Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 4.8e-112 407.9 216 100.0
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 4.1e-103 378.3 216 94.0
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 3.2e-71 272.3 221 67.9
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 2.6e-25 119.8 205 37.1
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 4.9e-24 115.5 212 40.1
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 6.4e-24 115.2 216 34.3
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 1.4e-23 114.0 214 34.1
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 1.9e-23 113.6 188 40.4
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 3.2e-23 112.8 209 39.2
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 7.1e-23 111.7 207 37.2
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 9.3e-23 111.3 188 39.4
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.2e-22 110.9 188 39.9
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 1.2e-22 110.9 207 37.2
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 1.6e-22 110.5 191 38.2
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 1.6e-22 110.5 208 34.1
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 2.7e-22 109.8 191 40.3
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 2.7e-22 109.8 216 34.3
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 3.5e-22 109.4 203 35.5
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 6.0e-22 108.6 181 39.8
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 1.0e-21 107.8 197 38.1
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 1.3e-21 107.5 215 36.3
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 1.8e-21 107.1 208 34.1
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 1.8e-21 107.1 181 39.2
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 3.0e-21 106.3 210 37.6
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 3.9e-21 105.9 184 38.0
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 3.9e-21 105.9 204 38.2
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 5.1e-21 105.5 211 34.1
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 5.1e-21 105.5 211 39.3
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 5.1e-21 105.5 169 35.5
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 6.7e-21 105.1 207 35.7
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 6.7e-21 105.1 207 34.8
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 8.7e-21 104.8 181 38.7
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 1.1e-20 104.4 205 36.1
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 1.1e-20 104.4 214 35.5
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 1.5e-20 104.0 191 38.2
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 2.5e-20 103.2 192 37.5
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 2.5e-20 103.2 183 36.1
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 2.5e-20 103.2 214 35.0
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 3.3e-20 102.8 204 36.8
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 4.3e-20 102.4 211 35.1
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 4.3e-20 102.4 194 38.7
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 9.6e-20 101.3 183 36.6
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 9.6e-20 101.3 180 38.3
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 1.6e-19 100.5 204 36.3
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 1.6e-19 100.5 212 32.5
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 2.1e-19 100.1 213 35.7
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 2.1e-19 100.1 202 38.6
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 2.8e-19 99.8 178 37.6
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 6.2e-19 98.6 211 37.4
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 6.2e-19 98.6 181 38.1
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 6.2e-19 98.6 194 35.1
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 8.1e-19 98.2 211 36.0
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 8.1e-19 98.2 192 37.5
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 1.4e-18 97.4 205 35.1
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 1.8e-18 97.1 213 37.6
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 3.1e-18 96.3 199 39.2
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 3.1e-18 96.3 211 31.8
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 4.0e-18 95.9 216 32.4
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 5.3e-18 95.5 193 38.3
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 6.9e-18 95.1 116 44.8
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 6.9e-18 95.1 211 35.1
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 6.9e-18 95.1 193 36.8
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 1.5e-17 94.0 187 35.8
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 2.0e-17 93.6 206 34.5
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 2.6e-17 93.2 196 31.1
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 1.0e-16 91.3 180 35.6
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 1.3e-16 90.9 206 33.5
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 3.8e-16 89.4 165 35.8
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 8.4e-16 88.2 197 37.1
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 1.4e-15 87.4 211 31.8
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 2.5e-15 86.7 215 30.7
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 3.2e-15 86.3 195 32.8
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 5.5e-15 85.5 217 34.1
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 7.1e-15 85.1 178 37.1
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 1.6e-14 84.0 214 33.6
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 2.1e-14 83.6 181 37.6
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 2.7e-14 83.2 127 38.6
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 4.6e-14 82.4 213 30.0
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 4.6e-14 82.4 214 32.2
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 7.9e-14 81.6 181 37.0
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.0e-13 81.3 226 35.4
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 1.0e-13 81.3 202 33.2
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 1.8e-13 80.5 211 34.1
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 5.1e-13 79.0 227 33.9
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 6.7e-13 78.6 218 34.4
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 6.7e-13 78.6 192 36.5
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 8.7e-13 78.2 163 35.6
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 1.1e-12 77.8 198 30.8
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 1.5e-12 77.4 192 35.9
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 1.9e-12 77.0 220 33.6
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 1.9e-12 77.0 191 33.5
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 2.5e-12 76.6 105 39.0
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 2.5e-12 76.6 216 33.3
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 3.3e-12 76.3 210 29.5
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 5.7e-12 75.5 135 33.3
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 7.4e-12 75.1 182 35.2
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 9.6e-12 74.7 227 33.0
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 2.1e-11 73.6 210 32.9
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 2.8e-11 73.2 219 33.8
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 2.8e-11 73.2 227 32.6
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 2.8e-11 73.2 227 32.6
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 2.8e-11 73.2 164 36.6
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 2.8e-11 73.2 89 40.4
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 3.7e-11 72.8 85 41.2
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 8.2e-11 71.6 164 36.6
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 6.9e-10 68.6 204 31.9
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 2.0e-09 67.0 203 30.0
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 2.0e-09 67.0 203 30.0
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 2.9e-08 63.2 99 33.3
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 2.9e-08 63.2 127 30.7
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 2.1e-06 57.0 158 30.4
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 2.1e-06 57.0 66 45.5


User provided reference genes

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