Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb049980 Zea mays HOM05D007390 ORTHO05D009114 6.6e-125 453.0 235 100.0
BcaB08g35947 Brassica carinata HOM05D007390 ORTHO05D009114 1.7e-27 129.4 235 32.8
Nn5g29749 Nelumbo nucifera HOM05D007390 ORTHO05D009114 1.2e-25 123.2 159 40.3
Lsat_1_v5_gn_6_101541 Lactuca sativa HOM05D007390 ORTHO05D009114 6.0e-25 120.9 194 36.6
Rhsim04G0012100 Rhododendron simsii HOM05D007390 ORTHO05D009114 7.8e-25 120.6 188 37.8
HanXRQChr05g0162401 Helianthus annuus HOM05D007390 ORTHO05D009114 1.0e-24 120.2 194 35.6
AL8G31410 Arabidopsis lyrata HOM05D007390 ORTHO05D009114 2.3e-24 119.0 191 35.1
ECA246G4229 Erigeron canadensis HOM05D000587 ORTHO05D009114 2.3e-24 119.0 194 35.6
Actinidia35406 Actinidia chinensis HOM05D007390 ORTHO05D009114 3.0e-24 118.6 191 36.6
Atru.chr2.3702 Acer truncatum HOM05D007390 ORTHO05D009114 5.1e-24 117.9 191 34.0
Aa31LG3G11740 Aethionema arabicum HOM05D007390 ORTHO05D009114 8.6e-24 117.1 188 35.1
QL08p003914 Quercus lobata HOM05D007390 ORTHO05D009114 1.1e-23 116.7 159 36.5
BcaB08g35944 Brassica carinata HOM05D007390 ORTHO05D009114 1.9e-23 115.9 189 33.9
BcaC04g20197 Brassica carinata HOM05D007390 ORTHO05D009114 1.9e-23 115.9 189 33.9
C09p46770 Brassica napus HOM05D007390 ORTHO05D009114 1.9e-23 115.9 189 33.9
BolC9t57528H Brassica oleracea HOM05D007390 ORTHO05D009114 3.3e-23 115.2 189 33.9
Sc16g0008150 Simmondsia chinensis HOM05D007390 ORTHO05D009114 3.3e-23 115.2 187 35.8
MSTRG.27466 Avicennia marina HOM05D007390 ORTHO05D009114 4.3e-23 114.8 187 35.8
Manes.15G058900 Manihot esculenta HOM05D007390 ORTHO05D009114 4.3e-23 114.8 159 37.1
vmacro09644 Vaccinium macrocarpon HOM05D007390 ORTHO05D009114 4.3e-23 114.8 183 37.7
AUR62036473 Chenopodium quinoa HOM05D007390 ORTHO05D009114 7.3e-23 114.0 193 34.7
CSS0024662 Camellia sinensis var. sinensis HOM05D007390 ORTHO05D009114 9.5e-23 113.6 159 40.9
CSS0045615 Camellia sinensis var. sinensis HOM05D007390 ORTHO05D009114 9.5e-23 113.6 159 40.9
Sp6g17720 Schrenkiella parvula HOM05D007390 ORTHO05D009114 9.5e-23 113.6 191 32.5
Duzib213G0999 Durio zibethinus HOM05D007390 ORTHO05D009114 1.2e-22 113.2 191 31.9
A10p13050 Brassica napus HOM05D007390 ORTHO05D009114 1.6e-22 112.8 183 34.4
BraA10t43400Z Brassica rapa HOM05D007390 ORTHO05D009114 3.6e-22 111.7 183 33.9
AT5G55840 Arabidopsis thaliana HOM05D007390 ORTHO05D009114 4.7e-22 111.3 183 35.0
EL10Ac4g07549 Beta vulgaris HOM05D007390 ORTHO05D009114 6.2e-22 110.9 193 35.8
Migut.F01991 Erythranthe guttata HOM05D007390 ORTHO05D009114 6.2e-22 110.9 158 39.9
Lj8P179T40 Lonicera japonica HOM05D007390 ORTHO05D009114 1.1e-21 110.2 187 34.2
Nitab4.5_0000163g0140 Nicotiana tabacum HOM05D007390 ORTHO05D009114 1.1e-21 110.2 161 36.6
FAN11G1706 Fragaria x ananassa HOM05D007390 ORTHO05D009114 1.8e-21 109.4 209 33.0
Aqoxy4G00642 Aquilegia oxysepala HOM05D007390 ORTHO05D009114 2.4e-21 109.0 151 39.1
