Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb051360 Zea mays HOM05D015920 ORTHO05D019330 1.1e-303 1045.8 505 100.0
Zm00001eb219020 Zea mays HOM05D015920 ORTHO05D019330 1.7e-205 719.5 532 72.4
Zm00001eb051370 Zea mays HOM05D015920 ORTHO05D019330 5.5e-183 644.8 800 47.9
Os03g0619600 Oryza sativa ssp. japonica HOM05D015920 ORTHO05D019330 1.6e-81 307.8 428 45.6
Os03g0619800 Oryza sativa ssp. japonica HOM05D015920 ORTHO05D019330 1.0e-67 261.9 436 39.0
Os03g0620400 Oryza sativa ssp. japonica HOM05D015920 ORTHO05D019330 1.2e-36 158.7 276 36.6
Os12g0591300 Oryza sativa ssp. japonica HOM05D015920 ORTHO05D019330 1.1e-26 125.6 320 29.7
Zm00001eb051350 Zea mays HOM05D000823 ORTHO05D000088 1.3e-19 102.1 143 42.0
Zm00001eb051340 Zea mays HOM05D000823 ORTHO05D000088 3.6e-17 94.0 143 42.0
Zm00001eb051330 Zea mays HOM05D000395 ORTHO05D000088 8.0e-17 92.8 144 37.5
Zm00001eb218990 Zea mays HOM05D000823 ORTHO05D000088 1.8e-16 91.7 146 39.7
CiPaw.02G012600 Carya illinoinensis HOM05D000395 ORTHO05D000088 1.4e-13 82.0 314 24.5
Os11g0160100 Oryza sativa ssp. japonica HOM05D001093 ORTHO05D000743 1.8e-13 81.6 98 36.7
MD00G1022000 Malus domestica HOM05D000395 ORTHO05D000088 3.1e-13 80.9 305 25.2
CANSAT01G0803 Cannabis sativa HOM05D000395 ORTHO05D000088 9.2e-13 79.3 386 24.6
CANSAT78G1395 Cannabis sativa HOM05D000395 ORTHO05D000088 1.2e-12 79.0 377 23.9
Zm00001eb092100 Zea mays HOM05D001093 ORTHO05D000743 1.6e-12 78.6 58 55.2
RcHm_v2.0_Chr6g0300031 Rosa chinensis HOM05D000823 ORTHO05D000088 1.0e-11 75.9 320 25.3
CANSAT01G1395 Cannabis sativa HOM05D000395 ORTHO05D000088 1.7e-11 75.1 370 23.5
CANSAT01G1431 Cannabis sativa HOM05D000395 ORTHO05D000088 1.7e-11 75.1 273 25.3
Atru.chr13.593 Acer truncatum HOM05D000823 ORTHO05D000088 2.3e-11 74.7 346 24.6
FvH4_2g40640 Fragaria vesca HOM05D000823 ORTHO05D000088 2.9e-11 74.3 359 24.8
Os12g0161900 Oryza sativa ssp. japonica HOM05D001093 ORTHO05D000743 6.6e-11 73.2 64 56.2
DCAR_012760 Daucus carota HOM05D000823 ORTHO05D000088 1.1e-10 72.4 326 25.5
SalBow7G0768 Salvia bowleyana HOM05D000823 ORTHO05D000088 1.1e-10 72.4 320 26.2
CANSAT01G0582 Cannabis sativa HOM05D000395 ORTHO05D000088 2.5e-10 71.2 364 22.8
Migut.C00649 Erythranthe guttata HOM05D000823 ORTHO05D000088 2.5e-10 71.2 373 24.4
MSTRG.1316 Avicennia marina HOM05D000823 ORTHO05D000088 3.3e-10 70.9 313 26.2
TWI73G1024 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 3.3e-10 70.9 301 26.6
CANSAT01G2152 Cannabis sativa HOM05D000395 ORTHO05D000088 4.3e-10 70.5 341 23.2
QL02p006444 Quercus lobata HOM05D000823 ORTHO05D000088 4.3e-10 70.5 344 22.7
CAN.G322.81 Capsicum annuum HOM05D000395 ORTHO05D002065 5.6e-10 70.1 330 24.5
Gorai.008G071600 Gossypium raimondii HOM05D000395 ORTHO05D000088 1.2e-09 68.9 322 24.8
PSO675G3266 Papaver somniferum HOM05D000395 ORTHO05D000088 2.1e-09 68.2 323 22.3
Eucgr.F02399 Eucalyptus grandis HOM05D000823 ORTHO05D000088 2.8e-09 67.8 355 22.5
SEGI_28063 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 3.6e-09 67.4 133 30.1
