Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb051190 Zea mays HOM05D000094 ORTHO05D037109 3.7e-39 164.9 80 100.0
Zm00001eb066630 Zea mays HOM05D000094 ORTHO05D000455 2.0e-37 159.1 80 98.8
Zm00001eb355000 Zea mays HOM05D000094 ORTHO05D037109 7.5e-24 114.0 56 98.2
Os04g0672100 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D000455 2.5e-19 99.0 61 80.3
Os04g0672600 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D037109 2.2e-15 85.9 60 70.0
DCAR_001751 Daucus carota HOM05D000029 ORTHO05D000854 7.5e-08 60.8 69 43.5
PGR142G3412 Punica granatum HOM05D000094 ORTHO05D000455 7.5e-08 60.8 82 43.9
HPP92_009053 Vanilla planifolia HOM05D000094 ORTHO05D000455 7.5e-08 60.8 81 44.4
COL.COLO4_27660 Corchorus olitorius HOM05D000094 ORTHO05D000455 9.9e-08 60.5 83 41.0
Duzib251G0373 Durio zibethinus HOM05D000094 ORTHO05D000455 1.3e-07 60.1 80 40.0
Thecc.02G310800 Theobroma cacao HOM05D000094 ORTHO05D000455 1.3e-07 60.1 74 41.9
CAN.G855.6 Capsicum annuum HOM05D000029 ORTHO05D000854 1.7e-07 59.7 67 40.3
Nitab4.5_0000787g0160 Nicotiana tabacum HOM05D000029 ORTHO05D000854 1.7e-07 59.7 68 39.7
HPP92_007302 Vanilla planifolia HOM05D000094 ORTHO05D000455 1.7e-07 59.7 84 45.2
Aa31LG7G13790 Aethionema arabicum HOM05D000094 ORTHO05D000455 2.9e-07 58.9 75 41.3
Thhalv10003581m.g Eutrema salsugineum HOM05D000094 ORTHO05D000455 2.9e-07 58.9 82 39.0
Lsat_1_v5_gn_7_76261 Lactuca sativa HOM05D000029 ORTHO05D000854 2.9e-07 58.9 67 41.8
Duzib268G0984 Durio zibethinus HOM05D000094 ORTHO05D000455 3.7e-07 58.5 78 39.7
CAN.G282.77 Capsicum annuum HOM05D000094 ORTHO05D000455 4.9e-07 58.2 74 43.2
Cc03_g11610 Coffea canephora HOM05D000094 ORTHO05D000455 6.4e-07 57.8 75 41.3
Cc05_g11860 Coffea canephora HOM05D000094 ORTHO05D000455 6.4e-07 57.8 75 41.3
Lj9C298G7 Lonicera japonica HOM05D000029 ORTHO05D000854 8.3e-07 57.4 67 41.8
Nitab4.5_0008934g0010 Nicotiana tabacum HOM05D000029 ORTHO05D000854 8.3e-07 57.4 68 39.7
Aa31LG2G7750 Aethionema arabicum HOM05D000094 ORTHO05D000455 1.1e-06 57.0 82 37.8
RcHm_v2.0_Chr4g0446161 Rosa chinensis HOM05D000094 ORTHO05D000455 1.1e-06 57.0 83 39.8
AT2G02220 Arabidopsis thaliana HOM05D000094 ORTHO05D000455 1.4e-06 56.6 81 39.5
Cc02_g23200 Coffea canephora HOM05D000029 ORTHO05D000854 1.4e-06 56.6 67 40.3
Peaxi162Scf00011g01324 Petunia axillaris HOM05D000029 ORTHO05D000854 2.4e-06 55.8 79 35.4
TPR.G7959 Trifolium pratense HOM05D000094 ORTHO05D000455 2.4e-06 55.8 80 40.0
DCAR_029179 Daucus carota HOM05D000029 ORTHO05D000854 3.2e-06 55.5 67 41.8
ECA236G4541 Erigeron canadensis HOM05D000029 ORTHO05D000854 3.2e-06 55.5 67 40.3
SalBow3G0860 Salvia bowleyana HOM05D000029 ORTHO05D000854 3.2e-06 55.5 68 39.7
Hund15455 Selenicereus undatus HOM05D000029 ORTHO05D000854 3.2e-06 55.5 74 36.5
Cc11_g02830 Coffea canephora HOM05D000094 ORTHO05D000455 4.1e-06 55.1 80 36.2
DCAR_013115 Daucus carota HOM05D000094 ORTHO05D000455 4.1e-06 55.1 81 39.5
RcHm_v2.0_Chr4g0446501 Rosa chinensis HOM05D000094 ORTHO05D000455 4.1e-06 55.1 91 35.2
PGSC0003DMG400024890 Solanum tuberosum HOM05D000029 ORTHO05D000854 4.1e-06 55.1 67 40.3
Os07g0107800 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D000455 5.4e-06 54.7 69 44.9
Potri.004G223900 Populus trichocarpa HOM05D000029 ORTHO05D000854 5.4e-06 54.7 80 36.2
Ah.09g224410 Amaranthus hybridus HOM05D000029 ORTHO05D000854 7.1e-06 54.3 68 38.2
arahy.Tifrunner.gnm1.ann1.3GIK5E Arachis hypogaea HOM05D000029 ORTHO05D000854 7.1e-06 54.3 68 38.2
Os06g0185966 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D000010 7.1e-06 54.3 69 53.6
Actinidia39000 Actinidia chinensis HOM05D000029 ORTHO05D000854 9.2e-06 53.9 68 41.2
EL10Ac8g18780 Beta vulgaris HOM05D000029 ORTHO05D000854 9.2e-06 53.9 76 36.8
Duzib132G1157 Durio zibethinus HOM05D000029 ORTHO05D000854 9.2e-06 53.9 80 33.8
Nitab4.5_0001241g0120 Nicotiana tabacum HOM05D000094 ORTHO05D000455 9.2e-06 53.9 83 42.2


User provided reference genes

Program Settings