05D003962 1.4e-06 56.2 73 43.8
COL.COLO4_05512 Corchorus olitorius HOM05D003412 ORTHO05D003962 1.4e-06 56.2 47 61.7
CDE02G2375 Ceratophyllum demersum HOM05D000427 ORTHO05D000386 1.8e-06 55.8 42 66.7
Lj5g0005042 Lotus japonicus HOM05D003412 ORTHO05D003962 1.8e-06 55.8 137 32.1
Phvul.007G204500 Phaseolus vulgaris HOM05D003412 ORTHO05D003962 1.8e-06 55.8 112 36.6
Potri.005G003600 Populus trichocarpa HOM05D003412 ORTHO05D003962 1.8e-06 55.8 47 59.6
Sabra05G0000900 Salix brachista HOM05D003412 ORTHO05D003962 1.8e-06 55.8 47 59.6
Sabra05G0015000 Salix brachista HOM05D003412 ORTHO05D003962 1.8e-06 55.8 47 59.6
Hund07273 Selenicereus undatus HOM05D003412 ORTHO05D003962 1.8e-06 55.8 46 65.2
Hund07277 Selenicereus undatus HOM05D003412 ORTHO05D003962 1.8e-06 55.8 46 65.2
TPR.G2623 Trifolium pratense HOM05D003412 ORTHO05D003962 1.8e-06 55.8 137 32.1
vmacro01603 Vaccinium macrocarpon HOM05D003412 ORTHO05D003962 1.8e-06 55.8 80 43.8
VMungo0720G0630 Vigna mungo HOM05D003412 ORTHO05D003962 1.8e-06 55.8 47 59.6
arahy.Tifrunner.gnm1.ann1.LCTE14 Arachis hypogaea HOM05D003412 ORTHO05D003962 2.4e-06 55.5 47 59.6
CiPaw.07G035400 Carya illinoinensis HOM05D003412 ORTHO05D003962 2.4e-06 55.5 82 42.7
AUR62000468 Chenopodium quinoa HOM05D003412 ORTHO05D003962 2.4e-06 55.5 46 60.9
MD04G1187100 Malus domestica HOM05D003412 ORTHO05D003962 2.4e-06 55.5 47 59.6
Sp2g21210 Schrenkiella parvula HOM05D003412 ORTHO05D003962 2.4e-06 55.5 80 45.0
TWI56G0029 Tripterygium wilfordii HOM05D003412 ORTHO05D003962 2.4e-06 55.5 47 59.6
BcaB04g19713 Brassica carinata HOM05D003412 ORTHO05D003962 3.1e-06 55.1 80 45.0
Ca_10195_v3 Cicer arietinum L. HOM05D003412 ORTHO05D003962 3.1e-06 55.1 47 61.7
Thhalv10004552m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 3.1e-06 55.1 80 45.0
A06p37010 Brassica napus HOM05D003412 ORTHO05D003962 4.1e-06 54.7 45 60.0
C07p41480 Brassica napus HOM05D003412 ORTHO05D003962 4.1e-06 54.7 73 42.5
BolC7t44681H Brassica oleracea HOM05D003412 ORTHO05D003962 4.1e-06 54.7 73 42.5
C09p06270 Brassica napus HOM05D003412 ORTHO05D003962 5.4e-06 54.3 80 42.5
BolC9t53547H Brassica oleracea HOM05D003412 ORTHO05D003962 5.4e-06 54.3 80 42.5
BraA09t36208Z Brassica rapa HOM05D003412 ORTHO05D003962 5.4e-06 54.3 73 46.6
Thhalv10021934m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 5.4e-06 54.3 73 46.6
Lalb_Chr06g0167331 Lupinus albus HOM05D003412 ORTHO05D003962 5.4e-06 54.3 47 59.6
Sp3g04690 Schrenkiella parvula HOM05D003412 ORTHO05D003962 5.4e-06 54.3 42 59.5
AL3G16570 Arabidopsis lyrata HOM05D003412 ORTHO05D003962 7.0e-06 53.9 63 49.2
BcaC04g23636 Brassica carinata HOM05D003412 ORTHO05D003962 7.0e-06 53.9 85 37.6
Medtr1g484830 Medicago truncatula HOM05D003412 ORTHO05D003962 7.0e-06 53.9 47 57.4
arahy.Tifrunner.gnm1.ann1.WSUD3I Arachis hypogaea HOM05D003412 ORTHO05D003962 9.2e-06 53.5 81 42.0
Lju99C6G3 Lonicera japonica HOM05D003412 ORTHO05D003962 9.2e-06 53.5 135 31.9
Manes.09G180600 Manihot esculenta HOM05D003412 ORTHO05D003962 9.2e-06 53.5 80 43.8
Psat6g155400 Pisum sativum HOM05D003412 ORTHO05D003962 9.2e-06 53.5 47 55.3
HPP92_026058 Vanilla planifolia HOM05D003412 ORTHO05D003962 9.2e-06 53.5 47 53.2


User provided reference genes

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