Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb050360 Zea mays HOM05D007724 ORTHO05D009363 2.3e-97 359.0 191 100.0
Zm00001eb163490 Zea mays HOM05D007724 ORTHO05D009363 9.7e-16 87.8 51 90.2
Zm00001eb214140 Zea mays HOM05D000263 ORTHO05D009363 4.8e-15 85.5 102 56.9
Zm00001eb099230 Zea mays HOM05D007724 ORTHO05D009363 1.4e-14 84.0 50 90.0
Zm00001eb198090 Zea mays HOM05D007724 ORTHO05D009363 1.4e-14 84.0 51 84.3
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 5.3e-14 82.0 52 82.7
Zm00001eb378290 Zea mays HOM05D007724 ORTHO05D009363 5.3e-14 82.0 51 84.3
Zm00001eb416350 Zea mays HOM05D007724 ORTHO05D009363 7.0e-14 81.6 51 84.3
Zm00001eb024410 Zea mays HOM05D007724 ORTHO05D009363 9.1e-14 81.3 55 80.0
Zm00001eb028320 Zea mays HOM05D007724 ORTHO05D009363 9.1e-14 81.3 51 84.3
Zm00001eb077660 Zea mays HOM05D007724 ORTHO05D009363 2.0e-13 80.1 61 73.8
Zm00001eb016360 Zea mays HOM05D007724 ORTHO05D009363 5.9e-13 78.6 51 80.4
Zm00001eb091310 Zea mays HOM05D007724 ORTHO05D009363 5.9e-13 78.6 51 82.4
Zm00001eb275840 Zea mays HOM05D007724 ORTHO05D009363 5.9e-13 78.6 51 84.3
Zm00001eb130010 Zea mays HOM05D007724 ORTHO05D009363 7.7e-13 78.2 49 83.7
Zm00001eb130100 Zea mays HOM05D007724 ORTHO05D009363 7.7e-13 78.2 51 84.3
Zm00001eb275800 Zea mays HOM05D007724 ORTHO05D009363 7.7e-13 78.2 51 84.3
Zm00001eb060180 Zea mays HOM05D007724 ORTHO05D009363 1.0e-12 77.8 51 80.4
Zm00001eb264560 Zea mays HOM05D007724 ORTHO05D009363 1.3e-12 77.4 51 82.4
Zm00001eb008960 Zea mays HOM05D007724 ORTHO05D009363 1.7e-12 77.0 49 83.7
Zm00001eb272910 Zea mays HOM05D007724 ORTHO05D009363 2.2e-12 76.6 53 79.2
Zm00001eb282370 Zea mays HOM05D007724 ORTHO05D009363 2.2e-12 76.6 50 82.0
Zm00001eb079160 Zea mays HOM05D007724 ORTHO05D009363 2.9e-12 76.3 51 82.4
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 2.9e-12 76.3 53 75.5
Zm00001eb157750 Zea mays HOM05D007724 ORTHO05D009363 2.9e-12 76.3 63 73.0
Zm00001eb235670 Zea mays HOM05D007724 ORTHO05D009363 2.9e-12 76.3 51 82.4
Zm00001eb334580 Zea mays HOM05D007724 ORTHO05D009363 2.9e-12 76.3 51 82.4
Zm00001eb409810 Zea mays HOM05D007724 ORTHO05D009363 2.9e-12 76.3 51 78.4
Zm00001eb143040 Zea mays HOM05D007724 ORTHO05D000361 3.8e-12 75.9 51 80.4
Zm00001eb285830 Zea mays HOM05D000389 ORTHO05D000287 3.8e-12 75.9 44 86.4
Zm00001eb005470 Zea mays HOM05D007724 ORTHO05D009363 5.0e-12 75.5 51 80.4
Zm00001eb048430 Zea mays HOM05D007724 ORTHO05D009363 5.0e-12 75.5 55 76.4
Zm00001eb316680 Zea mays HOM05D007724 ORTHO05D009363 5.0e-12 75.5 150 44.7
