Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb050180 Zea mays HOM05D021837 ORTHO05D000163 1.9e-80 302.4 144 100.0
Zm00001eb050170 Zea mays HOM05D021837 ORTHO05D000163 5.6e-40 167.9 94 85.1
Zm00001eb050160 Zea mays HOM05D021837 ORTHO05D000163 6.2e-39 164.5 94 83.0
Zm00001eb050150 Zea mays HOM05D021837 ORTHO05D000163 1.7e-33 146.4 96 74.0
Zm00001eb050200 Zea mays HOM05D021837 ORTHO05D000163 2.4e-30 136.0 98 71.4
Zm00001eb051810 Zea mays HOM05D021837 ORTHO05D000163 1.6e-23 113.2 102 60.8
Os03g0607200 Oryza sativa ssp. japonica HOM05D000270 ORTHO05D000163 3.4e-13 79.0 72 55.6
Potri.014G020100 Populus trichocarpa HOM05D000270 ORTHO05D000163 3.0e-09 65.9 89 43.8
Sabra14G0013100 Salix brachista HOM05D000270 ORTHO05D000163 3.9e-09 65.5 89 42.7
Gohir.A03G184900 Gossypium hirsutum HOM05D000270 ORTHO05D000163 5.1e-09 65.1 65 49.2
Gorai.005G233800 Gossypium raimondii HOM05D000270 ORTHO05D000163 5.1e-09 65.1 65 49.2
Sabra09G0025300 Salix brachista HOM05D000270 ORTHO05D000163 5.1e-09 65.1 90 43.3
HPP92_026497 Vanilla planifolia HOM05D000270 ORTHO05D000163 5.1e-09 65.1 88 40.9
Manes.05G179800 Manihot esculenta HOM05D000270 ORTHO05D000163 6.7e-09 64.7 89 41.6
HPP92_014236 Vanilla planifolia HOM05D000270 ORTHO05D000163 6.7e-09 64.7 88 40.9
Glyma.17G237100 Glycine max HOM05D000270 ORTHO05D000163 8.7e-09 64.3 89 42.7
Manes.18G043700 Manihot esculenta HOM05D000270 ORTHO05D000163 1.5e-08 63.5 120 36.7
MSTRG.24361 Avicennia marina HOM05D000270 ORTHO05D000163 1.9e-08 63.2 90 42.2
Zm00001eb214350 Zea mays HOM05D000270 ORTHO05D000163 2.5e-08 62.8 93 39.8
Gohir.A04G119100 Gossypium hirsutum HOM05D000270 ORTHO05D000163 3.3e-08 62.4 66 47.0
Gohir.D04G160800 Gossypium hirsutum HOM05D000270 ORTHO05D000163 3.3e-08 62.4 66 47.0
Gorai.012G148600 Gossypium raimondii HOM05D000270 ORTHO05D000163 3.3e-08 62.4 66 47.0
Os03g0760800 Oryza sativa ssp. japonica HOM05D000270 ORTHO05D000163 3.3e-08 62.4 74 45.9
MSTRG.25050 Avicennia marina HOM05D000270 ORTHO05D000163 4.3e-08 62.0 96 40.6
Duzib187G1513 Durio zibethinus HOM05D000270 ORTHO05D000163 4.3e-08 62.0 67 46.3
Thecc.02G112300 Theobroma cacao HOM05D000270 ORTHO05D000163 5.6e-08 61.6 91 41.8
Atru.chr13.794 Acer truncatum HOM05D000270 ORTHO05D000163 7.4e-08 61.2 86 39.5
Atru.chr13.797 Acer truncatum HOM05D000270 ORTHO05D000163 7.4e-08 61.2 86 40.7
Hma1.2p1_0210F.1_g089680 Hydrangea macrophylla HOM05D000270 ORTHO05D000163 7.4e-08 61.2 90 38.9
Duzib041G0741 Durio zibethinus HOM05D000270 ORTHO05D000163 9.6e-08 60.8 86 40.7
Duzib116G0279 Durio zibethinus HOM05D000270 ORTHO05D000163 9.6e-08 60.8 88 37.5
THA.LOC104799796 Tarenaya hassleriana HOM05D000270 ORTHO05D000163 9.6e-08 60.8 61 47.5
GSVIVG01037887001 Vitis vinifera HOM05D000270 ORTHO05D000163 9.6e-08 60.8 87 41.4
