Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb048670 Zea mays HOM05D000049 ORTHO05D008785 1.9e-57 225.7 119 100.0
Aqoxy5G01153 Aquilegia oxysepala HOM05D000049 ORTHO05D008785 3.1e-20 102.1 90 57.8
Psat6g219680 Pisum sativum HOM05D000049 ORTHO05D008785 4.1e-20 101.7 78 64.1
ECA240G2980 Erigeron canadensis HOM05D000049 ORTHO05D000027 5.3e-20 101.3 113 49.6
HPP92_004768 Vanilla planifolia HOM05D000049 ORTHO05D008785 5.3e-20 101.3 116 50.0
Cc02_g19180 Coffea canephora HOM05D000049 ORTHO05D008785 9.0e-20 100.5 85 57.6
QL11p033983 Quercus lobata HOM05D000049 ORTHO05D008785 9.0e-20 100.5 113 50.4
CiPaw.05G010600 Carya illinoinensis HOM05D000049 ORTHO05D008785 2.0e-19 99.4 77 62.3
Potri.009G096800 Populus trichocarpa HOM05D000049 ORTHO05D008785 2.0e-19 99.4 87 56.3
SGA_v2.0_scaffold393G50708 Striga asiatica HOM05D000049 ORTHO05D008785 2.0e-19 99.4 87 55.2
DCAR_030806 Daucus carota HOM05D000049 ORTHO05D008785 2.6e-19 99.0 76 60.5
Manes.02G137400 Manihot esculenta HOM05D000049 ORTHO05D008785 2.6e-19 99.0 79 62.0
Sc08g0001450 Simmondsia chinensis HOM05D000049 ORTHO05D008785 2.6e-19 99.0 82 59.8
THA.LOC104819560 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 2.6e-19 99.0 77 59.7
Carub.0007s0619 Capsella rubella HOM05D000049 ORTHO05D008785 3.4e-19 98.6 107 50.5
HanXRQChr03g0070281 Helianthus annuus HOM05D000049 ORTHO05D008785 3.4e-19 98.6 80 61.2
Sabra16G0189300 Salix brachista HOM05D000049 ORTHO05D008785 3.4e-19 98.6 85 56.5
SEGI_21574 Sequoiadendron giganteum HOM05D000049 ORTHO05D008785 3.4e-19 98.6 77 59.7
Solyc01g107660.3 Solanum lycopersicum HOM05D000049 ORTHO05D008785 3.4e-19 98.6 82 58.5
THA.LOC104807247 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 3.4e-19 98.6 82 59.8
arahy.Tifrunner.gnm1.ann1.MU25MQ Arachis hypogaea HOM05D000049 ORTHO05D008785 4.5e-19 98.2 77 59.7
A01p04250 Brassica napus HOM05D000049 ORTHO05D008785 5.9e-19 97.8 83 57.8
BraA01t00414Z Brassica rapa HOM05D000049 ORTHO05D008785 5.9e-19 97.8 83 57.8
EL10Ac9g22295 Beta vulgaris HOM05D000049 ORTHO05D008785 7.7e-19 97.4 94 54.3
Migut.B00381 Erythranthe guttata HOM05D000049 ORTHO05D008785 7.7e-19 97.4 75 64.0
Atru.chr5.2581 Acer truncatum HOM05D000049 ORTHO05D008785 1.0e-18 97.1 87 56.3
Eucgr.H03224 Eucalyptus grandis HOM05D000049 ORTHO05D008785 1.0e-18 97.1 87 55.2
FvH4_2g05321 Fragaria vesca HOM05D000049 ORTHO05D008785 1.0e-18 97.1 87 58.6
FAN20G0640 Fragaria x ananassa HOM05D000049 ORTHO05D008785 1.0e-18 97.1 87 58.6
TPR.G13867 Trifolium pratense HOM05D000049 ORTHO05D008785 1.0e-18 97.1 97 53.6
Actinidia27967 Actinidia chinensis HOM05D000049 ORTHO05D008785 1.3e-18 96.7 87 55.2
BcaNung03801 Brassica carinata HOM05D000049 ORTHO05D008785 1.3e-18 96.7 107 50.5
C01p04640 Brassica napus HOM05D000049 ORTHO05D008785 1.3e-18 96.7 107 50.5
BolC1t00447H Brassica oleracea HOM05D000049 ORTHO05D008785 1.3e-18 96.7 107 50.5
CiPaw.06G170000 Carya illinoinensis HOM05D000049 ORTHO05D008785 1.3e-18 96.7 113 48.7
Sp7g31960 Schrenkiella parvula HOM05D000049 ORTHO05D008785 1.3e-18 96.7 107 49.5
PGSC0003DMG400025866 Solanum tuberosum HOM05D000049 ORTHO05D008785 1.3e-18 96.7 82 57.3
AT4G34190 Arabidopsis thaliana HOM05D000049 ORTHO05D008785 1.7e-18 96.3 107 48.6