Zm00001eb023750 Zea mays HOM05D007724 ORTHO05D009363 6.5e-12 75.1 51 80.4
Zm00001eb259640 Zea mays HOM05D000034 ORTHO05D000277 6.5e-12 75.1 51 78.4
Zm00001eb088550 Zea mays HOM05D007724 ORTHO05D009363 8.5e-12 74.7 80 58.8
Zm00001eb197540 Zea mays HOM05D007724 ORTHO05D009363 8.5e-12 74.7 50 82.0
Zm00001eb297850 Zea mays HOM05D007724 ORTHO05D009363 8.5e-12 74.7 51 78.4
Zm00001eb012370 Zea mays HOM05D007724 ORTHO05D009363 1.1e-11 74.3 106 51.9
Zm00001eb082520 Zea mays HOM05D007724 ORTHO05D009363 1.1e-11 74.3 49 77.6
Zm00001eb140710 Zea mays HOM05D007724 ORTHO05D009363 1.1e-11 74.3 51 80.4
Zm00001eb142470 Zea mays HOM05D007724 ORTHO05D009363 1.1e-11 74.3 64 68.8
Zm00001eb175480 Zea mays HOM05D007724 ORTHO05D009363 1.1e-11 74.3 53 77.4
Zm00001eb196660 Zea mays HOM05D007724 ORTHO05D009363 1.1e-11 74.3 51 78.4
Zm00001eb187790 Zea mays HOM05D007724 ORTHO05D009363 1.9e-11 73.6 60 68.3
Zm00001eb223110 Zea mays HOM05D007724 ORTHO05D009363 1.9e-11 73.6 79 59.5
Zm00001eb364550 Zea mays HOM05D007724 ORTHO05D009363 2.5e-11 73.2 51 80.4
Zm00001eb415200 Zea mays HOM05D007724 ORTHO05D009363 2.5e-11 73.2 71 62.0
Zm00001eb288460 Zea mays HOM05D007724 ORTHO05D009363 3.2e-11 72.8 51 78.4
Zm00001eb336230 Zea mays HOM05D007724 ORTHO05D009363 3.2e-11 72.8 51 76.5
Zm00001eb170780 Zea mays HOM05D007724 ORTHO05D009363 4.2e-11 72.4 53 73.6
Zm00001eb112860 Zea mays HOM05D007724 ORTHO05D009363 5.5e-11 72.0 44 81.8
Zm00001eb220350 Zea mays HOM05D007724 ORTHO05D009363 5.5e-11 72.0 51 74.5
Zm00001eb040960 Zea mays HOM05D007724 ORTHO05D009363 7.2e-11 71.6 45 82.2
Zm00001eb386600 Zea mays HOM05D007724 ORTHO05D009363 7.2e-11 71.6 45 82.2
Zm00001eb235960 Zea mays HOM05D007724 ORTHO05D009363 1.2e-10 70.9 50 78.0
Zm00001eb400140 Zea mays HOM05D007724 ORTHO05D009363 1.2e-10 70.9 51 76.5
Zm00001eb400150 Zea mays HOM05D007724 ORTHO05D009363 1.2e-10 70.9 51 76.5
Zm00001eb115070 Zea mays HOM05D007724 ORTHO05D009363 2.1e-10 70.1 51 76.5
Zm00001eb230450 Zea mays HOM05D007724 ORTHO05D009363 2.7e-10 69.7 44 81.8
Zm00001eb389510 Zea mays HOM05D007724 ORTHO05D009363 4.7e-10 68.9 40 87.5
Zm00001eb153690 Zea mays HOM05D007724 ORTHO05D009363 3.0e-09 66.2 68 60.3
Zm00001eb154770 Zea mays HOM05D007724 ORTHO05D009363 3.0e-09 66.2 92 51.1
Zm00001eb015300 Zea mays HOM05D007724 ORTHO05D009363 4.0e-09 65.9 61 62.3
Zm00001eb006780 Zea mays HOM05D000100 ORTHO05D000052 5.2e-09 65.5 49 75.5
Zm00001eb090270 Zea mays HOM05D007724 ORTHO05D009363 5.2e-09 65.5 82 53.7
