Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb046070 Zea mays HOM05D002817 ORTHO05D003138 1.3e-120 436.4 218 100.0
Zm00001eb148930 Zea mays HOM05D003053 ORTHO05D003431 7.2e-15 85.1 47 91.5
Zm00001eb098200 Zea mays HOM05D018597 ORTHO05D446545 3.6e-14 82.8 47 91.5
Zm00001eb368330 Zea mays HOM05D003053 ORTHO05D003431 8.0e-14 81.6 47 89.4
Os01g0833100 Oryza sativa ssp. japonica HOM05D003053 ORTHO05D003431 4.0e-13 79.3 47 87.2
Zm00001eb064170 Zea mays HOM05D007121 ORTHO05D009116 1.3e-11 74.3 37 94.6
Zm00001eb247020 Zea mays HOM05D002817 ORTHO05D003138 1.8e-10 70.5 35 91.4
Zm00001eb383980 Zea mays HOM05D000251 ORTHO05D000414 1.7e-08 63.9 80 47.5
CDE04G1762 Ceratophyllum demersum HOM05D002817 ORTHO05D003138 2.9e-08 63.2 35 80.0
Zm00001eb426050 Zea mays HOM05D002817 ORTHO05D003138 2.9e-08 63.2 42 73.8
Zm00001eb277390 Zea mays HOM05D000251 ORTHO05D000414 3.8e-08 62.8 80 46.2
CSS0003653 Camellia sinensis var. sinensis HOM05D002817 ORTHO05D003138 5.0e-08 62.4 35 77.1
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 8.5e-08 61.6 53 56.6
Os04g0502900 Oryza sativa ssp. japonica HOM05D002817 ORTHO05D003138 1.1e-07 61.2 33 84.8
Hund04439 Selenicereus undatus HOM05D002817 ORTHO05D003138 1.1e-07 61.2 35 68.6
GSVIVG01012862001 Vitis vinifera HOM05D002817 ORTHO05D003138 1.5e-07 60.8 69 49.3
MELO3C016993.2 Cucumis melo HOM05D002817 ORTHO05D003138 1.9e-07 60.5 51 56.9
CsaV3_4G036940 Cucumis sativus L. HOM05D002817 ORTHO05D003138 1.9e-07 60.5 51 56.9
Psat4g034360 Pisum sativum HOM05D002817 ORTHO05D003138 1.9e-07 60.5 35 74.3
SGA_v2.0_scaffold20G09087 Striga asiatica HOM05D002817 ORTHO05D003138 1.9e-07 60.5 34 79.4
Zm00001eb078110 Zea mays HOM05D002817 ORTHO05D003138 1.9e-07 60.5 33 84.8
Migut.J01231 Erythranthe guttata HOM05D002817 ORTHO05D003138 2.5e-07 60.1 34 76.5
Hma1.2p1_0974F.1_g243060 Hydrangea macrophylla HOM05D002817 ORTHO05D003138 3.2e-07 59.7 35 74.3
CANSAT11G1075 Cannabis sativa HOM05D002817 ORTHO05D003138 4.2e-07 59.3 34 76.5
Thecc.09G138200 Theobroma cacao HOM05D002817 ORTHO05D003138 4.2e-07 59.3 35 74.3
CSS0034536 Camellia sinensis var. sinensis HOM05D002817 ORTHO05D003138 5.5e-07 58.9 35 77.1
Rhsim07G0160900 Rhododendron simsii HOM05D002817 ORTHO05D003138 5.5e-07 58.9 51 58.8
Sabra18G0098800 Salix brachista HOM05D002817 ORTHO05D003138 5.5e-07 58.9 36 69.4
Sabra18G0099300 Salix brachista HOM05D002817 ORTHO05D003138 5.5e-07 58.9 36 69.4
Sabra18G0100800 Salix brachista HOM05D002817 ORTHO05D003138 5.5e-07 58.9 36 69.4
Sabra18G0101300 Salix brachista HOM05D002817 ORTHO05D003138 5.5e-07 58.9 36 69.4
TWI34G0888 Tripterygium wilfordii HOM05D002817 ORTHO05D003138 5.5e-07 58.9 35 68.6