Actinidia08262 Actinidia chinensis HOM05D000270 ORTHO05D000163 1.6e-07 60.1 93 40.9
COL.COLO4_32561 Corchorus olitorius HOM05D000270 ORTHO05D000163 1.6e-07 60.1 89 40.4
Dinv39235 Davidia involucrata HOM05D000270 ORTHO05D000163 1.6e-07 60.1 89 41.6
Peaxi162Scf00219g00078 Petunia axillaris HOM05D000270 ORTHO05D000163 1.6e-07 60.1 87 41.4
Peaxi162Scf00219g00718 Petunia axillaris HOM05D000270 ORTHO05D000163 1.6e-07 60.1 86 39.5
ClCG08G016310 Citrullus lanatus HOM05D000270 ORTHO05D000163 2.1e-07 59.7 94 38.3
Duzib093G0854 Durio zibethinus HOM05D000270 ORTHO05D000163 2.1e-07 59.7 90 38.9
Duzib264G0392 Durio zibethinus HOM05D000270 ORTHO05D000163 2.1e-07 59.7 67 43.3
SalBow6G2104 Salvia bowleyana HOM05D000270 ORTHO05D000163 2.1e-07 59.7 96 37.5
Atru.chr5.2429 Acer truncatum HOM05D000270 ORTHO05D000163 2.8e-07 59.3 85 38.8
Cfa004614 Carpinus fangiana HOM05D000270 ORTHO05D000163 2.8e-07 59.3 90 43.3
Duzib264G0445 Durio zibethinus HOM05D000270 ORTHO05D000163 2.8e-07 59.3 67 43.3
Gohir.D06G019750 Gossypium hirsutum HOM05D000270 ORTHO05D000163 2.8e-07 59.3 88 39.8
Gorai.010G024200 Gossypium raimondii HOM05D000270 ORTHO05D000163 2.8e-07 59.3 88 39.8
TWI12G0761 Tripterygium wilfordii HOM05D000270 ORTHO05D000163 2.8e-07 59.3 98 36.7
TWI31G0407 Tripterygium wilfordii HOM05D000270 ORTHO05D000163 2.8e-07 59.3 66 47.0
CSS0043093 Camellia sinensis var. sinensis HOM05D000270 ORTHO05D000163 3.7e-07 58.9 91 38.5
Duzib264G0366 Durio zibethinus HOM05D000270 ORTHO05D000163 3.7e-07 58.9 67 43.3
ECA247G3856 Erigeron canadensis HOM05D000270 ORTHO05D000163 3.7e-07 58.9 96 39.6
Phvul.001G025800 Phaseolus vulgaris HOM05D000270 ORTHO05D000163 3.7e-07 58.9 93 39.8
GSVIVG01009384001 Vitis vinifera HOM05D000270 ORTHO05D000163 3.7e-07 58.9 94 37.2
Cpa.g.sc292.7 Carica papaya HOM05D000270 ORTHO05D000163 4.8e-07 58.5 67 44.8
Lalb_Chr11g0062791 Lupinus albus HOM05D000270 ORTHO05D000163 4.8e-07 58.5 89 38.2
PGSC0003DMG400018474 Solanum tuberosum HOM05D000270 ORTHO05D000163 4.8e-07 58.5 90 37.8
CAN.G588.20 Capsicum annuum HOM05D000270 ORTHO05D000163 6.2e-07 58.2 111 38.7
CDE06G0615 Ceratophyllum demersum HOM05D000270 ORTHO05D000163 6.2e-07 58.2 91 39.6
DCAR_001662 Daucus carota HOM05D000270 ORTHO05D000163 6.2e-07 58.2 90 40.0
Eucgr.F02269 Eucalyptus grandis HOM05D000270 ORTHO05D000163 6.2e-07 58.2 93 38.7
Medtr3g102660 Medicago truncatula HOM05D000270 ORTHO05D000163 6.2e-07 58.2 84 41.7
Oeu022068.1 Olea europaea HOM05D000270 ORTHO05D000163 6.2e-07 58.2 89 40.4
PSO541G6055 Papaver somniferum HOM05D000270 ORTHO05D000163 6.2e-07 58.2 90 42.2
PSO675G8910 Papaver somniferum HOM05D000270 ORTHO05D000163 6.2e-07 58.2 90 42.2