SGA_v2.0_scaffold82G26218 Striga asiatica HOM05D000823 ORTHO05D000088 3.6e-09 67.4 364 23.4
TWI09G1538 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 3.6e-09 67.4 296 23.3
Atru.chr5.2853 Acer truncatum HOM05D000395 ORTHO05D000088 4.7e-09 67.0 427 19.7
Dinv39357 Davidia involucrata HOM05D000823 ORTHO05D000088 4.7e-09 67.0 409 23.2
Nitab4.5_0000806g0010 Nicotiana tabacum HOM05D000395 ORTHO05D000088 4.7e-09 67.0 402 23.6
Zm00001eb030510 Zea mays HOM05D000823 ORTHO05D000088 4.7e-09 67.0 230 24.3
CANSAT78G1549 Cannabis sativa HOM05D000395 ORTHO05D000088 6.1e-09 66.6 285 23.2
FvH4_6g38700 Fragaria vesca HOM05D000395 ORTHO05D000088 6.1e-09 66.6 264 25.8
MD08G1039600 Malus domestica HOM05D000823 ORTHO05D000088 6.1e-09 66.6 340 25.3
MD15G1034200 Malus domestica HOM05D000823 ORTHO05D000088 6.1e-09 66.6 350 23.4
vmacro04480 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 6.1e-09 66.6 353 25.8
CsaV3_3G044580 Cucumis sativus L. HOM05D000823 ORTHO05D000088 8.0e-09 66.2 356 23.9
CANSAT01G0597 Cannabis sativa HOM05D000395 ORTHO05D000088 1.4e-08 65.5 256 25.0
MBI16_g19885_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 1.4e-08 65.5 123 31.7
QL02p075828 Quercus lobata HOM05D000395 ORTHO05D000088 1.4e-08 65.5 347 21.0
Actinidia38035 Actinidia chinensis HOM05D000823 ORTHO05D000088 1.8e-08 65.1 339 24.2
TAR376G0237 Trochodendron aralioides HOM05D000823 ORTHO05D000088 1.8e-08 65.1 126 33.3
CANSAT01G2675 Cannabis sativa HOM05D000395 ORTHO05D000088 2.3e-08 64.7 349 25.2
FvH4_6g38690 Fragaria vesca HOM05D000395 ORTHO05D000088 2.3e-08 64.7 254 23.2
Nitab4.5_0002280g0040 Nicotiana tabacum HOM05D000823 ORTHO05D000088 2.3e-08 64.7 306 25.5
Rhsim06G0040900 Rhododendron simsii HOM05D000823 ORTHO05D000088 2.3e-08 64.7 103 32.0
ECA247G3085 Erigeron canadensis HOM05D000823 ORTHO05D000088 3.0e-08 64.3 352 24.4
FAN14G4811 Fragaria x ananassa HOM05D000395 ORTHO05D000088 3.0e-08 64.3 258 22.9
SEGI_17863 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 3.0e-08 64.3 138 27.5
Cc10_g03680 Coffea canephora HOM05D000823 ORTHO05D000088 4.0e-08 63.9 424 24.1
FvH4_1g29250 Fragaria vesca HOM05D000395 ORTHO05D000088 4.0e-08 63.9 280 26.4
arahy.Tifrunner.gnm1.ann1.KVXN1E Arachis hypogaea HOM05D000212 ORTHO05D005509 5.2e-08 63.5 260 21.2
Ciclev10000881m.g Citrus clementina HOM05D000823 ORTHO05D000088 5.2e-08 63.5 446 22.2
Os03g0619850 Oryza sativa ssp. japonica HOM05D015920 ORTHO05D010215 5.2e-08 63.5 104 37.5
FAN19G3192 Fragaria x ananassa HOM05D000395 ORTHO05D000088 6.8e-08 63.2 296 25.0
FAN06G4020 Fragaria x ananassa HOM05D000395 ORTHO05D000088 8.9e-08 62.8 281 25.6
Nitab4.5_0001401g0160 Nicotiana tabacum HOM05D000395 ORTHO05D000088 8.9e-08 62.8 321 24.6
Os03g0621600 Oryza sativa ssp. japonica HOM05D000823 ORTHO05D000088 8.9e-08 62.8 222 25.2
FvH4_7g02010 Fragaria vesca HOM05D000395 ORTHO05D000088 1.2e-07 62.4 292 24.7
Nitab4.5_0000068g0140 Nicotiana tabacum HOM05D000823 ORTHO05D000088 1.2e-07 62.4 344 24.4
