Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb047590 Zea mays HOM05D001000 ORTHO05D049734 7.3e-118 427.6 270 100.0
Os10g0431700 Oryza sativa ssp. japonica HOM05D001000 ORTHO05D049734 1.2e-30 137.9 255 48.2
Os03g0159400 Oryza sativa ssp. japonica HOM05D001000 ORTHO05D002976 3.7e-13 79.7 181 37.0
Zm00001eb004460 Zea mays HOM05D001000 ORTHO05D002976 4.9e-13 79.3 234 35.0
Thecc.01G276400 Theobroma cacao HOM05D001000 ORTHO05D002976 2.1e-11 73.9 184 33.2
MD03G1262500 Malus domestica HOM05D001000 ORTHO05D002976 1.7e-10 70.9 178 36.0
HanXRQChr01g0002931 Helianthus annuus HOM05D001000 ORTHO05D002976 2.3e-10 70.5 197 33.0
Atru.chr5.1466 Acer truncatum HOM05D001000 ORTHO05D002976 6.6e-10 68.9 169 33.7
Cfa006161 Carpinus fangiana HOM05D001000 ORTHO05D002976 6.6e-10 68.9 175 33.7
ECA248G0297 Erigeron canadensis HOM05D001000 ORTHO05D002976 6.6e-10 68.9 166 39.8
Ciclev10024021m.g Citrus clementina HOM05D001000 ORTHO05D002976 8.6e-10 68.6 174 33.3
Duzib138G0331 Durio zibethinus HOM05D001000 ORTHO05D002976 8.6e-10 68.6 195 36.4
Haze_04688 Corylus avellana HOM05D001000 ORTHO05D002976 1.1e-09 68.2 174 34.5
MSTRG.18244 Avicennia marina HOM05D001000 ORTHO05D002976 2.5e-09 67.0 170 32.4
COL.COLO4_09070 Corchorus olitorius HOM05D001000 ORTHO05D002976 2.5e-09 67.0 204 28.4
THA.LOC104817625 Tarenaya hassleriana HOM05D001000 ORTHO05D002976 2.5e-09 67.0 182 34.1
QL12p021288 Quercus lobata HOM05D001000 ORTHO05D002976 3.3e-09 66.6 171 34.5
MD11G1283200 Malus domestica HOM05D001000 ORTHO05D002976 4.3e-09 66.2 178 34.8
Gorai.007G137900 Gossypium raimondii HOM05D001000 ORTHO05D002976 5.6e-09 65.9 192 33.9
Gohir.D11G128900 Gossypium hirsutum HOM05D001000 ORTHO05D002976 7.3e-09 65.5 199 33.2
Gohir.A11G123700 Gossypium hirsutum HOM05D001000 ORTHO05D002976 9.6e-09 65.1 194 34.0
Lsat_1_v5_gn_5_184400 Lactuca sativa HOM05D001000 ORTHO05D002976 9.6e-09 65.1 160 36.2
Prupe.8G238800 Prunus persica HOM05D001000 ORTHO05D002976 1.2e-08 64.7 198 30.3
Manes.05G078000 Manihot esculenta HOM05D001000 ORTHO05D002976 1.6e-08 64.3 167 32.9
Phvul.007G173000 Phaseolus vulgaris HOM05D001000 ORTHO05D002976 1.6e-08 64.3 173 32.4
THA.LOC104823090 Tarenaya hassleriana HOM05D001000 ORTHO05D002976 1.6e-08 64.3 187 32.1
CiPaw.08G107000 Carya illinoinensis HOM05D001000 ORTHO05D002976 2.1e-08 63.9 184 32.1
Duzib133G0897 Durio zibethinus HOM05D001000 ORTHO05D002976 2.1e-08 63.9 184 31.0
THA.LOC104816106 Tarenaya hassleriana HOM05D001000 ORTHO05D002976 2.1e-08 63.9 179 32.4
Gohir.D08G074400 Gossypium hirsutum HOM05D001000 ORTHO05D002976 2.8e-08 63.5 171 32.2
Oeu034960.1 Olea europaea HOM05D001000 ORTHO05D002976 2.8e-08 63.5 161 32.3
PGR044G1478 Punica granatum HOM05D001000 ORTHO05D002976 2.8e-08 63.5 177 32.8
Glyma.03G155600 Glycine max HOM05D001000 ORTHO05D002976 4.7e-08 62.8 177 32.8
TAR636G0381 Trochodendron aralioides HOM05D001000 ORTHO05D002976 4.7e-08 62.8 178 30.3
MSTRG.4034 Avicennia marina HOM05D001000 ORTHO05D002976 6.2e-08 62.4 173 31.2