RcHm_v2.0_Chr6g0254301 Rosa chinensis HOM05D000270 ORTHO05D000163 6.2e-07 58.2 88 38.6
CsaV3_2G026300 Cucumis sativus L. HOM05D000270 ORTHO05D000163 8.1e-07 57.8 86 39.5
Peaxi162Scf00060g02215 Petunia axillaris HOM05D000270 ORTHO05D000163 8.1e-07 57.8 66 43.9
TAR625G0163 Trochodendron aralioides HOM05D000270 ORTHO05D000163 8.1e-07 57.8 89 41.6
GSVIVG01000168001 Vitis vinifera HOM05D000270 ORTHO05D000163 8.1e-07 57.8 67 43.3
Carub.0001s1005 Capsella rubella HOM05D000270 ORTHO05D000163 1.1e-06 57.4 88 39.8
Duzib132G0053 Durio zibethinus HOM05D000270 ORTHO05D000163 1.1e-06 57.4 88 39.8
Potri.001G297700 Populus trichocarpa HOM05D000270 ORTHO05D000163 1.1e-06 57.4 90 42.2
PGR031G3563 Punica granatum HOM05D000270 ORTHO05D000163 1.1e-06 57.4 93 36.6
Atru.chr13.1785 Acer truncatum HOM05D000270 ORTHO05D000163 1.4e-06 57.0 92 39.1
CiPaw.05G014000 Carya illinoinensis HOM05D000270 ORTHO05D000163 1.4e-06 57.0 90 41.1
CiPaw.15G046600 Carya illinoinensis HOM05D000270 ORTHO05D000163 1.4e-06 57.0 89 39.3
FAN20G1293 Fragaria x ananassa HOM05D000270 ORTHO05D000163 1.4e-06 57.0 89 37.1
Gohir.A05G207500 Gossypium hirsutum HOM05D000270 ORTHO05D000163 1.4e-06 57.0 86 40.7
Gohir.D05G210900 Gossypium hirsutum HOM05D000270 ORTHO05D000163 1.4e-06 57.0 86 40.7
Gorai.009G217400 Gossypium raimondii HOM05D000270 ORTHO05D000163 1.4e-06 57.0 86 40.7
arahy.Tifrunner.gnm1.ann1.TJLQ2T Arachis hypogaea HOM05D000270 ORTHO05D000163 1.8e-06 56.6 90 40.0
Carub.0251s0002 Capsella rubella HOM05D000270 ORTHO05D000163 1.8e-06 56.6 93 38.7
COL.COLO4_28550 Corchorus olitorius HOM05D000270 ORTHO05D000163 1.8e-06 56.6 70 42.9
Migut.C00509 Erythranthe guttata HOM05D000270 ORTHO05D000163 1.8e-06 56.6 67 41.8
Eucgr.G01682 Eucalyptus grandis HOM05D000270 ORTHO05D000163 1.8e-06 56.6 98 37.8
Lalb_Chr23g0267381 Lupinus albus HOM05D000270 ORTHO05D000163 1.8e-06 56.6 89 38.2
Cpa.g.sc21.121 Carica papaya HOM05D000270 ORTHO05D000163 2.4e-06 56.2 89 39.3
Dinv31842 Davidia involucrata HOM05D000270 ORTHO05D000163 2.4e-06 56.2 65 47.7
Dinv40378 Davidia involucrata HOM05D000270 ORTHO05D000163 2.4e-06 56.2 93 38.7
Glyma.06G044400 Glycine max HOM05D000270 ORTHO05D000163 2.4e-06 56.2 93 38.7
Lsat_1_v5_gn_1_23380 Lactuca sativa HOM05D000270 ORTHO05D000163 2.4e-06 56.2 90 37.8
Peaxi162Scf00449g00013 Petunia axillaris HOM05D000270 ORTHO05D000163 2.4e-06 56.2 65 44.6
Phvul.009G069900 Phaseolus vulgaris HOM05D000270 ORTHO05D000163 2.4e-06 56.2 86 38.4
Solyc08g005620.3 Solanum lycopersicum HOM05D000270 ORTHO05D000163 2.4e-06 56.2 90 36.7
CANSAT25G2246 Cannabis sativa HOM05D000270 ORTHO05D000163 3.1e-06 55.8 67 43.3
Cfa017882 Carpinus fangiana HOM05D000270 ORTHO05D000163 3.1e-06 55.8 93 36.6
CDE04G2159 Ceratophyllum demersum HOM05D000270 ORTHO05D000163 3.1e-06 55.8 91 38.5