CAN.G1231.12 Capsicum annuum HOM05D000049 ORTHO05D008785 1.7e-18 96.3 83 54.2
Cpa.g.sc106.84 Carica papaya HOM05D000049 ORTHO05D008785 1.7e-18 96.3 94 53.2
Haze_10161 Corylus avellana HOM05D000049 ORTHO05D008785 1.7e-18 96.3 82 59.8
Oeu018599.1 Olea europaea HOM05D000049 ORTHO05D008785 2.2e-18 95.9 78 60.3
GSVIVG01003167001 Vitis vinifera HOM05D000049 ORTHO05D008785 2.2e-18 95.9 82 58.5
Ah.01g018130 Amaranthus hybridus HOM05D000049 ORTHO05D008785 2.9e-18 95.5 85 57.6
AL7G17120 Arabidopsis lyrata HOM05D000049 ORTHO05D008785 2.9e-18 95.5 107 48.6
Ciclev10029534m.g Citrus clementina HOM05D000049 ORTHO05D008785 2.9e-18 95.5 91 52.7
SalBow3G3686 Salvia bowleyana HOM05D000049 ORTHO05D008785 3.8e-18 95.1 84 60.7
Aa31LG2G16660 Aethionema arabicum HOM05D000049 ORTHO05D008785 6.5e-18 94.4 113 46.0
Thhalv10026482m.g Eutrema salsugineum HOM05D000049 ORTHO05D008785 6.5e-18 94.4 104 48.1
Duzib248G1051 Durio zibethinus HOM05D000049 ORTHO05D008785 8.5e-18 94.0 78 59.0
Potri.001G301100 Populus trichocarpa HOM05D000049 ORTHO05D008785 8.5e-18 94.0 87 52.9
CDE02G2484 Ceratophyllum demersum HOM05D000049 ORTHO05D008785 1.1e-17 93.6 89 53.9
Glyma.10G263000 Glycine max HOM05D000049 ORTHO05D008785 1.1e-17 93.6 78 59.0
Prupe.8G134100 Prunus persica HOM05D000049 ORTHO05D008785 1.1e-17 93.6 124 50.8
Oeu010393.1 Olea europaea HOM05D000049 ORTHO05D008785 1.4e-17 93.2 78 57.7
AUR62039109 Chenopodium quinoa HOM05D000049 ORTHO05D008785 1.9e-17 92.8 78 60.3
Glyma.20G127500 Glycine max HOM05D000049 ORTHO05D008785 1.9e-17 92.8 87 54.0
Hma1.2p1_0796F.1_g219130 Hydrangea macrophylla HOM05D000049 ORTHO05D008785 1.9e-17 92.8 87 55.2
Lalb_Chr02g0145351 Lupinus albus HOM05D000049 ORTHO05D008785 1.9e-17 92.8 78 57.7
unitig_22.g6845 Utricularia gibba HOM05D000049 ORTHO05D008785 1.9e-17 92.8 79 58.2
Nn1g04714 Nelumbo nucifera HOM05D000049 ORTHO05D008785 2.5e-17 92.4 75 60.0
Phvul.007G038900 Phaseolus vulgaris HOM05D000049 ORTHO05D008785 2.5e-17 92.4 78 57.7
Thecc.02G106900 Theobroma cacao HOM05D000049 ORTHO05D008785 2.5e-17 92.4 78 57.7
TWI31G0015 Tripterygium wilfordii HOM05D000049 ORTHO05D008785 2.5e-17 92.4 97 51.5
Cfa004569 Carpinus fangiana HOM05D000049 ORTHO05D008785 3.2e-17 92.0 78 60.3
AUR62010281 Chenopodium quinoa HOM05D000049 ORTHO05D008785 3.2e-17 92.0 77 59.7
Duzib132G0396 Durio zibethinus HOM05D000049 ORTHO05D008785 3.2e-17 92.0 76 57.9
Sed0018040 Sechium edule HOM05D000049 ORTHO05D008785 3.2e-17 92.0 90 50.0
Atru.chr11.1081 Acer truncatum HOM05D000049 ORTHO05D008785 4.2e-17 91.7 86 53.5
MD05G1088100 Malus domestica HOM05D000049 ORTHO05D008785 4.2e-17 91.7 75 62.7
RcHm_v2.0_Chr6g0255531 Rosa chinensis HOM05D000049 ORTHO05D008785 4.2e-17 91.7 82 61.0
CARHR242610 Cardamine hirsuta HOM05D000049 ORTHO05D008785 5.5e-17 91.3 80 55.0
VMungo0720G1000 Vigna mungo HOM05D000049 ORTHO05D008785 5.5e-17 91.3 78 57.7
Glyma.20G129600 Glycine max HOM05D000049 ORTHO05D008785 7.2e-17 90.9 105 48.6
Lj5g0006015 Lotus japonicus HOM05D000049 ORTHO05D008785 7.2e-17 90.9 82 54.9
Migut.N01171 Erythranthe guttata HOM05D000049 ORTHO05D008785 9.4e-17 90.5 79 59.5
Nitab4.5_0002815g0100 Nicotiana tabacum HOM05D000049 ORTHO05D008785 9.4e-17 90.5 82 53.7
