Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb051260 Zea mays HOM05D028645 ORTHO05D030730 1.1e-53 213.0 101 100.0
Zm00001eb313830 Zea mays HOM05D028645 ORTHO05D030730 1.1e-53 213.0 101 100.0
Zm00001eb197560 Zea mays HOM05D028645 ORTHO05D030730 1.4e-53 212.6 101 99.0
Zm00001eb293930 Zea mays HOM05D028645 ORTHO05D030730 3.1e-53 211.5 101 99.0
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 4.5e-20 101.3 55 87.3
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 1.7e-11 72.8 42 71.4
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 1.8e-08 62.8 54 48.1
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 3.0e-08 62.0 45 55.6
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 4.0e-08 61.6 45 55.6
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 8.8e-08 60.5 42 59.5
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 3.3e-07 58.5 67 41.8
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 3.3e-07 58.5 56 46.4
CBR_g19394 Chara braunii HOM05D003497 ORTHO05D003964 4.4e-07 58.2 56 50.0
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 4.4e-07 58.2 55 49.1
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 4.4e-07 58.2 42 59.5
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 4.4e-07 58.2 40 60.0
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 4.4e-07 58.2 41 56.1
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 5.7e-07 57.8 77 39.0
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 5.7e-07 57.8 56 48.2
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 5.7e-07 57.8 56 48.2
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 5.7e-07 57.8 57 54.4
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 5.7e-07 57.8 54 53.7
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 7.5e-07 57.4 56 46.4
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 9.7e-07 57.0 53 54.7
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 9.7e-07 57.0 54 51.9
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 9.7e-07 57.0 42 57.1
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 1.3e-06 56.6 42 52.4
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 1.3e-06 56.6 42 57.1
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 1.7e-06 56.2 50 52.0
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 1.7e-06 56.2 41 56.1
Haze_10296 Corylus avellana HOM05D003497 ORTHO05D003964 1.7e-06 56.2 60 43.3
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 1.7e-06 56.2 50 50.0
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 1.7e-06 56.2 64 45.3
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 2.2e-06 55.8 40 55.0
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 2.2e-06 55.8 40 55.0
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 2.2e-06 55.8 42 57.1
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 2.2e-06 55.8 41 56.1
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 2.2e-06 55.8 46 54.3
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.8e-06 55.5 44 52.3
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 2.8e-06 55.5 53 49.1
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 2.8e-06 55.5 46 56.5
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 2.8e-06 55.5 51 54.9
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 2.8e-06 55.5 41 53.7
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 3.7e-06 55.1 42 47.6
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 3.7e-06 55.1 42 54.8
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 3.7e-06 55.1 40 55.0
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 3.7e-06 55.1 87 37.9
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 4.8e-06 54.7 42 54.8
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 4.8e-06 54.7 69 46.4
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 4.8e-06 54.7 48 52.1
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 4.8e-06 54.7 101 37.6
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 4.8e-06 54.7 77 36.4
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 4.8e-06 54.7 53 43.4
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 4.8e-06 54.7 97 36.1
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 6.3e-06 54.3 56 44.6
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 6.3e-06 54.3 56 44.6
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 8.2e-06 53.9 50 46.0
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 8.2e-06 53.9 50 46.0
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 8.2e-06 53.9 42 54.8
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 8.2e-06 53.9 68 44.1
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 8.2e-06 53.9 42 54.8
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 8.2e-06 53.9 40 57.5


User provided reference genes

Program Settings