Ca_08612_v3 Cicer arietinum L. HOM05D001000 ORTHO05D002976 8.1e-08 62.0 171 31.0
Gorai.004G078700 Gossypium raimondii HOM05D001000 ORTHO05D002976 8.1e-08 62.0 171 32.2
Glyma.19G157700 Glycine max HOM05D001000 ORTHO05D002976 1.1e-07 61.6 227 30.0
arahy.Tifrunner.gnm1.ann1.1M8NR5 Arachis hypogaea HOM05D001000 ORTHO05D002976 1.4e-07 61.2 166 31.3
TWI12G0467 Tripterygium wilfordii HOM05D001000 ORTHO05D002976 1.4e-07 61.2 195 31.8
Cpa.g.sc487.2 Carica papaya HOM05D001000 ORTHO05D002976 1.8e-07 60.8 174 32.8
CiPaw.07G090000 Carya illinoinensis HOM05D001000 ORTHO05D002976 1.8e-07 60.8 171 33.3
Medtr7g095150 Medicago truncatula HOM05D001000 ORTHO05D002976 2.4e-07 60.5 169 32.5
Potri.005G211300 Populus trichocarpa HOM05D001000 ORTHO05D002976 2.4e-07 60.5 178 32.0
Sabra05G0161400 Salix brachista HOM05D001000 ORTHO05D002976 2.4e-07 60.5 184 31.5
DCAR_002726 Daucus carota HOM05D001000 ORTHO05D002976 3.1e-07 60.1 169 31.4
FAN22G0256 Fragaria x ananassa HOM05D001000 ORTHO05D002976 4.0e-07 59.7 175 29.1
Manes.01G206500 Manihot esculenta HOM05D001000 ORTHO05D002976 4.0e-07 59.7 169 31.4
DCAR_012488 Daucus carota HOM05D001000 ORTHO05D002976 5.2e-07 59.3 191 31.9
BcaB02g06863 Brassica carinata HOM05D001000 ORTHO05D002976 6.8e-07 58.9 191 31.4
MBI11_g31277_MAGBIO Magnolia biondii HOM05D001000 ORTHO05D002976 6.8e-07 58.9 68 48.5
PSO832G4130 Papaver somniferum HOM05D001000 ORTHO05D002976 6.8e-07 58.9 174 31.6
CANSAT78G2346 Cannabis sativa HOM05D001000 ORTHO05D002976 8.9e-07 58.5 182 29.1
Dinv34771 Davidia involucrata HOM05D001000 ORTHO05D002976 8.9e-07 58.5 166 34.3
Migut.D00315 Erythranthe guttata HOM05D001000 ORTHO05D002976 8.9e-07 58.5 86 40.7
Glyma.10G027500 Glycine max HOM05D001000 ORTHO05D002976 8.9e-07 58.5 176 38.1
Oeu020076.1 Olea europaea HOM05D001000 ORTHO05D002976 8.9e-07 58.5 189 29.1
Sc17g0001400 Simmondsia chinensis HOM05D001000 ORTHO05D002976 8.9e-07 58.5 60 51.7
MELO3C006531.2 Cucumis melo HOM05D001000 ORTHO05D002976 1.2e-06 58.2 182 33.5
PGR004G0529 Punica granatum HOM05D001000 ORTHO05D002976 1.2e-06 58.2 180 27.8
CDE04G1175 Ceratophyllum demersum HOM05D001000 ORTHO05D002976 1.5e-06 57.8 177 30.5
Cc03_g03850 Coffea canephora HOM05D001000 ORTHO05D002976 1.5e-06 57.8 172 30.8
Psat0s586g0080 Pisum sativum HOM05D001000 ORTHO05D002976 1.5e-06 57.8 174 31.6
RcHm_v2.0_Chr4g0416131 Rosa chinensis HOM05D001000 ORTHO05D002976 1.5e-06 57.8 105 37.1
A05p13400 Brassica napus HOM05D001000 ORTHO05D002976 2.0e-06 57.4 173 30.1
BraA05t20278Z Brassica rapa HOM05D001000 ORTHO05D002976 2.0e-06 57.4 173 30.1
Hma1.2p1_0667F.1_g199700 Hydrangea macrophylla HOM05D001000 ORTHO05D002976 2.0e-06 57.4 171 33.3
Nitab4.5_0004318g0090 Nicotiana tabacum HOM05D001000 ORTHO05D002976 2.0e-06 57.4 62 51.6
Sabra02G0041900 Salix brachista HOM05D001000 ORTHO05D002976 2.0e-06 57.4 182 28.0
SGA_v2.0_scaffold1G00493 Striga asiatica HOM05D001000 ORTHO05D002976 2.0e-06 57.4 187 31.6
CSS0047001 Camellia sinensis var. sinensis HOM05D001000 ORTHO05D002976 2.6e-06 57.0 165 27.9