Zm00001eb425330 Zea mays HOM05D007724 ORTHO05D009363 5.2e-09 65.5 44 81.8
Zm00001eb118310 Zea mays HOM05D007724 ORTHO05D009363 6.8e-09 65.1 44 75.0
Zm00001eb039580 Zea mays HOM05D007724 ORTHO05D009363 8.8e-09 64.7 39 84.6
Zm00001eb136520 Zea mays HOM05D007724 ORTHO05D009363 8.8e-09 64.7 39 87.2
Zm00001eb297710 Zea mays HOM05D007724 ORTHO05D009363 8.8e-09 64.7 49 75.5
Zm00001eb170010 Zea mays HOM05D007724 ORTHO05D009363 1.2e-08 64.3 43 81.4
Zm00001eb225800 Zea mays HOM05D007724 ORTHO05D009363 1.2e-08 64.3 132 43.9
Zm00001eb387000 Zea mays HOM05D007724 ORTHO05D009363 1.5e-08 63.9 44 77.3
Zm00001eb410610 Zea mays HOM05D007724 ORTHO05D009363 1.5e-08 63.9 41 78.0
Zm00001eb351160 Zea mays HOM05D027772 ORTHO05D009363 2.0e-08 63.5 43 79.1
QL03p019108 Quercus lobata HOM05D000389 ORTHO05D000287 2.6e-08 63.2 45 64.4
Sed0001426 Sechium edule HOM05D000389 ORTHO05D000287 2.6e-08 63.2 45 66.7
Zm00001eb047710 Zea mays HOM05D007724 ORTHO05D009363 2.6e-08 63.2 51 70.6
Zm00001eb109760 Zea mays HOM05D007724 ORTHO05D009363 2.6e-08 63.2 44 77.3
Zm00001eb123120 Zea mays HOM05D007724 ORTHO05D009363 2.6e-08 63.2 59 64.4
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 2.6e-08 63.2 46 69.6
Sed0024880 Sechium edule HOM05D000389 ORTHO05D000287 4.4e-08 62.4 45 62.2
Zm00001eb121280 Zea mays HOM05D007724 ORTHO05D009363 4.4e-08 62.4 49 71.4
Zm00001eb340660 Zea mays HOM05D007724 ORTHO05D009363 4.4e-08 62.4 44 77.3
Zm00001eb361060 Zea mays HOM05D007724 ORTHO05D009363 4.4e-08 62.4 132 47.0
Zm00001eb413060 Zea mays HOM05D007724 ORTHO05D009363 4.4e-08 62.4 43 74.4
ClCG03G017610 Citrullus lanatus HOM05D000389 ORTHO05D000287 5.7e-08 62.0 46 65.2
CiPaw.07G025100 Carya illinoinensis HOM05D000389 ORTHO05D000287 7.5e-08 61.6 45 64.4
ClCG02G015200 Citrullus lanatus HOM05D000389 ORTHO05D000287 7.5e-08 61.6 45 66.7
HPP92_006908 Vanilla planifolia HOM05D000389 ORTHO05D000287 7.5e-08 61.6 46 65.2
Zm00001eb284660 Zea mays HOM05D007724 ORTHO05D009363 9.8e-08 61.2 56 66.1
Zm00001eb267760 Zea mays HOM05D007724 ORTHO05D009363 1.3e-07 60.8 107 48.6
Os05g0358500 Oryza sativa ssp. japonica HOM05D000389 ORTHO05D000287 1.7e-07 60.5 73 54.8
CSS0000277 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 2.2e-07 60.1 45 62.2
CSS0020870 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 2.2e-07 60.1 45 62.2
Hma1.2p1_1441F.1_g283650 Hydrangea macrophylla HOM05D000389 ORTHO05D000287 2.8e-07 59.7 46 63.0
Lalb_Chr04g0260571 Lupinus albus HOM05D000389 ORTHO05D000287 2.8e-07 59.7 45 62.2
