Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb051370 Zea mays HOM05D015920 ORTHO05D019330 0.0e+00 1625.5 810 100.0
Zm00001eb051360 Zea mays HOM05D015920 ORTHO05D019330 6.9e-180 635.2 800 47.9
Zm00001eb219020 Zea mays HOM05D015920 ORTHO05D019330 1.9e-161 573.9 814 45.8
Os03g0619600 Oryza sativa ssp. japonica HOM05D015920 ORTHO05D019330 1.1e-89 335.5 425 48.5
Os03g0619800 Oryza sativa ssp. japonica HOM05D015920 ORTHO05D019330 5.5e-68 263.5 460 38.0
Os03g0620400 Oryza sativa ssp. japonica HOM05D015920 ORTHO05D019330 3.7e-32 144.4 286 32.9
Os12g0591300 Oryza sativa ssp. japonica HOM05D015920 ORTHO05D019330 1.3e-24 119.4 328 29.3
Zm00001eb051350 Zea mays HOM05D000823 ORTHO05D000088 6.2e-19 100.5 162 39.5
Zm00001eb051330 Zea mays HOM05D000395 ORTHO05D000088 4.9e-16 90.9 279 29.7
Zm00001eb051340 Zea mays HOM05D000823 ORTHO05D000088 4.9e-16 90.9 149 37.6
PSO541G3694 Papaver somniferum HOM05D000395 ORTHO05D000088 4.1e-15 87.8 316 27.5
Zm00001eb218990 Zea mays HOM05D000823 ORTHO05D000088 4.1e-15 87.8 160 34.4
Atru.chr13.593 Acer truncatum HOM05D000823 ORTHO05D000088 2.5e-12 78.6 352 26.7
Dinv39357 Davidia involucrata HOM05D000823 ORTHO05D000088 1.6e-11 75.9 399 25.3
Zm00001eb092100 Zea mays HOM05D001093 ORTHO05D000743 2.8e-11 75.1 56 55.4
MD00G1022000 Malus domestica HOM05D000395 ORTHO05D000088 3.6e-11 74.7 263 26.6
Os11g0160100 Oryza sativa ssp. japonica HOM05D001093 ORTHO05D000743 6.2e-11 73.9 202 27.7
Os12g0161900 Oryza sativa ssp. japonica HOM05D001093 ORTHO05D000743 1.4e-10 72.8 62 53.2
Ciclev10000881m.g Citrus clementina HOM05D000823 ORTHO05D000088 1.8e-10 72.4 336 25.9
CANSAT01G2152 Cannabis sativa HOM05D000395 ORTHO05D000088 3.1e-10 71.6 425 23.3
CAN.G322.81 Capsicum annuum HOM05D000395 ORTHO05D002065 5.2e-10 70.9 336 23.5
RcHm_v2.0_Chr6g0300031 Rosa chinensis HOM05D000823 ORTHO05D000088 5.2e-10 70.9 308 26.9
TPR.G15766 Trifolium pratense HOM05D000823 ORTHO05D000088 5.2e-10 70.9 368 25.0
FvH4_6g38700 Fragaria vesca HOM05D000395 ORTHO05D000088 8.9e-10 70.1 288 22.6
FAN14G4811 Fragaria x ananassa HOM05D000395 ORTHO05D000088 8.9e-10 70.1 288 22.6
CANSAT01G1431 Cannabis sativa HOM05D000395 ORTHO05D000088 2.0e-09 68.9 280 23.9
CANSAT78G1395 Cannabis sativa HOM05D000395 ORTHO05D000088 2.0e-09 68.9 391 23.3
FvH4_2g40640 Fragaria vesca HOM05D000823 ORTHO05D000088 2.0e-09 68.9 348 26.1
TWI12G0966 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 5.8e-09 67.4 354 25.1
MSTRG.1316 Avicennia marina HOM05D000823 ORTHO05D000088 7.5e-09 67.0 325 25.5
Migut.C00649 Erythranthe guttata HOM05D000823 ORTHO05D000088 9.9e-09 66.6 325 25.2
MBI16_g19885_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 9.9e-09 66.6 110 33.6
Potri.014G036800 Populus trichocarpa HOM05D000823 ORTHO05D000088 1.3e-08 66.2 322 24.5
FvH4_7g02010 Fragaria vesca HOM05D000395 ORTHO05D000088 1.7e-08 65.9 273 27.8
Gorai.008G071600 Gossypium raimondii HOM05D000395 ORTHO05D000088 1.7e-08 65.9 359 22.8
PGR031G0338 Punica granatum HOM05D000823 ORTHO05D000088 1.7e-08 65.9 344 24.1
QL02p006444 Quercus lobata HOM05D000823 ORTHO05D000088 1.7e-08 65.9 339 24.2
Cc10_g03680 Coffea canephora HOM05D000823 ORTHO05D000088 2.2e-08 65.5 423 23.9
FAN06G4020 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.2e-08 65.5 274 28.1
Os03g0621600 Oryza sativa ssp. japonica HOM05D000823 ORTHO05D000088 2.9e-08 65.1 222 25.7
