Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 1.3e-220 769.6 441 100.0
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 8.1e-191 670.6 431 85.8
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 1.9e-155 553.1 455 69.2
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 6.3e-50 202.6 252 44.4
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.2e-48 198.4 256 43.4
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 2.0e-48 197.6 441 32.9
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.6e-48 197.2 264 42.0
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 3.4e-48 196.8 258 43.0
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 5.9e-48 196.1 258 42.6
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 7.7e-48 195.7 459 33.8
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.7e-47 194.5 258 41.9
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.2e-47 194.1 257 41.2
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 5.0e-47 193.0 258 43.4
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 6.5e-47 192.6 257 42.4
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 8.5e-47 192.2 444 31.3
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 1.1e-46 191.8 454 31.9
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.1e-46 191.8 444 31.3
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.4e-46 191.4 444 31.1
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 2.5e-46 190.7 258 43.0
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 2.5e-46 190.7 443 33.0
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 2.5e-46 190.7 449 32.7
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 2.5e-46 190.7 259 40.9
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 4.2e-46 189.9 258 40.7
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 4.2e-46 189.9 444 33.1
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 4.2e-46 189.9 477 32.7
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 5.5e-46 189.5 257 41.6
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 5.5e-46 189.5 464 32.5
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 7.2e-46 189.1 259 42.9
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 7.2e-46 189.1 258 42.2
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 9.4e-46 188.7 441 35.1
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 9.4e-46 188.7 275 41.1
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 2.1e-45 187.6 258 42.2
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 3.6e-45 186.8 475 32.2
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 4.6e-45 186.4 449 32.5
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 7.9e-45 185.7 455 31.9
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 1.0e-44 185.3 256 43.0
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.4e-44 184.9 251 42.2
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.4e-44 184.9 251 42.2
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.4e-44 184.9 441 31.3
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 2.3e-44 184.1 257 40.1
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 2.3e-44 184.1 464 33.0
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 3.0e-44 183.7 257 40.1
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 5.1e-44 183.0 256 40.6
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 6.7e-44 182.6 257 42.4
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 8.8e-44 182.2 253 41.5
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 8.8e-44 182.2 258 41.1
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.1e-43 181.8 441 31.1
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 1.5e-43 181.4 440 30.2
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.5e-43 181.4 441 31.1
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 1.5e-43 181.4 257 39.3
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 2.0e-43 181.0 460 31.5
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.5e-43 180.6 469 31.6
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 4.3e-43 179.9 259 42.9
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 7.4e-43 179.1 261 41.4
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 7.4e-43 179.1 442 31.4
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 7.4e-43 179.1 464 32.3
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 9.7e-43 178.7 279 40.1
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 1.3e-42 178.3 258 40.3
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.7e-42 177.9 246 41.1
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 1.7e-42 177.9 446 31.2
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 2.2e-42 177.6 258 40.7
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 2.2e-42 177.6 253 40.7
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 2.2e-42 177.6 259 39.4
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 3.7e-42 176.8 257 40.5
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 3.7e-42 176.8 275 38.9
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.1e-41 173.7 254 39.4
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 4.1e-41 173.3 448 31.7
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 3.4e-40 170.2 254 37.4
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 3.4e-40 170.2 247 40.9
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 7.7e-40 169.1 262 38.5
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 7.7e-40 169.1 452 30.1
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.3e-39 168.3 462 31.8
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 1.3e-39 168.3 460 29.8
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.3e-39 168.3 439 30.8
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.3e-39 168.3 248 40.3
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 1.7e-39 167.9 252 40.1
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 1.7e-39 167.9 258 39.1
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 1.7e-39 167.9 266 38.3
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 2.2e-39 167.5 450 32.2
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 2.9e-39 167.2 259 38.2
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 3.8e-39 166.8 252 39.7
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.8e-39 166.8 447 31.1
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 3.8e-39 166.8 266 38.0
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 5.0e-39 166.4 259 37.5
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 5.0e-39 166.4 258 36.4
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 5.0e-39 166.4 259 36.7
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 5.0e-39 166.4 425 30.6
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 1.1e-38 165.2 425 30.6
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.4e-38 164.9 249 39.4
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 1.4e-38 164.9 256 37.5
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 1.9e-38 164.5 252 39.3
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 2.5e-38 164.1 448 31.5
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 2.5e-38 164.1 446 32.1
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.2e-38 162.5 437 31.8
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 9.4e-38 162.2 424 32.1
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.2e-37 161.8 265 36.2
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 1.6e-37 161.4 443 31.4
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 2.1e-37 161.0 258 36.4
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.6e-37 160.2 238 40.8
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.6e-37 160.2 238 40.8
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 6.1e-37 159.5 258 36.4
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.9e-37 159.1 426 31.0
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 1.0e-36 158.7 474 29.7
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 1.1e-35 155.2 238 39.1
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 4.4e-35 153.3 433 30.5
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 1.3e-34 151.8 256 37.5
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 4.8e-34 149.8 242 39.3
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 1.8e-33 147.9 242 36.8
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 3.1e-33 147.1 260 35.8
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 7.0e-33 146.0 260 35.4
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.0e-31 142.1 262 34.4
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 2.5e-30 137.5 261 36.8
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 7.2e-30 136.0 380 31.8
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 4.7e-29 133.3 257 31.1
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 6.1e-29 132.9 258 34.5
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 8.0e-29 132.5 261 35.6
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 1.4e-28 131.7 261 35.6
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 3.3e-27 127.1 443 30.7
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 3.3e-27 127.1 437 28.1
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 1.7e-26 124.8 256 32.0
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 2.8e-26 124.0 189 39.7
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 2.8e-26 124.0 429 26.6
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 3.7e-26 123.6 257 31.1
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 7.2e-22 109.4 248 29.8
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 2.1e-21 107.8 248 30.2
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 4.7e-21 106.7 415 26.0
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 6.8e-20 102.8 254 29.1
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 8.8e-20 102.4 147 38.1
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.4e-17 95.1 135 39.3
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.8e-17 94.7 192 34.4
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.7e-15 88.2 346 28.9
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.2e-15 87.8 226 29.6
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 5.0e-15 86.7 192 31.8
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 8.5e-15 85.9 439 26.4
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.9e-14 84.7 270 25.9
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.4e-11 73.6 108 38.0
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 1.7e-10 71.6 111 40.5
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 2.8e-10 70.9 243 28.8
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 1.6e-08 65.1 111 36.9
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 1.0e-07 62.4 116 36.2


User provided reference genes

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