Zm00001eb410810 Zea mays HOM05D007724 ORTHO05D009363 2.8e-07 59.7 43 76.7
Actinidia21505 Actinidia chinensis HOM05D000389 ORTHO05D000287 3.7e-07 59.3 44 63.6
TAR633G1297 Trochodendron aralioides HOM05D000389 ORTHO05D000287 3.7e-07 59.3 46 60.9
Zm00001eb279080 Zea mays HOM05D007724 ORTHO05D009363 3.7e-07 59.3 44 72.7
arahy.Tifrunner.gnm1.ann1.73HB7C Arachis hypogaea HOM05D000389 ORTHO05D000287 4.8e-07 58.9 45 57.8
Glyma.03G233500 Glycine max HOM05D000389 ORTHO05D000287 4.8e-07 58.9 45 60.0
Glyma.10G150100 Glycine max HOM05D000389 ORTHO05D000287 4.8e-07 58.9 46 56.5
Glyma.19G230600 Glycine max HOM05D000389 ORTHO05D000287 4.8e-07 58.9 45 60.0
Glyma.20G238100 Glycine max HOM05D000389 ORTHO05D000287 4.8e-07 58.9 46 56.5
HPP92_025198 Vanilla planifolia HOM05D000389 ORTHO05D000287 4.8e-07 58.9 54 53.7
arahy.Tifrunner.gnm1.ann1.KMJ8U9 Arachis hypogaea HOM05D000389 ORTHO05D000287 6.3e-07 58.5 46 58.7
arahy.Tifrunner.gnm1.ann1.WF4DDX Arachis hypogaea HOM05D000389 ORTHO05D000287 6.3e-07 58.5 45 55.6
AUR62005240 Chenopodium quinoa HOM05D000389 ORTHO05D000287 6.3e-07 58.5 41 68.3
MELO3C004209.2 Cucumis melo HOM05D000389 ORTHO05D000287 6.3e-07 58.5 43 65.1
CsaV3_2G006810 Cucumis sativus L. HOM05D000389 ORTHO05D000287 6.3e-07 58.5 43 65.1
CSS0046840 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 8.3e-07 58.2 45 60.0
Haze_04107 Corylus avellana HOM05D000389 ORTHO05D000287 8.3e-07 58.2 45 60.0
DCAR_029374 Daucus carota HOM05D000389 ORTHO05D000287 8.3e-07 58.2 45 62.2
Lsat_1_v5_gn_9_123920 Lactuca sativa HOM05D000389 ORTHO05D000287 8.3e-07 58.2 45 57.8
Nn4g25724 Nelumbo nucifera HOM05D000389 ORTHO05D000287 8.3e-07 58.2 44 61.4
Cc02_g34520 Coffea canephora HOM05D000389 ORTHO05D000287 1.1e-06 57.8 45 62.2
MELO3C015268.2 Cucumis melo HOM05D000389 ORTHO05D000287 1.1e-06 57.8 41 65.9
Duzib106G1919 Durio zibethinus HOM05D000389 ORTHO05D000287 1.1e-06 57.8 45 60.0
MD04G1197100 Malus domestica HOM05D000389 ORTHO05D000287 1.1e-06 57.8 45 60.0
Prupe.6G317600 Prunus persica HOM05D000389 ORTHO05D000287 1.1e-06 57.8 45 60.0
Thecc.05G317200 Theobroma cacao HOM05D000389 ORTHO05D000287 1.1e-06 57.8 45 60.0
Zm00001eb036500 Zea mays HOM05D007724 ORTHO05D009363 1.1e-06 57.8 44 72.7
Zm00001eb094830 Zea mays HOM05D007724 ORTHO05D009363 1.1e-06 57.8 63 58.7
HanXRQChr05g0148521 Helianthus annuus HOM05D000389 ORTHO05D000287 1.4e-06 57.4 46 52.2
PSO210G3855 Papaver somniferum HOM05D000389 ORTHO05D000287 1.4e-06 57.4 44 59.1