SalBow7G0768 Salvia bowleyana HOM05D000823 ORTHO05D000088 2.9e-08 65.1 323 26.3
CANSAT78G0477 Cannabis sativa HOM05D000395 ORTHO05D000088 3.7e-08 64.7 244 24.2
TPR.G14798 Trifolium pratense HOM05D000395 ORTHO05D000088 3.7e-08 64.7 109 37.6
CANSAT01G0582 Cannabis sativa HOM05D000395 ORTHO05D000088 4.9e-08 64.3 263 24.7
Duzib147G0434 Durio zibethinus HOM05D000395 ORTHO05D000088 4.9e-08 64.3 297 23.6
Nitab4.5_0000806g0010 Nicotiana tabacum HOM05D000395 ORTHO05D000088 4.9e-08 64.3 369 22.8
TWI09G1538 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 4.9e-08 64.3 303 22.4
Actinidia38035 Actinidia chinensis HOM05D000823 ORTHO05D000088 6.4e-08 63.9 342 26.0
ATR0665G295 Amborella trichopoda HOM05D000823 ORTHO05D000088 6.4e-08 63.9 123 32.5
Eucgr.F02399 Eucalyptus grandis HOM05D000823 ORTHO05D000088 6.4e-08 63.9 352 23.6
MD15G1034200 Malus domestica HOM05D000823 ORTHO05D000088 6.4e-08 63.9 335 24.5
Os12g0591500 Oryza sativa ssp. japonica HOM05D000395 ORTHO05D000088 6.4e-08 63.9 177 26.0
FvH4_1g14680 Fragaria vesca HOM05D000395 ORTHO05D000088 8.3e-08 63.5 448 23.4
Gohir.A12G067300 Gossypium hirsutum HOM05D000395 ORTHO05D000088 8.3e-08 63.5 294 23.8
FvH4_1g29250 Fragaria vesca HOM05D000395 ORTHO05D000088 1.1e-07 63.2 265 27.5
MD08G1039600 Malus domestica HOM05D000823 ORTHO05D000088 1.1e-07 63.2 332 25.9
Thecc.01G047000 Theobroma cacao HOM05D000395 ORTHO05D000088 1.1e-07 63.2 109 33.0
HPP92_015720 Vanilla planifolia HOM05D000395 ORTHO05D000088 1.1e-07 63.2 134 28.4
HPP92_026640 Vanilla planifolia HOM05D000395 ORTHO05D000088 1.1e-07 63.2 134 28.4
Zm00001eb030510 Zea mays HOM05D000823 ORTHO05D000088 1.1e-07 63.2 232 26.3
EL10Ac1g01749 Beta vulgaris HOM05D000823 ORTHO05D000088 1.4e-07 62.8 352 23.9
Nitab4.5_0002280g0040 Nicotiana tabacum HOM05D000823 ORTHO05D000088 1.4e-07 62.8 317 24.3
PSO541G5266 Papaver somniferum HOM05D000395 ORTHO05D000088 1.4e-07 62.8 336 22.9
Solyc04g079590.3 Solanum lycopersicum HOM05D000823 ORTHO05D000088 1.4e-07 62.8 345 23.8
Sopen04g033170 Solanum pennellii HOM05D000823 ORTHO05D000088 2.4e-07 62.0 342 24.9
vmacro04480 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 2.4e-07 62.0 356 26.4
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 3.2e-07 61.6 112 34.8
TWI73G1024 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 3.2e-07 61.6 301 24.3
CANSAT01G0597 Cannabis sativa HOM05D000395 ORTHO05D000088 4.1e-07 61.2 378 23.3
Eucgr.I01211 Eucalyptus grandis HOM05D000395 ORTHO05D000088 4.1e-07 61.2 140 30.0
MBI19_g05297_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D000743 4.1e-07 61.2 132 35.6
SEGI_06639 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 4.1e-07 61.2 170 27.6
SEGI_17863 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 4.1e-07 61.2 140 25.7
Peaxi162Scf01514g00024 Petunia axillaris HOM05D000823 ORTHO05D000088 5.4e-07 60.8 339 22.4
SEGI_28063 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 5.4e-07 60.8 278 23.0
ATR1120G190 Amborella trichopoda HOM05D000823 ORTHO05D000088 7.1e-07 60.5 128 30.5
AUR62033880 Chenopodium quinoa HOM05D000823 ORTHO05D000088 7.1e-07 60.5 88 38.6
MD00G1020600 Malus domestica HOM05D000395 ORTHO05D000088 7.1e-07 60.5 425 21.4
Oeu006163.1 Olea europaea HOM05D000823 ORTHO05D000088 7.1e-07 60.5 245 26.5
Os11g0197600 Oryza sativa ssp. japonica HOM05D000823 ORTHO05D000088 7.1e-07 60.5 124 30.6
PSO675G3266 Papaver somniferum HOM05D000395 ORTHO05D000088 7.1e-07 60.5 327 22.9