Nitab4.5_0013178g0010 Nicotiana tabacum HOM05D000395 ORTHO05D000088 1.2e-07 62.4 424 23.8
CANSAT25G0071 Cannabis sativa HOM05D000823 ORTHO05D000088 1.5e-07 62.0 357 21.8
Thecc.01G047000 Theobroma cacao HOM05D000395 ORTHO05D000088 1.5e-07 62.0 109 32.1
PGR031G1638 Punica granatum HOM05D000395 ORTHO05D000088 2.0e-07 61.6 104 34.6
MD00G1020600 Malus domestica HOM05D000395 ORTHO05D000088 3.4e-07 60.8 380 21.1
PSO541G5266 Papaver somniferum HOM05D000395 ORTHO05D000088 3.4e-07 60.8 277 24.2
Medtr1g021410 Medicago truncatula HOM05D000823 ORTHO05D000088 4.4e-07 60.5 156 32.7
Oeu006163.1 Olea europaea HOM05D000823 ORTHO05D000088 4.4e-07 60.5 238 28.6
SEGI_04156 Sequoiadendron giganteum HOM05D001093 ORTHO05D000743 4.4e-07 60.5 100 30.0
TPR.G11162 Trifolium pratense HOM05D000395 ORTHO05D000088 4.4e-07 60.5 280 22.9
TWI09G0938 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 4.4e-07 60.5 113 33.6
ATR0665G295 Amborella trichopoda HOM05D000823 ORTHO05D000088 5.7e-07 60.1 116 31.9
ATR1120G190 Amborella trichopoda HOM05D000823 ORTHO05D000088 5.7e-07 60.1 125 34.4
COL.COLO4_28383 Corchorus olitorius HOM05D012915 ORTHO05D012666 5.7e-07 60.1 253 25.7
TWI73G0729 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 5.7e-07 60.1 160 32.5
BcaNung00050 Brassica carinata HOM05D020533 ORTHO05D011195 7.5e-07 59.7 74 41.9
CANSAT01G1891 Cannabis sativa HOM05D000395 ORTHO05D000088 7.5e-07 59.7 265 23.8
Cc10_g03670 Coffea canephora HOM05D000823 ORTHO05D000088 7.5e-07 59.7 81 40.7
Os12g0591500 Oryza sativa ssp. japonica HOM05D000395 ORTHO05D000088 7.5e-07 59.7 175 26.9
HPP92_015720 Vanilla planifolia HOM05D000395 ORTHO05D000088 7.5e-07 59.7 134 28.4
HPP92_026640 Vanilla planifolia HOM05D000395 ORTHO05D000088 7.5e-07 59.7 134 28.4
AUR62033880 Chenopodium quinoa HOM05D000823 ORTHO05D000088 9.8e-07 59.3 88 37.5
Ca_10694_v3 Cicer arietinum L. HOM05D001093 ORTHO05D000743 9.8e-07 59.3 50 44.0
Hma1.2p1_0023F.1_g015270 Hydrangea macrophylla HOM05D000823 ORTHO05D000088 9.8e-07 59.3 354 23.7
Hma1.2p1_0260F.1_g104520 Hydrangea macrophylla HOM05D000823 ORTHO05D000088 9.8e-07 59.3 415 23.6
Sopen11g001700 Solanum pennellii HOM05D001093 ORTHO05D000743 9.8e-07 59.3 73 38.4
FAN28G0564 Fragaria x ananassa HOM05D000395 ORTHO05D000088 1.7e-06 58.5 267 22.5
Lj4A48T71 Lonicera japonica HOM05D000823 ORTHO05D000088 1.7e-06 58.5 109 34.9
MBI19_g05297_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D000743 1.7e-06 58.5 64 40.6
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 1.7e-06 58.5 112 33.9
PGSC0003DMG400020472 Solanum tuberosum HOM05D008195 ORTHO05D000743 1.7e-06 58.5 72 38.9
BcaC09g51595 Brassica carinata HOM05D001093 ORTHO05D011195 2.2e-06 58.2 55 47.3
BolC1t01130H Brassica oleracea HOM05D020533 ORTHO05D011195 2.2e-06 58.2 55 47.3
BraA01t00935Z Brassica rapa HOM05D001093 ORTHO05D011195 2.2e-06 58.2 55 47.3
CANSAT01G0224 Cannabis sativa HOM05D000395 ORTHO05D000088 2.2e-06 58.2 317 19.9