Phvul.007G198700 Phaseolus vulgaris HOM05D000389 ORTHO05D000287 1.4e-06 57.4 44 61.4
VMungo0720G1502 Vigna mungo HOM05D000389 ORTHO05D000287 1.4e-06 57.4 44 61.4
ATR0706G215 Amborella trichopoda HOM05D000389 ORTHO05D000287 1.8e-06 57.0 41 68.3
Gohir.A11G270500 Gossypium hirsutum HOM05D000389 ORTHO05D000287 1.8e-06 57.0 45 57.8
Gorai.007G302900 Gossypium raimondii HOM05D000389 ORTHO05D000287 1.8e-06 57.0 45 57.8
Lj1g0024341 Lotus japonicus HOM05D000389 ORTHO05D000287 1.8e-06 57.0 45 57.8
Zm00001eb140770 Zea mays HOM05D007724 ORTHO05D446486 1.8e-06 57.0 48 66.7
Aa31LG11G9650 Aethionema arabicum HOM05D000389 ORTHO05D000287 2.4e-06 56.6 43 62.8
CSS0013620 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 2.4e-06 56.6 45 57.8
AUR62000724 Chenopodium quinoa HOM05D000389 ORTHO05D000287 2.4e-06 56.6 41 65.9
Rhsim05G0136100 Rhododendron simsii HOM05D000389 ORTHO05D000287 2.4e-06 56.6 45 57.8
Zm00001eb061270 Zea mays HOM05D065094 ORTHO05D442690 2.4e-06 56.6 34 91.2
BcaB04g21434 Brassica carinata HOM05D000389 ORTHO05D000287 3.1e-06 56.2 44 56.8
Gohir.A13G110700 Gossypium hirsutum HOM05D000389 ORTHO05D000287 3.1e-06 56.2 45 57.8
Gohir.D13G113300 Gossypium hirsutum HOM05D000389 ORTHO05D000287 3.1e-06 56.2 45 57.8
Gorai.013G127100 Gossypium raimondii HOM05D000389 ORTHO05D000287 3.1e-06 56.2 45 57.8
Lalb_Chr06g0167601 Lupinus albus HOM05D000389 ORTHO05D000287 3.1e-06 56.2 46 56.5
Manes.03G199700 Manihot esculenta HOM05D000389 ORTHO05D000287 3.1e-06 56.2 43 58.1
Phvul.001G227100 Phaseolus vulgaris HOM05D000389 ORTHO05D000287 3.1e-06 56.2 43 60.5
Rhsim07G0194600 Rhododendron simsii HOM05D000389 ORTHO05D000287 3.1e-06 56.2 45 55.6
arahy.Tifrunner.gnm1.ann1.72HQJ5 Arachis hypogaea HOM05D000389 ORTHO05D000287 4.1e-06 55.8 46 56.5
ECA236G1415 Erigeron canadensis HOM05D000389 ORTHO05D000287 4.1e-06 55.8 45 55.6
Lalb_Chr15g0077521 Lupinus albus HOM05D000389 ORTHO05D000287 4.1e-06 55.8 45 57.8
MD12G1210000 Malus domestica HOM05D000389 ORTHO05D000287 4.1e-06 55.8 45 57.8
Potri.005G021900 Populus trichocarpa HOM05D000389 ORTHO05D000287 4.1e-06 55.8 45 57.8
PGR031G1680 Punica granatum HOM05D000389 ORTHO05D000287 4.1e-06 55.8 56 50.0
Sed0007861 Sechium edule HOM05D000389 ORTHO05D000287 4.1e-06 55.8 45 55.6
GSVIVG01035094001 Vitis vinifera HOM05D000389 ORTHO05D000287 4.1e-06 55.8 41 61.0
Atru.chr2.113 Acer truncatum HOM05D000389 ORTHO05D000287 5.4e-06 55.5 45 51.1
CSS0006988 Camellia sinensis var. sinensis HOM05D000389 ORTHO05D000287 5.4e-06 55.5 43 58.1