Migut.A00014 Erythranthe guttata HOM05D002817 ORTHO05D003138 7.2e-07 58.5 34 73.5
Lj4g0012706 Lotus japonicus HOM05D002817 ORTHO05D003138 7.2e-07 58.5 35 74.3
Nn8g39662 Nelumbo nucifera HOM05D002817 ORTHO05D003138 7.2e-07 58.5 35 74.3
Nitab4.5_0000478g0010 Nicotiana tabacum HOM05D002817 ORTHO05D003138 7.2e-07 58.5 38 65.8
Nitab4.5_0005543g0010 Nicotiana tabacum HOM05D002817 ORTHO05D003138 7.2e-07 58.5 51 54.9
Peaxi162Scf00341g00819 Petunia axillaris HOM05D002817 ORTHO05D003138 7.2e-07 58.5 35 68.6
Sc06g0000500 Simmondsia chinensis HOM05D002817 ORTHO05D003138 7.2e-07 58.5 35 71.4
TPR.G28515 Trifolium pratense HOM05D002817 ORTHO05D003138 7.2e-07 58.5 35 74.3
Haze_15995 Corylus avellana HOM05D000251 ORTHO05D000414 9.4e-07 58.2 107 34.6
Lalb_Chr07g0179391 Lupinus albus HOM05D002817 ORTHO05D003138 9.4e-07 58.2 35 71.4
QL02p090852 Quercus lobata HOM05D002817 ORTHO05D003138 9.4e-07 58.2 35 71.4
Actinidia14097 Actinidia chinensis HOM05D002817 ORTHO05D003138 1.2e-06 57.8 35 74.3
Cfa003553 Carpinus fangiana HOM05D000251 ORTHO05D000414 1.2e-06 57.8 107 34.6
Ca_21634_v3 Cicer arietinum L. HOM05D002817 ORTHO05D003138 1.2e-06 57.8 35 68.6
ClCG05G016640 Citrullus lanatus HOM05D002817 ORTHO05D003138 1.2e-06 57.8 50 54.0
Nitab4.5_0000206g0160 Nicotiana tabacum HOM05D002817 ORTHO05D003138 1.2e-06 57.8 35 68.6
VMungo1215G2260 Vigna mungo HOM05D002817 ORTHO05D003138 1.2e-06 57.8 35 77.1
Atru.chr7.297 Acer truncatum HOM05D002817 ORTHO05D003138 1.6e-06 57.4 36 66.7
Glyma.13G163900 Glycine max HOM05D002817 ORTHO05D003138 1.6e-06 57.4 35 74.3
Nn2g12201 Nelumbo nucifera HOM05D002817 ORTHO05D003138 1.6e-06 57.4 35 68.6
Os02g0613000 Oryza sativa ssp. japonica HOM05D002817 ORTHO05D003138 1.6e-06 57.4 35 77.1
Potri.003G043300 Populus trichocarpa HOM05D000251 ORTHO05D000414 1.6e-06 57.4 102 38.2
Sabra03G0022900 Salix brachista HOM05D000251 ORTHO05D000414 1.6e-06 57.4 101 36.6
Thecc.09G020500 Theobroma cacao HOM05D002817 ORTHO05D003138 1.6e-06 57.4 38 65.8
TAR625G1156 Trochodendron aralioides HOM05D002817 ORTHO05D003138 1.6e-06 57.4 35 71.4
Cc08_g00320 Coffea canephora HOM05D002817 ORTHO05D003138 2.1e-06 57.0 35 71.4
Dinv43170 Davidia involucrata HOM05D002817 ORTHO05D003138 2.1e-06 57.0 35 74.3
Duzib168G1641 Durio zibethinus HOM05D002817 ORTHO05D003138 2.1e-06 57.0 35 71.4
GSVIVG01016806001 Vitis vinifera HOM05D000251 ORTHO05D000414 2.1e-06 57.0 48 60.4
GSVIVG01034717001 Vitis vinifera HOM05D000251 ORTHO05D000414 2.1e-06 57.0 48 60.4
Duzib187G0671 Durio zibethinus HOM05D002817 ORTHO05D003138 2.7e-06 56.6 38 65.8
Eucgr.C00479 Eucalyptus grandis HOM05D002817 ORTHO05D003138 2.7e-06 56.6 35 68.6