Ah.03g135270 Amaranthus hybridus HOM05D007390 ORTHO05D009114 3.1e-21 108.6 195 35.4
AUR62017120 Chenopodium quinoa HOM05D007390 ORTHO05D009114 8.9e-21 107.1 193 34.2
SGA_v2.0_scaffold13G06360 Striga asiatica HOM05D007390 ORTHO05D009114 1.5e-20 106.3 158 38.6
CARHR269210 Cardamine hirsuta HOM05D007390 ORTHO05D009114 2.6e-20 105.5 166 36.7
MD03G1028500 Malus domestica HOM05D007390 ORTHO05D009114 4.4e-20 104.8 159 37.7
Cc05_g15030 Coffea canephora HOM05D007390 ORTHO05D009114 5.8e-20 104.4 157 37.6
MBI18_g16977_MAGBIO Magnolia biondii HOM05D007390 ORTHO05D009114 5.8e-20 104.4 140 40.0
TWI39G0225 Tripterygium wilfordii HOM05D007390 ORTHO05D009114 5.8e-20 104.4 157 38.2
Nitab4.5_0000756g0010 Nicotiana tabacum HOM05D007390 ORTHO05D009114 9.9e-20 103.6 160 35.6
TAR626G0036 Trochodendron aralioides HOM05D007390 ORTHO05D009114 1.3e-19 103.2 141 38.3
ClCG09G021340 Citrullus lanatus HOM05D007390 ORTHO05D009114 1.7e-19 102.8 188 33.0
Sopen12g007640 Solanum pennellii HOM05D007390 ORTHO05D009114 1.7e-19 102.8 156 35.3
Prupe.6G024500 Prunus persica HOM05D007390 ORTHO05D009114 3.8e-19 101.7 159 36.5
GSVIVG01012774001 Vitis vinifera HOM05D007390 ORTHO05D009114 3.8e-19 101.7 156 36.5
CAN.G354.45 Capsicum annuum HOM05D007390 ORTHO05D009114 4.9e-19 101.3 196 33.2
SalBow4G3102 Salvia bowleyana HOM05D007390 ORTHO05D009114 4.9e-19 101.3 156 39.1
FvH4_3g42930 Fragaria vesca HOM05D007390 ORTHO05D009114 6.4e-19 100.9 158 36.1
CsaV3_3G042310 Cucumis sativus L. HOM05D007390 ORTHO05D009114 8.4e-19 100.5 183 32.2
FAN11G2668 Fragaria x ananassa HOM05D007390 ORTHO05D009114 8.4e-19 100.5 158 35.4
BcaB08g35953 Brassica carinata HOM05D007390 ORTHO05D009114 1.1e-18 100.1 181 33.7
Haze_09837 Corylus avellana HOM05D007390 ORTHO05D009114 1.1e-18 100.1 151 34.4
FAN21G2513 Fragaria x ananassa HOM05D007390 ORTHO05D009114 1.4e-18 99.8 158 35.4
RcHm_v2.0_Chr5g0076971 Rosa chinensis HOM05D007390 ORTHO05D009114 1.9e-18 99.4 157 36.3
Potri.001G368700 Populus trichocarpa HOM05D007390 ORTHO05D009114 2.4e-18 99.0 153 33.3
Hund07420 Selenicereus undatus HOM05D007390 ORTHO05D009114 9.2e-18 97.1 158 34.8
Carub.0008s1619 Capsella rubella HOM05D007390 ORTHO05D009114 2.1e-17 95.9 159 35.2
CiPaw.11G204600 Carya illinoinensis HOM05D007390 ORTHO05D009114 2.7e-17 95.5 142 36.6
Cpa.g.c43812 Carica papaya HOM05D007390 ORTHO05D009114 7.8e-17 94.0 139 37.4
Phvul.009G209400 Phaseolus vulgaris HOM05D007390 ORTHO05D009114 7.8e-17 94.0 158 32.3
Sed0024715 Sechium edule HOM05D007390 ORTHO05D009114 1.0e-16 93.6 191 30.4
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 1.7e-16 92.8 159 33.3
Thecc.07G011700 Theobroma cacao HOM05D007390 ORTHO05D009114 1.7e-16 92.8 156 34.0
Glyma.15G202500 Glycine max HOM05D007390 ORTHO05D009114 3.9e-16 91.7 158 32.9
THA.LOC104811670 Tarenaya hassleriana HOM05D007390 ORTHO05D009114 6.6e-16 90.9 158 32.9
Lj6g0008328 Lotus japonicus HOM05D007390 ORTHO05D009114 1.9e-15 89.4 159 32.1