CiPaw.02G012600 Carya illinoinensis HOM05D000395 ORTHO05D000088 9.2e-07 60.1 320 22.5
FAN19G3192 Fragaria x ananassa HOM05D000395 ORTHO05D000088 9.2e-07 60.1 277 26.7
Nitab4.5_0000090g0070 Nicotiana tabacum HOM05D000395 ORTHO05D000088 9.2e-07 60.1 286 24.5
Nitab4.5_0001401g0160 Nicotiana tabacum HOM05D000395 ORTHO05D000088 9.2e-07 60.1 313 23.6
SGA_v2.0_scaffold204G41627 Striga asiatica HOM05D000395 ORTHO05D000088 9.2e-07 60.1 89 36.0
FAN19G3035 Fragaria x ananassa HOM05D000395 ORTHO05D000088 1.2e-06 59.7 436 22.9
Cpa.g.sc49.44 Carica papaya HOM05D001093 ORTHO05D000743 1.6e-06 59.3 78 39.7
Gohir.A08G223600 Gossypium hirsutum HOM05D000395 ORTHO05D000088 1.6e-06 59.3 426 23.0
Hma1.2p1_0260F.1_g104520 Hydrangea macrophylla HOM05D000823 ORTHO05D000088 1.6e-06 59.3 382 23.6
Medtr6g044600 Medicago truncatula HOM05D001093 ORTHO05D000743 1.6e-06 59.3 47 46.8
Nitab4.5_0000068g0140 Nicotiana tabacum HOM05D000823 ORTHO05D000088 1.6e-06 59.3 350 24.9
Nitab4.5_0002615g0010 Nicotiana tabacum HOM05D000395 ORTHO05D000088 1.6e-06 59.3 352 22.4
TWI09G0938 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 1.6e-06 59.3 113 31.9
Duzib264G0510 Durio zibethinus HOM05D000395 ORTHO05D000088 2.1e-06 58.9 128 29.7
FvH4_6g38690 Fragaria vesca HOM05D000395 ORTHO05D000088 2.1e-06 58.9 253 22.1
Manes.10G031300 Manihot esculenta HOM05D000395 ORTHO05D000088 2.1e-06 58.9 347 22.2
Rhsim07G0234100 Rhododendron simsii HOM05D000823 ORTHO05D000088 2.1e-06 58.9 359 25.1
SGA_v2.0_scaffold82G26218 Striga asiatica HOM05D000823 ORTHO05D000088 2.1e-06 58.9 323 24.1
arahy.Tifrunner.gnm1.ann1.KVXN1E Arachis hypogaea HOM05D000212 ORTHO05D005509 2.7e-06 58.5 276 20.7
arahy.Tifrunner.gnm1.ann1.R8IKXM Arachis hypogaea HOM05D000395 ORTHO05D000088 2.7e-06 58.5 125 29.6
Medtr1g021295 Medicago truncatula HOM05D000823 ORTHO05D000088 3.5e-06 58.2 140 30.7
RcHm_v2.0_Chr2g0103541 Rosa chinensis HOM05D000395 ORTHO05D000088 3.5e-06 58.2 263 24.3
Carub.0007s2351 Capsella rubella HOM05D001093 ORTHO05D011195 4.6e-06 57.8 68 35.3
CAN.G371.85 Capsicum annuum HOM05D000823 ORTHO05D000088 4.6e-06 57.8 355 23.1
CsaV3_3G044580 Cucumis sativus L. HOM05D000823 ORTHO05D000088 4.6e-06 57.8 424 22.4
Gorai.008G071500 Gossypium raimondii HOM05D000395 ORTHO05D000088 6.0e-06 57.4 272 24.6
Medtr1g035460 Medicago truncatula HOM05D000395 ORTHO05D000088 6.0e-06 57.4 176 29.5
Prupe.7G044500 Prunus persica HOM05D000395 ORTHO05D000088 6.0e-06 57.4 107 35.5
Prupe.7G044800 Prunus persica HOM05D000395 ORTHO05D000088 6.0e-06 57.4 107 35.5
Prupe.7G143600 Prunus persica HOM05D000395 ORTHO05D000088 6.0e-06 57.4 111 34.2
QL02p075828 Quercus lobata HOM05D000395 ORTHO05D000088 6.0e-06 57.4 446 21.3
Rhsim05G0079100 Rhododendron simsii HOM05D000395 ORTHO05D000088 6.0e-06 57.4 122 32.8
TAR376G0237 Trochodendron aralioides HOM05D000823 ORTHO05D000088 6.0e-06 57.4 292 26.7
arahy.Tifrunner.gnm1.ann1.Y4D700 Arachis hypogaea HOM05D000395 ORTHO05D000088 7.8e-06 57.0 124 27.4
DCAR_012760 Daucus carota HOM05D000823 ORTHO05D000088 7.8e-06 57.0 377 22.0
Lj2g0003753 Lotus japonicus HOM05D000395 ORTHO05D000088 7.8e-06 57.0 95 36.8
Medtr1g099270 Medicago truncatula HOM05D001093 ORTHO05D000743 7.8e-06 57.0 47 42.6
Medtr5g098320 Medicago truncatula HOM05D001093 ORTHO05D000743 7.8e-06 57.0 52 42.3


User provided reference genes

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