DCAR_018427 Daucus carota HOM05D001000 ORTHO05D002976 2.6e-06 57.0 60 51.7
THA.LOC104813559 Tarenaya hassleriana HOM05D005698 ORTHO05D007022 2.6e-06 57.0 67 49.3
VMungo0720G2136 Vigna mungo HOM05D001000 ORTHO05D002976 2.6e-06 57.0 162 30.2
Aqoxy5G00464 Aquilegia oxysepala HOM05D001000 ORTHO05D002976 3.4e-06 56.6 60 51.7
A09p67450 Brassica napus HOM05D001000 ORTHO05D002976 3.4e-06 56.6 187 29.4
A10p04100 Brassica napus HOM05D001000 ORTHO05D002976 3.4e-06 56.6 191 29.8
BraA10t42681Z Brassica rapa HOM05D001000 ORTHO05D002976 3.4e-06 56.6 191 29.8
Lj1g0005440 Lotus japonicus HOM05D001000 ORTHO05D002976 3.4e-06 56.6 169 30.2
Medtr1g072110 Medicago truncatula HOM05D001000 ORTHO05D002976 3.4e-06 56.6 166 31.3
QL06p002196 Quercus lobata HOM05D001000 ORTHO05D002976 3.4e-06 56.6 163 31.3
TAR365G1168 Trochodendron aralioides HOM05D001000 ORTHO05D002976 3.4e-06 56.6 160 29.4
Aqoxy2G03395 Aquilegia oxysepala HOM05D001000 ORTHO05D002976 4.4e-06 56.2 60 53.3
C04p17520 Brassica napus HOM05D001000 ORTHO05D002976 4.4e-06 56.2 173 30.1
BolC4t23299H Brassica oleracea HOM05D001000 ORTHO05D002976 4.4e-06 56.2 173 30.1
COL.COLO4_21485 Corchorus olitorius HOM05D001000 ORTHO05D002976 4.4e-06 56.2 174 30.5
PSO210G3543 Papaver somniferum HOM05D001000 ORTHO05D002976 4.4e-06 56.2 174 31.0
Phvul.001G153000 Phaseolus vulgaris HOM05D001000 ORTHO05D002976 4.4e-06 56.2 163 33.1
SHI10920 Sapria himalayana HOM05D005698 ORTHO05D007022 4.4e-06 56.2 89 38.2
Sed0009461 Sechium edule HOM05D001000 ORTHO05D002976 4.4e-06 56.2 161 31.7
TAR633G2027 Trochodendron aralioides HOM05D001000 ORTHO05D002976 4.4e-06 56.2 172 32.0
BcaB02g10451 Brassica carinata HOM05D001000 ORTHO05D002976 5.8e-06 55.8 173 29.5
Carub.0002s2754 Capsella rubella HOM05D005698 ORTHO05D007022 5.8e-06 55.8 67 46.3
FAN07G0223 Fragaria x ananassa HOM05D001000 ORTHO05D002976 5.8e-06 55.8 175 30.3
Nn4g26331 Nelumbo nucifera HOM05D001000 ORTHO05D002976 5.8e-06 55.8 60 53.3
TWI18G0499 Tripterygium wilfordii HOM05D001000 ORTHO05D002976 5.8e-06 55.8 198 30.3
HPP92_023505 Vanilla planifolia HOM05D001000 ORTHO05D002976 5.8e-06 55.8 179 31.3
Actinidia36957 Actinidia chinensis HOM05D006838 ORTHO05D008915 7.6e-06 55.5 170 30.6
Aa31LG1G19220 Aethionema arabicum HOM05D001000 ORTHO05D002976 7.6e-06 55.5 194 30.4
Migut.G00342 Erythranthe guttata HOM05D001000 ORTHO05D002976 7.6e-06 55.5 60 50.0
FvH4_4g15660 Fragaria vesca HOM05D001000 ORTHO05D002976 7.6e-06 55.5 75 45.3
FAN12G3617 Fragaria x ananassa HOM05D001000 ORTHO05D002976 7.6e-06 55.5 75 45.3
Potri.002G051200 Populus trichocarpa HOM05D001000 ORTHO05D002976 7.6e-06 55.5 189 31.2
Sp4g14510 Schrenkiella parvula HOM05D001000 ORTHO05D002976 7.6e-06 55.5 174 30.5
Hma1.2p1_0745F.1_g212070 Hydrangea macrophylla HOM05D001000 ORTHO05D002976 9.9e-06 55.1 188 27.1
Nn1g02331 Nelumbo nucifera HOM05D001000 ORTHO05D002976 9.9e-06 55.1 63 49.2
Thecc.04G232700 Theobroma cacao HOM05D001000 ORTHO05D002976 9.9e-06 55.1 182 30.8


User provided reference genes

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