Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 5.6e-206 720.7 363 100.0
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 3.0e-167 592.0 364 84.3
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 6.0e-131 471.5 352 67.9
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 6.0e-131 471.5 351 67.5
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 1.9e-129 466.5 352 65.3
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 6.2e-128 461.5 335 67.5
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 5.2e-127 458.4 333 66.4
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 2.0e-126 456.4 303 72.9
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 4.4e-126 455.3 317 70.3
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 4.4e-126 455.3 326 67.2
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 5.8e-126 454.9 305 71.8
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 1.7e-125 453.4 361 62.0
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 1.7e-125 453.4 326 66.9
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 1.7e-125 453.4 339 66.7
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 2.2e-125 453.0 325 68.0
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 2.2e-125 453.0 349 65.6
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 2.2e-125 453.0 303 72.3
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 2.9e-125 452.6 300 71.7
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 8.3e-125 451.1 303 71.6
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 1.4e-124 450.3 303 71.9
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 2.4e-124 449.5 318 69.8
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 3.2e-124 449.1 303 71.6
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 3.2e-124 449.1 332 66.9
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 4.1e-124 448.7 370 62.2
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 5.4e-124 448.4 332 66.0
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 9.2e-124 447.6 305 71.1
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 1.6e-123 446.8 358 62.8
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 1.6e-123 446.8 333 66.1
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 2.1e-123 446.4 303 71.9
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 2.7e-123 446.0 317 67.2
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 4.6e-123 445.3 325 67.4
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 6.0e-123 444.9 368 61.4
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 6.0e-123 444.9 317 67.2
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 1.0e-122 444.1 323 66.3
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 3.9e-122 442.2 335 64.5
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 6.6e-122 441.4 299 70.2
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.1e-121 440.7 331 66.2
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 1.1e-121 440.7 364 61.5
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 1.5e-121 440.3 292 73.6
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 1.5e-121 440.3 302 70.9
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.9e-121 439.9 326 64.7
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 4.3e-121 438.7 302 68.9
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 2.1e-120 436.4 325 65.5
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 2.8e-120 436.0 299 68.6
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 2.8e-120 436.0 320 66.2
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.7e-120 435.3 305 70.8
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 4.7e-120 435.3 300 68.7
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 8.1e-120 434.5 352 62.5
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.4e-119 433.7 305 70.2
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 2.3e-119 433.0 299 68.6
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 3.1e-119 432.6 305 69.8
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 3.1e-119 432.6 334 64.1
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 4.0e-119 432.2 323 65.6
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 4.0e-119 432.2 327 64.2
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 5.2e-119 431.8 311 68.5
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 6.8e-119 431.4 372 59.7
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 6.8e-119 431.4 362 60.2
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 1.2e-118 430.6 303 69.0
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.5e-118 430.3 312 69.2
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 3.4e-118 429.1 361 62.6
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 5.8e-118 428.3 297 68.7
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 9.9e-118 427.6 333 62.5
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 2.2e-117 426.4 302 67.9
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 2.2e-117 426.4 301 69.1
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 3.7e-117 425.6 359 60.2
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 4.9e-117 425.2 297 67.7
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 6.4e-117 424.9 300 68.3
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 3.2e-116 422.5 318 64.5
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 7.1e-116 421.4 302 67.2
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.1e-115 419.9 341 61.9
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 3.5e-115 419.1 301 64.8
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.6e-115 418.7 327 61.5
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 4.6e-115 418.7 293 69.3
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 1.0e-114 417.5 298 67.4
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.9e-114 415.6 344 59.0
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 3.9e-114 415.6 306 66.7
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.1e-114 415.2 346 59.2
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.9e-113 413.3 300 67.3
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 2.5e-113 412.9 343 59.5
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.5e-113 412.9 325 61.5
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 5.6e-113 411.8 312 64.4
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 1.6e-112 410.2 298 63.8
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 4.0e-111 405.6 366 56.6