PGR031G0714 Punica granatum HOM05D007390 ORTHO05D009114 1.9e-15 89.4 156 33.3
Lalb_Chr15g0083781 Lupinus albus HOM05D007390 ORTHO05D009114 2.5e-15 89.0 159 31.4
TPR.G1694 Trifolium pratense HOM05D007390 ORTHO05D009114 4.3e-15 88.2 159 32.7
Ciclev10007298m.g Citrus clementina HOM05D007390 ORTHO05D009114 5.6e-15 87.8 142 33.8
arahy.Tifrunner.gnm1.ann1.885AEG Arachis hypogaea HOM05D007390 ORTHO05D009114 9.6e-15 87.0 159 32.1
PGSC0003DMG400029810 Solanum tuberosum HOM05D007390 ORTHO05D009114 9.6e-15 87.0 146 34.2
Psat1g149640 Pisum sativum HOM05D007390 ORTHO05D009114 2.1e-14 85.9 157 32.5
Dinv40864 Davidia involucrata HOM05D007390 ORTHO05D009114 3.1e-13 82.0 191 29.8
Psat6g031600 Pisum sativum HOM05D007390 ORTHO05D009114 1.5e-12 79.7 150 32.0
Ca_02001_v3 Cicer arietinum L. HOM05D007390 ORTHO05D009114 1.3e-11 76.6 152 31.6
Migut.D02115 Erythranthe guttata HOM05D007212 ORTHO05D009094 6.4e-11 74.3 219 25.6
ATR0751G228 Amborella trichopoda HOM05D007390 ORTHO05D009114 1.4e-10 73.2 181 27.1
Migut.G01143 Erythranthe guttata HOM05D007212 ORTHO05D009094 2.4e-10 72.4 218 25.2
Potri.001G236800 Populus trichocarpa HOM05D007212 ORTHO05D009094 5.4e-10 71.2 228 23.2
Gorai.002G101000 Gossypium raimondii HOM05D007390 ORTHO05D009114 7.1e-10 70.9 133 33.1
AUR62000398 Chenopodium quinoa HOM05D006888 ORTHO05D008371 9.3e-10 70.5 159 30.2
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 1.6e-09 69.7 182 28.6
Gohir.A01G092200 Gossypium hirsutum HOM05D007390 ORTHO05D009114 2.7e-09 68.9 133 33.1
ATR0691G117 Amborella trichopoda HOM05D007390 ORTHO05D009114 3.5e-09 68.6 220 25.5
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 4.6e-09 68.2 170 29.4
Oeu041026.1 Olea europaea HOM05D007212 ORTHO05D009094 6.0e-09 67.8 214 24.8
Migut.G01107 Erythranthe guttata HOM05D007212 ORTHO05D009094 7.8e-09 67.4 163 28.2
Lj1g0022770 Lotus japonicus HOM05D007390 ORTHO05D009114 7.8e-09 67.4 159 30.2
SHI18058 Sapria himalayana HOM05D006888 ORTHO05D008371 1.3e-08 66.6 191 30.4
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 1.7e-08 66.2 191 24.6
CiPaw.01G118600 Carya illinoinensis HOM05D007291 ORTHO05D009038 2.3e-08 65.9 188 23.9
Sp1g17190 Schrenkiella parvula HOM05D007639 ORTHO05D009509 3.0e-08 65.5 170 30.0
AUR62006754 Chenopodium quinoa HOM05D006888 ORTHO05D008371 3.9e-08 65.1 151 29.1
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 3.9e-08 65.1 179 29.6
arahy.Tifrunner.gnm1.ann1.HW3SC4 Arachis hypogaea HOM05D007291 ORTHO05D009038 8.7e-08 63.9 206 25.2
Hma1.2p1_0524F.1_g172380 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 1.5e-07 63.2 151 27.8
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 1.9e-07 62.8 213 26.3
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 1.9e-07 62.8 212 21.2
Thhalv10006776m.g Eutrema salsugineum HOM05D007639 ORTHO05D009509 1.9e-07 62.8 184 28.8
FAN16G0386 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.9e-07 62.8 121 29.8