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 5.4e-06 55.5 44 56.8
Duzib177G0966 Durio zibethinus HOM05D000389 ORTHO05D000287 5.4e-06 55.5 46 54.3
Migut.G00121 Erythranthe guttata HOM05D000389 ORTHO05D000287 5.4e-06 55.5 40 60.0
Eucgr.H03267 Eucalyptus grandis HOM05D000389 ORTHO05D000287 5.4e-06 55.5 45 55.6
HanXRQChr11g0340081 Helianthus annuus HOM05D000389 ORTHO05D000287 5.4e-06 55.5 45 55.6
vmacro08102 Vaccinium macrocarpon HOM05D000389 ORTHO05D000287 5.4e-06 55.5 43 58.1
Zm00001eb280590 Zea mays HOM05D065094 ORTHO05D443127 5.4e-06 55.5 58 62.1
Ca_09332_v3 Cicer arietinum L. HOM05D000389 ORTHO05D000287 7.0e-06 55.1 44 56.8
Ca_10152_v3 Cicer arietinum L. HOM05D000389 ORTHO05D000287 7.0e-06 55.1 42 61.9
Cc03_g01410 Coffea canephora HOM05D000389 ORTHO05D000287 7.0e-06 55.1 43 60.5
Dinv24405 Davidia involucrata HOM05D000389 ORTHO05D000287 7.0e-06 55.1 45 57.8
Dinv30843 Davidia involucrata HOM05D000389 ORTHO05D000287 7.0e-06 55.1 47 57.4
FvH4_4g18870 Fragaria vesca HOM05D000389 ORTHO05D000287 7.0e-06 55.1 46 52.2
FAN07G2820 Fragaria x ananassa HOM05D002249 ORTHO05D002443 7.0e-06 55.1 46 52.2
FAN12G2630 Fragaria x ananassa HOM05D002249 ORTHO05D002443 7.0e-06 55.1 46 52.2
FAN12G2948 Fragaria x ananassa HOM05D002249 ORTHO05D002443 7.0e-06 55.1 46 52.2
Gohir.A08G207800 Gossypium hirsutum HOM05D000389 ORTHO05D000287 7.0e-06 55.1 45 57.8
Gohir.D08G224500 Gossypium hirsutum HOM05D000389 ORTHO05D000287 7.0e-06 55.1 45 57.8
Gorai.004G238400 Gossypium raimondii HOM05D000389 ORTHO05D000287 7.0e-06 55.1 45 57.8
Medtr2g435550 Medicago truncatula HOM05D000389 ORTHO05D000287 7.0e-06 55.1 43 53.5
Oeu054007.1 Olea europaea HOM05D000389 ORTHO05D000287 7.0e-06 55.1 43 58.1
SalBow2G2191 Salvia bowleyana HOM05D000389 ORTHO05D000287 7.0e-06 55.1 39 64.1
THA.LOC104818735 Tarenaya hassleriana HOM05D000389 ORTHO05D000287 7.0e-06 55.1 45 55.6
Ciclev10001565m.g Citrus clementina HOM05D000389 ORTHO05D000287 9.1e-06 54.7 45 55.6
DCAR_003374 Daucus carota HOM05D000389 ORTHO05D000287 9.1e-06 54.7 44 59.1
Lj5C346T1 Lonicera japonica HOM05D000389 ORTHO05D000287 9.1e-06 54.7 43 60.5
Lj5g0004732 Lotus japonicus HOM05D000389 ORTHO05D000287 9.1e-06 54.7 44 54.5
RcHm_v2.0_Chr4g0423771 Rosa chinensis HOM05D000389 ORTHO05D000287 9.1e-06 54.7 46 50.0
Sabra05G0027800 Salix brachista HOM05D000389 ORTHO05D000287 9.1e-06 54.7 45 53.3
VMungo1383G3266 Vigna mungo HOM05D000389 ORTHO05D000287 9.1e-06 54.7 43 58.1


User provided reference genes

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