TAR381G1170 Trochodendron aralioides HOM05D000049 ORTHO05D008785 9.4e-17 90.5 85 51.8
arahy.Tifrunner.gnm1.ann1.KJA62A Arachis hypogaea HOM05D000049 ORTHO05D008785 1.2e-16 90.1 114 44.7
Nitab4.5_0005392g0020 Nicotiana tabacum HOM05D000049 ORTHO05D008785 1.2e-16 90.1 82 53.7
PSO210G6109 Papaver somniferum HOM05D000049 ORTHO05D008785 1.2e-16 90.1 91 53.8
Hund06332 Selenicereus undatus HOM05D000049 ORTHO05D008785 2.1e-16 89.4 85 52.9
MSTRG.5347 Avicennia marina HOM05D000049 ORTHO05D008785 2.7e-16 89.0 75 60.0
CSS0023695 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 2.7e-16 89.0 78 59.0
Gohir.A03G186700 Gossypium hirsutum HOM05D000049 ORTHO05D008785 3.6e-16 88.6 77 58.4
Gohir.D02G207500 Gossypium hirsutum HOM05D000049 ORTHO05D008785 4.6e-16 88.2 77 57.1
CANSAT25G0973 Cannabis sativa HOM05D000049 ORTHO05D008785 7.9e-16 87.4 85 52.9
ClCG02G006290 Citrullus lanatus HOM05D000049 ORTHO05D008785 7.9e-16 87.4 96 50.0
CsaV3_7G008250 Cucumis sativus L. HOM05D000049 ORTHO05D008785 1.4e-15 86.7 93 50.5
Pp3c1_21810 Physcomitrium patens HOM05D000049 ORTHO05D008785 1.4e-15 86.7 116 42.2
Gorai.005G235400 Gossypium raimondii HOM05D000049 ORTHO05D008785 2.3e-15 85.9 77 55.8
CANSAT25G0620 Cannabis sativa HOM05D000049 ORTHO05D008785 3.0e-15 85.5 83 53.0
Peaxi162Scf00016g02238 Petunia axillaris HOM05D000049 ORTHO05D008785 3.0e-15 85.5 82 53.7
Dinv42184 Davidia involucrata HOM05D000049 ORTHO05D008785 3.9e-15 85.1 76 56.6
Medtr1g107490 Medicago truncatula HOM05D000049 ORTHO05D008785 8.8e-15 84.0 64 60.9
PGR042G1228 Punica granatum HOM05D000049 ORTHO05D008785 1.1e-14 83.6 113 46.0
AagrBONN_evm.TU.Sc2ySwM_117.2783 Anthoceros agrestis HOM05D000049 ORTHO05D008785 2.5e-14 82.4 82 48.8
PSO170G1282 Papaver somniferum HOM05D000049 ORTHO05D008785 3.3e-14 82.0 96 50.0
SMO340G0196 Selaginella moellendorffii HOM05D000049 ORTHO05D008785 3.3e-14 82.0 86 52.3
FAN15G1433 Fragaria x ananassa HOM05D000049 ORTHO05D008785 1.7e-13 79.7 77 54.5
Hund00143 Selenicereus undatus HOM05D000049 ORTHO05D008785 1.7e-13 79.7 70 57.1
FAN24G0707 Fragaria x ananassa HOM05D000049 ORTHO05D008785 2.2e-13 79.3 77 53.2
Os11g0621400 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 3.7e-13 78.6 100 47.0
MELO3C018482.2 Cucumis melo HOM05D000049 ORTHO05D000027 2.4e-12 75.9 67 56.7
Os10g0395200 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 5.3e-12 74.7 53 73.6
CSS0021501 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 2.6e-11 72.4 62 56.5
CSS0024818 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 2.6e-11 72.4 62 56.5
Mapoly0006s0145 Marchantia polymorpha HOM05D000049 ORTHO05D008785 5.9e-11 71.2 95 44.2
ATR0691G295 Amborella trichopoda HOM05D000049 ORTHO05D008785 2.5e-09 65.9 55 58.2
TAR376G0829 Trochodendron aralioides HOM05D000049 ORTHO05D008785 1.4e-07 60.1 51 52.9
Sabra09G0074400 Salix brachista HOM05D000049 ORTHO05D008785 1.8e-07 59.7 84 41.7
vmacro19520 Vaccinium macrocarpon HOM05D000049 ORTHO05D008785 3.0e-07 58.9 64 46.9
Dinv15757 Davidia involucrata HOM05D000049 ORTHO05D008785 9.7e-06 53.9 72 41.7


User provided reference genes

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