CiPaw.05G213100 Carya illinoinensis HOM05D001093 ORTHO05D000743 2.2e-06 58.2 103 33.0
Medtr1g035460 Medicago truncatula HOM05D000395 ORTHO05D000088 2.2e-06 58.2 158 30.4
Nn5g28671 Nelumbo nucifera HOM05D001093 ORTHO05D000743 2.2e-06 58.2 114 28.9
Os11g0197600 Oryza sativa ssp. japonica HOM05D000823 ORTHO05D000088 2.2e-06 58.2 124 29.8
CANSAT01G1099 Cannabis sativa HOM05D000395 ORTHO05D000088 2.9e-06 57.8 266 21.4
Cpa.g.sc49.46 Carica papaya HOM05D001093 ORTHO05D000743 2.9e-06 57.8 108 35.2
Eucgr.G00890 Eucalyptus grandis HOM05D000395 ORTHO05D000088 2.9e-06 57.8 99 33.3
Glyma.10G227100 Glycine max HOM05D001093 ORTHO05D000743 2.9e-06 57.8 70 37.1
Lj2C600G8 Lonicera japonica HOM05D000395 ORTHO05D000088 2.9e-06 57.8 116 29.3
Lj2g0003753 Lotus japonicus HOM05D000395 ORTHO05D000088 2.9e-06 57.8 95 36.8
CARHR224570 Cardamine hirsuta HOM05D001093 ORTHO05D011195 3.7e-06 57.4 64 39.1
Gohir.A10G093700 Gossypium hirsutum HOM05D000395 ORTHO05D000088 3.7e-06 57.4 293 21.5
Lj2A601G13 Lonicera japonica HOM05D000395 ORTHO05D000088 3.7e-06 57.4 101 32.7
Medtr7g050710 Medicago truncatula HOM05D000395 ORTHO05D000088 3.7e-06 57.4 130 32.3
Medtr7g050720 Medicago truncatula HOM05D000395 ORTHO05D000088 3.7e-06 57.4 128 30.5
Peaxi162Scf00463g00134 Petunia axillaris HOM05D000395 ORTHO05D000088 3.7e-06 57.4 302 22.2
TPR.G14798 Trifolium pratense HOM05D000395 ORTHO05D000088 3.7e-06 57.4 275 23.3
Medtr3g098790 Medicago truncatula HOM05D000395 ORTHO05D000088 4.9e-06 57.0 128 31.2
Nitab4.5_0000090g0060 Nicotiana tabacum HOM05D000395 ORTHO05D000088 4.9e-06 57.0 272 26.1
Nitab4.5_0008194g0040 Nicotiana tabacum HOM05D000395 ORTHO05D000088 4.9e-06 57.0 109 33.9
Solyc11g005740.2 Solanum lycopersicum HOM05D001093 ORTHO05D000743 4.9e-06 57.0 65 36.9
Thecc.08G147000 Theobroma cacao HOM05D001093 ORTHO05D000743 4.9e-06 57.0 61 44.3
EL10Ac1g01749 Beta vulgaris HOM05D000823 ORTHO05D000088 6.4e-06 56.6 196 29.6
A01p09910 Brassica napus HOM05D001093 ORTHO05D011195 6.4e-06 56.6 55 45.5
Carub.0007s2351 Capsella rubella HOM05D001093 ORTHO05D011195 6.4e-06 56.6 66 36.4
DCAR_003837 Daucus carota HOM05D000395 ORTHO05D000088 6.4e-06 56.6 335 23.0
Nitab4.5_0002126g0050 Nicotiana tabacum HOM05D000395 ORTHO05D000088 6.4e-06 56.6 286 24.8
Peaxi162Scf01514g00024 Petunia axillaris HOM05D000823 ORTHO05D000088 6.4e-06 56.6 448 22.1
Phvul.007G078100 Phaseolus vulgaris HOM05D001093 ORTHO05D000743 6.4e-06 56.6 53 43.4
Manes.10G033150 Manihot esculenta HOM05D000395 ORTHO05D000088 8.3e-06 56.2 74 37.8
Rhsim05G0079100 Rhododendron simsii HOM05D000395 ORTHO05D000088 8.3e-06 56.2 122 31.1
Sabra14G0026500 Salix brachista HOM05D000823 ORTHO05D000088 8.3e-06 56.2 336 24.7
PGSC0003DMG400026134 Solanum tuberosum HOM05D008195 ORTHO05D000743 8.3e-06 56.2 75 37.3
TWI09G0687 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 8.3e-06 56.2 163 29.4
TWI12G0966 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 8.3e-06 56.2 126 30.2


User provided reference genes

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