Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 4.7e-171 604.4 293 100.0
Zm00001eb359870 Zea mays HOM05D008312 ORTHO05D010433 1.8e-69 266.9 182 77.5
Zm00001eb225330 Zea mays HOM05D008312 ORTHO05D010433 3.8e-51 206.1 349 41.5
Zm00001eb076970 Zea mays HOM05D008312 ORTHO05D010433 1.4e-50 204.1 349 41.3
Zm00001eb219340 Zea mays HOM05D008312 ORTHO05D010433 6.0e-49 198.7 349 40.4
Zm00001eb376030 Zea mays HOM05D008312 ORTHO05D010433 2.2e-35 153.7 189 44.4
Zm00001eb315800 Zea mays HOM05D000777 ORTHO05D010433 9.3e-34 148.3 177 46.9
Zm00001eb379360 Zea mays HOM05D008312 ORTHO05D010433 9.3e-34 148.3 177 46.9
Zm00001eb239440 Zea mays HOM05D000777 ORTHO05D010433 1.2e-33 147.9 177 46.9
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 8.7e-32 141.7 95 68.4
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 4.3e-31 139.4 71 87.3
Zm00001eb123010 Zea mays HOM05D008312 ORTHO05D010433 9.6e-31 138.3 77 89.6
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 3.5e-25 119.8 63 77.8
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 1.0e-24 118.2 65 75.4
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 1.8e-24 117.5 59 81.4
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 3.9e-24 116.3 95 53.7
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 3.9e-24 116.3 95 53.7
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 5.1e-24 115.9 59 81.4
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 5.1e-24 115.9 103 49.5
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 8.7e-24 115.2 59 79.7
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 8.7e-24 115.2 103 52.4
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 1.1e-23 114.8 63 76.2
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 1.5e-23 114.4 59 78.0
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 1.9e-23 114.0 59 79.7
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 1.9e-23 114.0 63 74.6
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 1.9e-23 114.0 59 79.7
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 2.5e-23 113.6 74 66.2
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 2.5e-23 113.6 59 79.7
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 2.5e-23 113.6 59 76.3
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.5e-23 113.6 59 79.7
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 3.3e-23 113.2 91 54.9
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 3.3e-23 113.2 59 76.3
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 3.3e-23 113.2 59 76.3
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 3.3e-23 113.2 59 76.3
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 3.3e-23 113.2 58 77.6
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 4.3e-23 112.8 103 50.5
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 5.7e-23 112.5 59 78.0
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 5.7e-23 112.5 59 78.0
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 5.7e-23 112.5 59 78.0
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 5.7e-23 112.5 67 68.7
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 5.7e-23 112.5 91 53.8
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 7.4e-23 112.1 103 49.5
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 7.4e-23 112.1 59 79.7
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 7.4e-23 112.1 63 73.0
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 7.4e-23 112.1 59 78.0
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 9.7e-23 111.7 59 74.6
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 9.7e-23 111.7 91 53.8
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 9.7e-23 111.7 59 74.6
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 1.3e-22 111.3 91 52.7
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 1.3e-22 111.3 91 52.7
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 1.3e-22 111.3 69 65.2
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 1.6e-22 110.9 67 71.6
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 1.6e-22 110.9 59 79.7
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 2.2e-22 110.5 59 74.6
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 2.2e-22 110.5 59 78.0
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 2.2e-22 110.5 90 52.2
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 2.2e-22 110.5 59 78.0
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 2.8e-22 110.2 59 74.6
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 2.8e-22 110.2 59 76.3
Zm00001eb045590 Zea mays HOM05D008312 ORTHO05D010433 2.8e-22 110.2 177 41.2
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 3.7e-22 109.8 63 68.3
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 3.7e-22 109.8 59 74.6
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 3.7e-22 109.8 59 74.6
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 3.7e-22 109.8 59 74.6
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 3.7e-22 109.8 59 74.6
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 3.7e-22 109.8 59 74.6
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 3.7e-22 109.8 91 53.8
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 4.8e-22 109.4 59 74.6
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 4.8e-22 109.4 59 74.6
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 4.8e-22 109.4 59 72.9
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 4.8e-22 109.4 59 74.6
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 6.3e-22 109.0 59 72.9
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 6.3e-22 109.0 59 72.9
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 6.3e-22 109.0 59 72.9
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 6.3e-22 109.0 59 72.9
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 6.3e-22 109.0 59 72.9