Ciclev10002979m.g Citrus clementina HOM05D000270 ORTHO05D000163 3.1e-06 55.8 91 36.3
Gohir.A11G218300 Gossypium hirsutum HOM05D000270 ORTHO05D000163 3.1e-06 55.8 85 37.6
Gohir.D11G205300 Gossypium hirsutum HOM05D000270 ORTHO05D000163 3.1e-06 55.8 85 37.6
Gorai.007G220200 Gossypium raimondii HOM05D000270 ORTHO05D000163 3.1e-06 55.8 85 37.6
unitig_744.g24221 Utricularia gibba HOM05D000270 ORTHO05D000163 3.1e-06 55.8 100 38.0
Haze_18284 Corylus avellana HOM05D000270 ORTHO05D000163 4.0e-06 55.5 92 34.8
Os10g0115550 Oryza sativa ssp. japonica HOM05D000270 ORTHO05D000163 4.0e-06 55.5 65 49.2
Peaxi162Scf00081g00088 Petunia axillaris HOM05D000270 ORTHO05D000163 4.0e-06 55.5 90 37.8
Prupe.1G426700 Prunus persica HOM05D000270 ORTHO05D000163 4.0e-06 55.5 89 37.1
ATR0661G208 Amborella trichopoda HOM05D000270 ORTHO05D000163 5.3e-06 55.1 95 36.8
arahy.Tifrunner.gnm1.ann1.SY561U Arachis hypogaea HOM05D000270 ORTHO05D000163 5.3e-06 55.1 90 38.9
EL10As7g23819 Beta vulgaris HOM05D000270 ORTHO05D000163 5.3e-06 55.1 93 37.6
Carub.0005s0930 Capsella rubella HOM05D000270 ORTHO05D000163 5.3e-06 55.1 93 38.7
CAN.G1323.3 Capsicum annuum HOM05D000270 ORTHO05D000163 5.3e-06 55.1 89 40.4
Cpa.g.sc66.47 Carica papaya HOM05D000270 ORTHO05D000163 5.3e-06 55.1 67 46.3
Migut.C01154 Erythranthe guttata HOM05D000270 ORTHO05D000163 5.3e-06 55.1 67 41.8
Eucgr.I01086 Eucalyptus grandis HOM05D000270 ORTHO05D000163 5.3e-06 55.1 89 41.6
FvH4_2g33410 Fragaria vesca HOM05D000270 ORTHO05D000163 5.3e-06 55.1 89 36.0
FAN24G3096 Fragaria x ananassa HOM05D000270 ORTHO05D000163 5.3e-06 55.1 89 36.0
FAN27G0261 Fragaria x ananassa HOM05D000270 ORTHO05D000163 5.3e-06 55.1 89 36.0
Potri.009G092600 Populus trichocarpa HOM05D000270 ORTHO05D000163 5.3e-06 55.1 90 41.1
Sc15g0005520 Simmondsia chinensis HOM05D000270 ORTHO05D000163 5.3e-06 55.1 90 38.9
Sc15g0005800 Simmondsia chinensis HOM05D000270 ORTHO05D000163 5.3e-06 55.1 90 38.9
AL1G21430 Arabidopsis lyrata HOM05D000270 ORTHO05D000163 6.9e-06 54.7 88 37.5
HanXRQChr08g0211931 Helianthus annuus HOM05D000270 ORTHO05D000163 6.9e-06 54.7 89 38.2
Prupe.8G138600 Prunus persica HOM05D000270 ORTHO05D000163 6.9e-06 54.7 88 38.6
Migut.C01155 Erythranthe guttata HOM05D000270 ORTHO05D000163 9.0e-06 54.3 66 40.9
Migut.E01377 Erythranthe guttata HOM05D000270 ORTHO05D000163 9.0e-06 54.3 89 41.6
FAN20G0582 Fragaria x ananassa HOM05D000270 ORTHO05D000163 9.0e-06 54.3 65 46.2
MD05G1093700 Malus domestica HOM05D000270 ORTHO05D000163 9.0e-06 54.3 88 38.6
Peaxi162Scf00219g00712 Petunia axillaris HOM05D000270 ORTHO05D000163 9.0e-06 54.3 93 35.5
QL11p032321 Quercus lobata HOM05D000270 ORTHO05D000163 9.0e-06 54.3 89 39.3


User provided reference genes

Program Settings