Hma1.2p1_1840F.1_g304950 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 2.5e-07 62.4 151 27.2
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 3.3e-07 62.0 216 26.9
Prupe.6G082100 Prunus persica HOM05D007212 ORTHO05D009094 3.3e-07 62.0 118 29.7
Prupe.7G165800 Prunus persica HOM05D006888 ORTHO05D008371 3.3e-07 62.0 104 35.6
Duzib268G1497 Durio zibethinus HOM05D007291 ORTHO05D009038 4.3e-07 61.6 167 28.7
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 4.3e-07 61.6 119 28.6
GSVIVG01025017001 Vitis vinifera HOM05D007212 ORTHO05D009094 4.3e-07 61.6 120 28.3
Ah.06g195940 Amaranthus hybridus HOM05D006888 ORTHO05D008371 5.6e-07 61.2 143 31.5
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 5.6e-07 61.2 179 26.8
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 5.6e-07 61.2 142 25.4
Psat5g195760 Pisum sativum HOM05D006888 ORTHO05D008371 5.6e-07 61.2 136 31.6
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 7.3e-07 60.8 148 23.6
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 7.3e-07 60.8 148 25.7
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 9.6e-07 60.5 179 27.4
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 9.6e-07 60.5 179 27.4
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 1.3e-06 60.1 215 26.5
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 1.3e-06 60.1 179 26.8
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 1.6e-06 59.7 179 26.8
FvH4_3g35360 Fragaria vesca HOM05D007212 ORTHO05D009094 1.6e-06 59.7 121 28.9
FAN11G2747 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.6e-06 59.7 121 28.9
FAN21G3687 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.6e-06 59.7 121 28.9
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 2.1e-06 59.3 179 26.8
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 2.8e-06 58.9 113 34.5
PSO339G3988 Papaver somniferum HOM05D007212 ORTHO05D009094 3.6e-06 58.5 218 23.4
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 3.6e-06 58.5 148 25.7
CsaV3_2G007050 Cucumis sativus L. HOM05D006888 ORTHO05D008371 4.8e-06 58.2 148 29.7
Potri.001G276500 Populus trichocarpa HOM05D007455 ORTHO05D009431 4.8e-06 58.2 163 23.9
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 6.2e-06 57.8 139 26.6
Psat5g196040 Pisum sativum HOM05D006888 ORTHO05D008371 6.2e-06 57.8 117 31.6
Rhsim08G0018600 Rhododendron simsii HOM05D001542 ORTHO05D001416 6.2e-06 57.8 189 24.3
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 6.2e-06 57.8 132 31.8
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 8.1e-06 57.4 215 26.0
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 8.1e-06 57.4 155 27.1
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 8.1e-06 57.4 155 27.1
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 8.1e-06 57.4 148 25.0


User provided reference genes

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