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 6.3e-22 109.0 59 74.6
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 6.3e-22 109.0 59 74.6
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 6.3e-22 109.0 59 74.6
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 6.3e-22 109.0 91 53.8
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.2e-22 108.6 58 75.9
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 8.2e-22 108.6 59 74.6
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 8.2e-22 108.6 59 74.6
Zm00001eb043280 Zea mays HOM05D008312 ORTHO05D010433 8.2e-22 108.6 59 91.5
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.1e-21 108.2 59 72.9
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.1e-21 108.2 59 72.9
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.1e-21 108.2 59 72.9
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 1.1e-21 108.2 59 74.6
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 1.1e-21 108.2 59 74.6
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 1.1e-21 108.2 59 72.9
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 1.4e-21 107.8 59 72.9
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.4e-21 107.8 59 72.9
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 1.4e-21 107.8 59 72.9
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.8e-21 107.5 59 72.9
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.8e-21 107.5 59 74.6
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 2.4e-21 107.1 59 76.3
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.4e-21 107.1 59 71.2
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 3.1e-21 106.7 59 71.2
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 4.1e-21 106.3 59 74.6
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 4.1e-21 106.3 59 74.6
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 5.3e-21 105.9 58 72.4
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 6.9e-21 105.5 57 73.7
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 6.9e-21 105.5 66 72.7
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 9.0e-21 105.1 59 71.2
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 9.0e-21 105.1 59 69.5
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 1.5e-20 104.4 59 69.5
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 2.0e-20 104.0 69 68.1
Zm00001eb227270 Zea mays HOM05D000096 ORTHO05D000045 2.0e-20 104.0 100 52.0
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 2.6e-20 103.6 66 68.2
Zm00001eb346080 Zea mays HOM05D008312 ORTHO05D010433 3.4e-20 103.2 100 52.0
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 4.5e-20 102.8 57 73.7
Zm00001eb432680 Zea mays HOM05D008312 ORTHO05D010433 7.7e-20 102.1 151 42.4
Zm00001eb062610 Zea mays HOM05D008312 ORTHO05D010433 1.7e-19 100.9 151 41.7
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 2.2e-19 100.5 47 93.6
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 1.4e-18 97.8 70 57.1
Zm00001eb038940 Zea mays HOM05D008312 ORTHO05D010433 1.4e-18 97.8 148 41.9
Zm00001eb204930 Zea mays HOM05D008312 ORTHO05D010433 1.9e-18 97.4 110 48.2
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 3.2e-18 96.7 64 68.8
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 4.2e-18 96.3 78 62.8
Zm00001eb043670 Zea mays HOM05D008312 ORTHO05D010433 7.2e-18 95.5 109 45.0
Zm00001eb245100 Zea mays HOM05D008312 ORTHO05D010433 7.2e-18 95.5 123 43.9
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 9.4e-18 95.1 89 56.2
Zm00001eb113510 Zea mays HOM05D008312 ORTHO05D010433 2.1e-17 94.0 47 91.5
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 6.1e-17 92.4 63 52.4
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 7.9e-17 92.0 59 67.8
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 1.8e-16 90.9 75 50.7
Zm00001eb425000 Zea mays HOM05D008312 ORTHO05D010433 1.8e-16 90.9 160 35.6
Zm00001eb043290 Zea mays HOM05D008312 ORTHO05D010433 2.3e-16 90.5 47 89.4
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 3.0e-16 90.1 88 46.6
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 5.1e-16 89.4 86 50.0
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 6.7e-16 89.0 97 45.4
Os07g0418100 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 4.3e-15 86.3 114 44.7
Zm00001eb290230 Zea mays HOM05D008312 ORTHO05D010433 8.2e-14 82.0 77 50.6
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 2.0e-12 77.4 74 51.4
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 6.5e-11 72.4 51 62.7
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 6.5e-11 72.4 69 47.8
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 4.2e-10 69.7 42 69.0
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 4.2e-10 69.7 38 76.3
Zm00001eb043660 Zea mays HOM05D008312 ORTHO05D010433 7.2e-10 68.9 55 56.4
Zm00001eb387180 Zea mays HOM05D008312 ORTHO05D010433 7.2e-10 68.9 68 50.0
Zm00001eb104450 Zea mays HOM05D008312 ORTHO05D010433 2.1e-09 67.4 31 100.0
Zm00001eb123030 Zea mays HOM05D008312 ORTHO05D010433 2.1e-09 67.4 31 100.0
Zm00001eb193210 Zea mays HOM05D008312 ORTHO05D010433 2.1e-09 67.4 31 100.0
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 3.6e-09 66.6 44 65.9
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 1.4e-08 64.7 38 68.4
Zm00001eb377220 Zea mays HOM05D008312 ORTHO05D010433 1.8e-08 64.3 64 45.3
Zm00001eb317980 Zea mays HOM05D008312 ORTHO05D010433 2.3e-08 63.9 55 54.5
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 5.1e-08 62.8 51 47.1
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 4.4e-07 59.7 46 60.9
Zm00001eb255630 Zea mays HOM05D008312 ORTHO05D010433 9.7e-07 58.5 30 90.0
Zm00001eb261160 Zea mays HOM05D008312 ORTHO05D010433 1.7e-06 57.8 64 40.6
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 3.7e-06 56.6 44 61.4


User provided reference genes

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