Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 0.0e+00 1164.8 586 100.0
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 3.5e-250 868.2 581 75.6
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 8.0e-170 601.3 580 52.9
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.4e-169 600.5 577 54.4
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.8e-169 600.1 620 50.0
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 5.2e-169 598.6 573 52.9
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 8.9e-169 597.8 619 51.5
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.2e-168 597.4 630 50.5
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 5.8e-168 595.1 626 51.3
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 1.7e-167 593.6 613 51.1
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 4.9e-167 592.0 598 52.0
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 2.0e-165 586.6 610 51.1
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 7.8e-165 584.7 587 50.9
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 1.0e-164 584.3 586 51.9
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 3.9e-164 582.4 601 52.7
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 3.9e-164 582.4 599 50.8
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 6.6e-164 581.6 600 51.2
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 2.5e-163 579.7 597 49.9
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 9.5e-163 577.8 593 51.1
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 9.5e-163 577.8 592 50.8
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.2e-162 577.4 592 49.8
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 2.8e-162 576.2 581 52.2
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 6.2e-162 575.1 593 50.8
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 6.2e-162 575.1 593 49.7
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 8.1e-162 574.7 587 50.1
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 3.1e-161 572.8 634 49.4
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 4.0e-161 572.4 587 51.4
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 5.2e-161 572.0 591 51.1
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 5.2e-161 572.0 607 49.6
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 8.9e-161 571.2 592 52.4
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 1.2e-160 570.9 594 50.0
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 2.6e-160 569.7 585 49.6
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 3.4e-160 569.3 581 50.6
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 3.4e-160 569.3 599 50.4
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 5.8e-160 568.5 598 50.0
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 2.2e-159 566.6 576 51.6
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 2.9e-159 566.2 608 48.7
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 1.1e-158 564.3 575 51.0
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 3.2e-158 562.8 594 50.5
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 7.1e-158 561.6 575 50.3
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 9.2e-158 561.2 601 50.4
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 1.2e-157 560.8 579 49.9
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 1.6e-157 560.5 580 50.2
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 1.6e-157 560.5 581 51.3
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 2.1e-157 560.1 607 49.1
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 3.5e-157 559.3 590 50.3
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 3.5e-157 559.3 599 49.7
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 7.8e-157 558.1 578 50.5
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 1.0e-156 557.8 618 48.5
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 1.0e-156 557.8 576 51.0
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 1.3e-156 557.4 575 50.3
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 3.0e-156 556.2 574 49.1
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 3.0e-156 556.2 579 50.3
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 5.1e-156 555.4 604 49.2
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 1.9e-155 553.5 593 49.6
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 1.9e-155 553.5 578 49.7
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 1.9e-155 553.5 574 50.3
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 4.3e-155 552.4 593 50.1
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 5.6e-155 552.0 640 46.4
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 5.6e-155 552.0 599 50.1
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.6e-154 550.4 640 46.4
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 1.6e-154 550.4 574 48.6
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.1e-154 550.1 640 46.4
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.7e-154 548.9 606 48.0
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.1e-153 547.7 419 62.5
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.4e-153 547.4 579 49.6
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 2.3e-153 546.6 575 49.0
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 6.8e-153 545.0 620 48.9
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 1.3e-151 540.8 592 49.5
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 1.9e-150 537.0 593 48.7
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 1.2e-149 534.3 570 47.9
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 6.6e-148 528.5 595 47.6
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 1.5e-147 527.3 582 47.3
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 3.1e-145 519.6 593 47.2
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 1.2e-144 517.7 615 46.2
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 1.5e-144 517.3 596 48.0
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 7.6e-144 515.0 581 46.8
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 7.6e-144 515.0 626 46.5
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 8.4e-143 511.5 389 61.7
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 5.4e-142 508.8 548 50.5
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 1.2e-141 507.7 572 48.1
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.1e-141 506.9 581 46.6
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 2.1e-138 496.9 570 46.5
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 2.1e-138 496.9 570 45.8
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 4.8e-138 495.7 593 45.7
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 2.0e-136 490.3 570 45.3
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 2.6e-136 490.0 572 47.2
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 1.9e-134 483.8 602 42.9
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 1.2e-133 481.1 570 45.8
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 4.3e-131 472.6 669 39.9
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 2.1e-130 470.3 570 45.3
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 3.7e-130 469.5 424 53.8
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 2.4e-126 456.8 416 53.8
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 4.6e-125 452.6 602 42.2
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 3.3e-123 446.4 579 42.5
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 2.1e-122 443.7 578 43.6
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 1.1e-121 441.4 579 42.3
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 1.0e-119 434.9 564 43.1
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 2.2e-119 433.7 731 37.3
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 5.7e-115 419.1 592 40.9
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 5.7e-115 419.1 592 40.9
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 5.7e-115 419.1 592 40.9
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 3.9e-100 369.8 458 46.5
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 1.3e-98 364.8 396 47.7
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 3.4e-96 356.7 253 61.7
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 5.9e-96 355.9 537 39.5
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 3.3e-91 340.1 442 43.7
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 6.5e-79 299.3 462 38.1
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 9.5e-70 268.9 458 38.2
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 3.1e-65 253.8 380 42.4
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 3.1e-65 253.8 341 41.3
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 8.0e-61 239.2 187 55.6
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 2.4e-57 227.6 355 41.4
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 7.3e-54 216.1 345 41.7
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.8e-45 187.6 136 60.3
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 3.4e-43 180.6 156 50.6
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 3.7e-42 177.2 130 59.2
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 6.4e-42 176.4 118 69.5
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 1.3e-39 168.7 137 55.5
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 6.6e-39 166.4 375 35.5
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 6.8e-36 156.4 136 50.7
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 3.2e-33 147.5 266 36.5
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 3.2e-33 147.5 389 30.1
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 2.1e-32 144.8 99 66.7
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.1e-28 132.5 113 56.6
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-28 131.7 157 42.7
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 1.1e-25 122.5 86 64.0
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 1.7e-23 115.2 431 24.8
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.1e-22 112.5 74 67.6
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 3.8e-18 97.4 318 27.0
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 3.2e-17 94.4 87 46.0
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 3.2e-17 94.4 87 46.0
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 4.9e-10 70.5 47 63.8
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 2.4e-09 68.2 80 47.5
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 2.3e-07 61.6 58 48.3


User provided reference genes

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