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 4.0e-111 405.6 366 56.6
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 2.6e-110 402.9 361 58.4
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.8e-110 401.7 360 56.9
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 1.3e-109 400.6 320 60.0
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 1.9e-108 396.7 301 63.8
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 2.4e-108 396.4 391 53.7
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 3.6e-104 382.5 303 63.7
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.4e-103 380.6 295 63.4
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.4e-103 380.6 295 63.4
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.2e-99 367.5 309 61.2
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.3e-98 364.0 254 70.9
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 1.3e-98 364.0 328 56.7
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 1.9e-97 360.1 271 62.0
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 7.3e-97 358.2 291 61.2
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 1.4e-95 354.0 280 60.4
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.1e-87 327.8 294 53.7
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 1.4e-87 327.4 293 55.3
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 2.4e-87 326.6 292 56.8
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 4.0e-87 325.9 294 54.4
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 9.0e-87 324.7 293 54.6
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 1.5e-86 323.9 294 54.1
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 4.5e-86 322.4 293 54.6
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 5.8e-86 322.0 294 54.1
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 1.7e-85 320.5 292 52.4
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.9e-85 318.9 294 54.1
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 1.1e-84 317.8 292 52.1
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.1e-84 317.8 298 53.0
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.9e-84 317.0 299 53.5
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.2e-84 315.8 294 54.8
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.2e-84 315.8 296 52.7
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 5.5e-84 315.5 293 53.9
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 1.2e-83 314.3 220 68.6
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.6e-83 313.9 294 53.4
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 7.9e-83 311.6 292 53.4
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.3e-82 310.1 294 52.7
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 6.7e-82 308.5 285 57.2
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.1e-81 307.8 299 50.2
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.1e-81 307.8 231 61.0
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 1.9e-81 307.0 291 51.2
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 7.4e-81 305.1 294 52.0
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.1e-80 303.5 293 52.2
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 4.8e-80 302.4 274 55.1
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 4.8e-80 302.4 307 49.5
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 6.2e-80 302.0 303 49.2
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 8.2e-80 301.6 295 51.9
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 1.4e-79 300.8 300 49.3
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 3.1e-79 299.7 294 50.0
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 3.1e-79 299.7 294 50.0
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 4.0e-79 299.3 300 49.0
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 5.3e-79 298.9 219 63.5
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.0e-78 297.0 292 50.3
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 5.8e-78 295.4 295 50.8
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 7.6e-78 295.0 295 51.2
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 6.5e-77 292.0 295 50.8
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-76 291.2 295 50.5
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 1.9e-76 290.4 300 46.7
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 1.6e-75 287.3 280 52.9
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 1.3e-74 284.3 300 47.7
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.5e-70 270.8 282 47.9
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-67 261.2 352 42.3
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 3.0e-66 256.5 295 48.1
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 2.0e-65 253.8 281 48.4
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 4.3e-65 252.7 274 48.5
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 3.8e-61 239.6 194 60.3
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 1.2e-59 234.6 283 45.6
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 1.0e-58 231.5 258 45.7
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 3.5e-54 216.5 256 46.5
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 2.2e-53 213.8 201 52.7
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 2.2e-53 213.8 201 52.7
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.0e-51 205.3 221 49.8
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.7e-48 197.6 389 35.5
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 4.5e-46 189.5 178 50.6
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 7.2e-44 182.2 189 52.9
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 4.2e-36 156.4 128 53.9
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 8.0e-35 152.1 150 53.3
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.0e-34 151.8 298 32.2
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 3.0e-34 150.2 128 52.3
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 3.0e-34 150.2 128 52.3
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 8.6e-29 132.1 151 49.7
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.5e-28 130.6 85 76.5
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 2.8e-27 127.1 111 50.5
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 8.3e-24 115.5 97 60.8
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 1.7e-21 107.8 295 29.8
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 6.8e-10 69.3 77 48.1


User provided reference genes

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