QL05p009704 Quercus lobata HOM05D000251 ORTHO05D000414 2.7e-06 56.6 48 60.4
Rhsim01G0050600 Rhododendron simsii HOM05D002817 ORTHO05D003138 2.7e-06 56.6 34 70.6
SGA_v2.0_scaffold229G43328 Striga asiatica HOM05D002817 ORTHO05D003138 2.7e-06 56.6 36 69.4
unitig_37.g12718 Utricularia gibba HOM05D002817 ORTHO05D003138 2.7e-06 56.6 34 73.5
MSTRG.26023 Avicennia marina HOM05D002817 ORTHO05D003138 3.6e-06 56.2 50 54.0
DCAR_009346 Daucus carota HOM05D002817 ORTHO05D003138 3.6e-06 56.2 34 70.6
Phvul.003G172800 Phaseolus vulgaris HOM05D002817 ORTHO05D003138 3.6e-06 56.2 35 74.3
TWI63G0067 Tripterygium wilfordii HOM05D002817 ORTHO05D003138 3.6e-06 56.2 35 68.6
TWI63G1529 Tripterygium wilfordii HOM05D002817 ORTHO05D003138 3.6e-06 56.2 35 68.6
TAR170G0005 Trochodendron aralioides HOM05D002817 ORTHO05D003138 3.6e-06 56.2 35 71.4
vmacro07756 Vaccinium macrocarpon HOM05D002817 ORTHO05D003138 3.6e-06 56.2 34 70.6
HPP92_021998 Vanilla planifolia HOM05D002817 ORTHO05D003138 3.6e-06 56.2 33 75.8
Aqoxy7G03588 Aquilegia oxysepala HOM05D002817 ORTHO05D003138 4.7e-06 55.8 35 68.6
AUR62012436 Chenopodium quinoa HOM05D002817 ORTHO05D003138 4.7e-06 55.8 35 74.3
AUR62031560 Chenopodium quinoa HOM05D002817 ORTHO05D003138 4.7e-06 55.8 35 74.3
COL.COLO4_24156 Corchorus olitorius HOM05D002817 ORTHO05D003138 4.7e-06 55.8 35 68.6
HanXRQChr03g0063321 Helianthus annuus HOM05D002817 ORTHO05D003138 4.7e-06 55.8 36 66.7
PSO210G7320 Papaver somniferum HOM05D002817 ORTHO05D003138 4.7e-06 55.8 35 68.6
Peaxi162Scf00113g00047 Petunia axillaris HOM05D002817 ORTHO05D003138 4.7e-06 55.8 38 63.2
Sabra01G0143700 Salix brachista HOM05D000251 ORTHO05D000414 4.7e-06 55.8 101 35.6
Sopen06g008500 Solanum pennellii HOM05D002817 ORTHO05D003138 4.7e-06 55.8 35 62.9
EL10Ac2g04165 Beta vulgaris HOM05D002817 ORTHO05D003138 6.1e-06 55.5 35 68.6
Duzib160G0708 Durio zibethinus HOM05D000251 ORTHO05D000414 6.1e-06 55.5 114 35.1
Eucgr.C02735 Eucalyptus grandis HOM05D002817 ORTHO05D003138 6.1e-06 55.5 35 68.6
Gohir.D13G188600 Gossypium hirsutum HOM05D002817 ORTHO05D003138 6.1e-06 55.5 35 65.7
Gorai.013G214000 Gossypium raimondii HOM05D002817 ORTHO05D003138 6.1e-06 55.5 35 65.7
vmacro05160 Vaccinium macrocarpon HOM05D002817 ORTHO05D003138 6.1e-06 55.5 35 71.4
AUR62011233 Chenopodium quinoa HOM05D002817 ORTHO05D003138 8.0e-06 55.1 35 68.6
Medtr4g116190 Medicago truncatula HOM05D002817 ORTHO05D003138 8.0e-06 55.1 35 68.6
TAR369G0002 Trochodendron aralioides HOM05D000251 ORTHO05D000414 8.0e-06 55.1 48 58.3
TAR636G3663 Trochodendron aralioides HOM05D000251 ORTHO05D000414 8.0e-06 55.1 48 58.3


User provided reference genes

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